pycom16g25120

26S proteasome non-ATPase regulatory subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
26869666 .. 26875462
5797 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1161 bp
ATGGCCGCGCTGCAGTACCTGGAGTTGCTGCGCAACGCGCATCCGGAGCTCGCCGAATGGTACAATTCACTCGCAGATCTGTACCAGAGGAAGCTATGGCACCAGCTCACTCTCAAGCTCGAGCAGTTCGTTGCTCTCGCCGTCTTTCAGGCTGGTGATGCTTTAATACAGTTATACCACAATTTCATCACCGATTTTGAGACTAAAATCAACCTTCTCAAGCTCGCACACTTTGCTGTAATCGTTTCTCGACAGTACCCAGAGAAGGAAGCTGCTATCAGTTACCTAGAAGGGGTGATTGAGAAGCTTCAAGCCACTAGAGAGCAACGCATAGAGGAACCAATCCTTTACATTAAGATGCAAATAGCAATATTCAAACTTGAGCAACAAGACCAAAAAGAGTGCAAAAGGCTTCTAGAAGATGGAAAGACTACACTTGACAGTATGACTGACATTGATCCATCTGTATATGCTAGCTATTATTGGGTATCATCTCAATATCATAAGTTCCGTCAAGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTTTATCTAGCATACACATCAGTGGAGTCTCTCTCAGAATCATTCAAGCTGGATCTGGCATTTGATTTGTCCCTTTCTGCACTCCTGGGAGATAATATCTACAACTTTGGAGAGCTGCTTGCGCATCCTATCATTAAGAGCCTTCTAGGGACAAAGGTAGAGTGGCTTTACTATATTCTTCAAGCGTTCAACTCTGGTGATTTAGTTCGGTATCAAGAATTATGTCGTGTACACAATGCTGCTTTGAGAGCACAACCAGCATTAGTTGAAAATGAGAAGAAGCTTTTGGAGAAGATTAACATTCTGTGCTTGATGGAAATTATCTTCAGCCGGCCATCTGAAGATCGGACTATACCATTGAGTATCATTGCAGAGCGCACCAAACTTTCTGTTGAGGATGTGGAGCATCTTCTTGTGAAGAGCCTTTCCGTTCATCTGATTGAGGGAATAATCGATCAGGTTGAGGAGACGGTGCATGTGTCCTGGGTGCAGCCAAGAGTTTTGGGGATTCCACAGATCCAATCTTTGCGTGATAGGCTGGACGGTTGGTTGGACAAAGTCCATACTGCTTTGTTATCGATCGAGGCGGAAACACCTGATTTGGTTGCGTCTTGA

Protein Analysis

387

Amino Acids

44.53

Weight (kDa)

5.2

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSD13_N PF22037 21 - 242 1.3e-73 PSD13 N-terminal repeats
PCI PF01399 263 - 344 2.8e-09 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009252)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 32, 669
AccB1I GGYRCC 1 cut(s) 99
AccII CGCG 2 cut(s) 8, 38
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 2 cut(s) 6, 1133
AclWI GGATC 3 cut(s) 452, 606, 1057
AcoI YGGCCR 2 cut(s) 3, 878
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 2 cut(s) 856, 906
AfaI GTAC 5 cut(s) 17, 62, 83, 257, 777
AfiI CCNNNNNNNGG 2 cut(s) 265, 292
AgsI TTSAA 6 cut(s) 311, 376, 592, 728, 736, 815
AjnI CCWGG 3 cut(s) 18, 630, 1028
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AleI CACNNNNGTG 1 cut(s) 566
Alw21I GWGCWC 3 cut(s) 51, 544, 799
Alw26I GTCTC 3 cut(s) 194, 579, 1007
AlwI GGATC 3 cut(s) 452, 606, 1057
AlwNI CAGNNNCTG 1 cut(s) 19
Ama87I CYCGRG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 2 cut(s) 3, 878
ApeKI GCWGC 6 cut(s) 10, 28, 272, 661, 785, 1036
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 5 cut(s) 10, 33, 40, 670, 924
AsuHPI GGTGA 4 cut(s) 167, 181, 307, 755
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 119
BanI GGYRCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 3 cut(s) 51, 544, 799
BbvI GCAGC 5 cut(s) 15, 259, 648, 772, 1048
BccI CCATC 4 cut(s) 416, 469, 853, 889
BceAI ACGGC 1 cut(s) 125
BciT130I CCWGG 3 cut(s) 20, 632, 1030
BcoDI GTCTC 3 cut(s) 194, 579, 1007
BfaI CTAG 6 cut(s) 287, 318, 416, 474, 554, 692
BfmI CTRYAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 76
BisI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
BlsI GCNGC 7 cut(s) 7, 12, 30, 274, 663, 787, 1038
Bme1390I CCNGG 3 cut(s) 20, 632, 1030
BmeT110I CYCGRG 1 cut(s) 119
BmiI GGNNCC 2 cut(s) 101, 339
BmrFI CCNGG 3 cut(s) 20, 632, 1030
BmsI GCATC 5 cut(s) 49, 148, 348, 679, 961
BmtI GCTAGC 1 cut(s) 477
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 3 cut(s) 98, 203, 401
Bsa29I ATCGAT 2 cut(s) 999, 1124
BsaJI CCNNGG 2 cut(s) 631, 1029
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 292
Bse118I RCCGGY 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 912
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 3 cut(s) 20, 632, 1030
BseCI ATCGAT 2 cut(s) 999, 1124
BseDI CCNNGG 2 cut(s) 631, 1029
BseGI GGATG 3 cut(s) 40, 670, 949
BseLI CCNNNNNNNGG 2 cut(s) 265, 292
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 2 cut(s) 516, 594
BseRI GAGGAG 1 cut(s) 1025
BseXI GCAGC 5 cut(s) 15, 259, 648, 772, 1048
BsgI GTGCAG 2 cut(s) 609, 1055
Bsh1236I CGCG 2 cut(s) 8, 38
Bsh1285I CGRYCG 1 cut(s) 1128
BshFI GGCC 2 cut(s) 5, 880
BshNI GGYRCC 1 cut(s) 99
BshVI ATCGAT 2 cut(s) 999, 1124
BsiEI CGRYCG 1 cut(s) 1128
BsiHKAI GWGCWC 3 cut(s) 51, 544, 799
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 2 cut(s) 44, 877
BslFI GGGAC 2 cut(s) 601, 709
BslI CCNNNNNNNGG 2 cut(s) 265, 292
BsmAI GTCTC 3 cut(s) 194, 579, 1007
BsmBI CGTCTC 1 cut(s) 1007
BsmFI GGGAC 2 cut(s) 601, 709
BsnI GGCC 2 cut(s) 5, 880
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 3 cut(s) 51, 544, 799
Bsp13I TCCGGA 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
BspACI CCGC 2 cut(s) 6, 1133
BspANI GGCC 2 cut(s) 5, 880
BspCNI CTCAG 2 cut(s) 517, 593
BspDI ATCGAT 2 cut(s) 999, 1124
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 2 cut(s) 8, 38
BspLI GGNNCC 2 cut(s) 101, 339
BspMAI CTGCAG 1 cut(s) 15
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 452, 606, 1057
BspQI GCTCTTC 2 cut(s) 549, 959
BspT107I GGYRCC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 876
BsrGI TGTACA 1 cut(s) 775
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 2 cut(s) 631, 1029
BssMI GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
Bst2UI CCWGG 3 cut(s) 20, 632, 1030
Bst4CI ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
Bst6I CTCTTC 2 cut(s) 549, 959
BstAPI GCANNNNNTGC 1 cut(s) 233
BstAUI TGTACA 1 cut(s) 775
BstC8I GCNNGC 5 cut(s) 51, 225, 475, 666, 878
BstDEI CTNAG 2 cut(s) 525, 580
BstF5I GGATG 3 cut(s) 40, 670, 949
BstFNI CGCG 2 cut(s) 8, 38
BstHHI GCGC 5 cut(s) 10, 33, 40, 670, 924
BstKTI GATC 7 cut(s) 79, 460, 601, 892, 1003, 1065, 1128
BstMAI GTCTC 3 cut(s) 194, 579, 1007
BstMBI GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
BstMCI CGRYCG 1 cut(s) 1128
BstMWI GCNNNNNNNGC 8 cut(s) 37, 46, 158, 233, 667, 794, 803, 1081
BstNI CCWGG 3 cut(s) 20, 632, 1030
BstNSI RCATGY 1 cut(s) 1025
BstSCI CCNGG 3 cut(s) 18, 630, 1028
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 2 cut(s) 8, 38
BstV1I GCAGC 5 cut(s) 15, 259, 648, 772, 1048
BstX2I RGATCY 3 cut(s) 76, 598, 1062
BstYI RGATCY 3 cut(s) 76, 598, 1062
Bsu15I ATCGAT 2 cut(s) 999, 1124
BsuRI GGCC 2 cut(s) 5, 880
BsuTUI ATCGAT 2 cut(s) 999, 1124
BtsCI GGATG 3 cut(s) 40, 670, 949
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 5 cut(s) 51, 225, 475, 666, 878
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 5 cut(s) 10, 33, 40, 670, 924
Cfr10I RCCGGY 1 cut(s) 876
ClaI ATCGAT 2 cut(s) 999, 1124
CseI GACGC 1 cut(s) 1143
Csp6I GTAC 5 cut(s) 16, 61, 82, 256, 776
CviAII CATG 1 cut(s) 1022
CviQI GTAC 5 cut(s) 16, 61, 82, 256, 776
DdeI CTNAG 2 cut(s) 525, 580
DpnI GATC 7 cut(s) 78, 459, 600, 891, 1002, 1064, 1127
DpnII GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
EaeI YGGCCR 2 cut(s) 3, 878
Eam1104I CTCTTC 2 cut(s) 549, 959
EarI CTCTTC 2 cut(s) 549, 959
EciI GGCGGA 1 cut(s) 1148
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 856, 906
Eco88I CYCGRG 1 cut(s) 119
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 3 cut(s) 18, 630, 1028
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 1007
FaeI CATG 1 cut(s) 1025
FaqI GGGAC 2 cut(s) 601, 709
FatI CATG 1 cut(s) 1021
Fnu4HI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
FokI GGATG 3 cut(s) 27, 657, 956
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
FspBI CTAG 6 cut(s) 287, 318, 416, 474, 554, 692
FspI TGCGCA 2 cut(s) 32, 669
GlaI GCGC 5 cut(s) 9, 32, 39, 669, 923
GluI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 2 cut(s) 5, 880
HapII CCGG 2 cut(s) 44, 877
HgaI GACGC 1 cut(s) 1143
HhaI GCGC 5 cut(s) 10, 33, 40, 670, 924
Hin1II CATG 1 cut(s) 1025
Hin6I GCGC 5 cut(s) 8, 31, 38, 668, 922
HinP1I GCGC 5 cut(s) 8, 31, 38, 668, 922
HindIII AAGCTT 2 cut(s) 305, 827
HinfI GANTC 3 cut(s) 572, 584, 1054
HpaII CCGG 2 cut(s) 44, 877
HphI GGTGA 4 cut(s) 167, 181, 307, 755
Hpy166II GTNNAC 2 cut(s) 776, 778
Hpy188I TCNGA 4 cut(s) 583, 886, 894, 984
Hpy188III TCNNGA 6 cut(s) 44, 249, 416, 515, 761, 1158
Hpy8I GTNNAC 2 cut(s) 776, 778
HpyAV CCTTC 4 cut(s) 224, 259, 284, 698
HpyCH4III ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
HpyCH4V TGCA 7 cut(s) 13, 361, 405, 626, 917, 1021, 1036
HpyF10VI GCNNNNNNNGC 8 cut(s) 37, 46, 158, 233, 667, 794, 803, 1081
HpyF3I CTNAG 2 cut(s) 525, 580
Hsp92II CATG 1 cut(s) 1025
HspAI GCGC 5 cut(s) 8, 31, 38, 668, 922
Kpn2I TCCGGA 1 cut(s) 43
KroI GCCGGC 1 cut(s) 876
KroNI GCCGGC 1 cut(s) 878
Kzo9I GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
LguI GCTCTTC 2 cut(s) 549, 959
LmnI GCTCC 2 cut(s) 46, 949
Lsp1109I GCAGC 5 cut(s) 15, 259, 648, 772, 1048
LweI GCATC 5 cut(s) 49, 148, 348, 679, 961
MaeI CTAG 6 cut(s) 287, 318, 416, 474, 554, 692
MaeIII GTNAC 1 cut(s) 281
MalI GATC 7 cut(s) 78, 459, 600, 891, 1002, 1064, 1127
MboI GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
MboII GAAGA 9 cut(s) 431, 536, 716, 835, 850, 862, 899, 947, 976
MflI RGATCY 3 cut(s) 76, 598, 1062
MhlI GDGCHC 3 cut(s) 51, 544, 799
MluCI AATT 5 cut(s) 64, 181, 518, 764, 864
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 1077
MnlI CCTC 6 cut(s) 81, 328, 934, 982, 1003, 1123
MroI TCCGGA 1 cut(s) 43
MroNI GCCGGC 1 cut(s) 876
MseI TTAA 4 cut(s) 164, 354, 681, 843
MslI CAYNNNNRTG 2 cut(s) 356, 566
MspI CCGG 2 cut(s) 44, 877
MspR9I CCNGG 3 cut(s) 20, 632, 1030
MvaI CCWGG 3 cut(s) 20, 632, 1030
MvnI CGCG 2 cut(s) 8, 38
MwoI GCNNNNNNNGC 8 cut(s) 37, 46, 158, 233, 667, 794, 803, 1081
NaeI GCCGGC 1 cut(s) 878
NdeII GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
NgoMIV GCCGGC 1 cut(s) 876
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 1 cut(s) 1025
NlaIV GGNNCC 2 cut(s) 101, 339
NsbI TGCGCA 2 cut(s) 32, 669
NspI RCATGY 1 cut(s) 1025
OliI CACNNNNGTG 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 119
PciSI GCTCTTC 2 cut(s) 549, 959
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 878
PfeI GAWTC 2 cut(s) 584, 1054
PflFI GACNNNGTC 1 cut(s) 1103
PkrI GCNGC 7 cut(s) 7, 12, 30, 274, 663, 787, 1038
Ple19I CGATCG 1 cut(s) 1128
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 18, 630, 1028
PspGI CCWGG 3 cut(s) 18, 630, 1028
PspN4I GGNNCC 2 cut(s) 101, 339
PspXI VCTCGAGB 1 cut(s) 119
PstI CTGCAG 1 cut(s) 15
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 3 cut(s) 76, 598, 1062
PsyI GACNNNGTC 1 cut(s) 1103
PvuI CGATCG 1 cut(s) 1128
RsaI GTAC 5 cut(s) 17, 62, 83, 257, 777
RsaNI GTAC 5 cut(s) 16, 61, 82, 256, 776
RseI CAYNNNNRTG 2 cut(s) 356, 566
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 2 cut(s) 549, 959
SaqAI TTAA 4 cut(s) 164, 354, 681, 843
SatI GCNGC 7 cut(s) 6, 11, 29, 273, 662, 786, 1037
Sau3AI GATC 7 cut(s) 76, 457, 598, 889, 1000, 1062, 1125
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 3 cut(s) 20, 632, 1030
SduI GDGCHC 3 cut(s) 51, 544, 799
SfaNI GCATC 5 cut(s) 49, 148, 348, 679, 961
SfcI CTRYAG 1 cut(s) 11
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 356, 566
SmlI CTYRAG 4 cut(s) 113, 119, 218, 380
SmoI CTYRAG 4 cut(s) 113, 119, 218, 380
Sse9I AATT 5 cut(s) 64, 181, 518, 764, 864
SsiI CCGC 2 cut(s) 6, 1133
SspI AATATT 1 cut(s) 372
SspMI CTAG 6 cut(s) 287, 318, 416, 474, 554, 692
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 3 cut(s) 18, 630, 1028
TaaI ACNGT 5 cut(s) 171, 255, 443, 1018, 1091
TaqI TCGA 5 cut(s) 120, 250, 999, 1124, 1128
TasI AATT 5 cut(s) 64, 181, 518, 764, 864
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 584, 1054
Tru1I TTAA 4 cut(s) 164, 354, 681, 843
Tru9I TTAA 4 cut(s) 164, 354, 681, 843
TscAI CASTG 1 cut(s) 573
TseI GCWGC 6 cut(s) 10, 28, 272, 661, 785, 1036
TspDTI ATGAA 2 cut(s) 175, 968
TspGWI ACGGA 2 cut(s) 500, 964
TspRI CASTG 1 cut(s) 573
Tth111I GACNNNGTC 1 cut(s) 1103
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 1 cut(s) 1025
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 6 cut(s) 287, 318, 416, 474, 554, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.