single fertilization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20970 |
| fragaria_vesca | FvH4_5g26490 FvH4_5g26490 |
| malus_domestica | MD06G1001600.v1.1 |
| prunus_persica | Prupe.5G002400_v2.0.a1 Prupe.5G002400_v2.0.a1 |
| pyrus_communis | pycom06g00170 pycom16g26270 pycom16g26280 |
| rosa_chinensis | RchiOBHm_Chr7g0217401 |
| rosa_laevigata | RLG00000002480 |
| rosa_roxburghii | Rroxscaffold_3G00242210 |
| rosa_rugosa | Rorug07G0168900 |
| rosa_samantha | Rh7AG308500 Rh7BG299200 Rh7CG327800 Rh7DG307800 |
| rosa_wichuraiana | Rw7G026160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1317 |
| Acc36I | ACCTGC | 1 cut(s) | 2232 |
| AccI | GTMKAC | 1 cut(s) | 624 |
| AccII | CGCG | 1 cut(s) | 140 |
| AccIII | TCCGGA | 1 cut(s) | 1987 |
| AciI | CCGC | 3 cut(s) | 591, 1547, 2699 |
| AclI | AACGTT | 1 cut(s) | 1777 |
| AclWI | GGATC | 4 cut(s) | 554, 949, 1197, 1527 |
| AcsI | RAATTY | 6 cut(s) | 122, 128, 349, 494, 1069, 2475 |
| AcuI | CTGAAG | 4 cut(s) | 768, 1424, 2238, 2364 |
| AdeI | CACNNNGTG | 1 cut(s) | 1754 |
| AfaI | GTAC | 2 cut(s) | 232, 910 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1171, 1234, 1896 |
| AflIII | ACRYGT | 2 cut(s) | 905, 1102 |
| AhlI | ACTAGT | 1 cut(s) | 739 |
| AjnI | CCWGG | 2 cut(s) | 815, 1434 |
| Alw21I | GWGCWC | 2 cut(s) | 1496, 2332 |
| Alw26I | GTCTC | 5 cut(s) | 1218, 1346, 2486, 2532, 2700 |
| AlwI | GGATC | 4 cut(s) | 554, 949, 1197, 1527 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2129 |
| Aor13HI | TCCGGA | 1 cut(s) | 1987 |
| AoxI | GGCC | 6 cut(s) | 851, 1025, 1161, 1236, 2256, 2625 |
| ApaI | GGGCCC | 1 cut(s) | 1165 |
| ApeKI | GCWGC | 9 cut(s) | 659, 1196, 1565, 1628, 1733, 2236, 2318, 2611, 2679 |
| ApoI | RAATTY | 6 cut(s) | 122, 128, 349, 494, 1069, 2475 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1345, 1377 |
| AseI | ATTAAT | 1 cut(s) | 1268 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1536 |
| AspLEI | GCGC | 6 cut(s) | 140, 142, 325, 1902, 2241, 2542 |
| AspS9I | GGNCC | 4 cut(s) | 1161, 1162, 1910, 2625 |
| AsuC2I | CCSGG | 2 cut(s) | 1127, 2507 |
| AsuHPI | GGTGA | 3 cut(s) | 441, 1451, 2521 |
| AvaII | GGWCC | 1 cut(s) | 1910 |
| AxyI | CCTNAGG | 1 cut(s) | 2013 |
| BaeGI | GKGCMC | 4 cut(s) | 49, 420, 510, 1165 |
| BanII | GRGCYC | 3 cut(s) | 1165, 1496, 1926 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1685, 1717 |
| BauI | CACGAG | 1 cut(s) | 1415 |
| Bbv12I | GWGCWC | 2 cut(s) | 1496, 2332 |
| BbvCI | CCTCAGC | 1 cut(s) | 1011 |
| BbvI | GCAGC | 9 cut(s) | 646, 1208, 1552, 1615, 1720, 2248, 2305, 2623, 2691 |
| BccI | CCATC | 4 cut(s) | 1301, 1889, 2389, 2579 |
| BceAI | ACGGC | 1 cut(s) | 1012 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1367, 1401, 2623, 2657 |
| BciT130I | CCWGG | 2 cut(s) | 817, 1436 |
| BcnI | CCSGG | 2 cut(s) | 1127, 2507 |
| BcoDI | GTCTC | 5 cut(s) | 1218, 1346, 2486, 2532, 2700 |
| BcuI | ACTAGT | 1 cut(s) | 739 |
| BfaI | CTAG | 4 cut(s) | 740, 1431, 2223, 2496 |
| BfmI | CTRYAG | 2 cut(s) | 1629, 2445 |
| BfoI | RGCGCY | 1 cut(s) | 1903 |
| BfuAI | ACCTGC | 1 cut(s) | 2232 |
| BisI | GCNGC | 9 cut(s) | 660, 1197, 1566, 1629, 1734, 2237, 2319, 2612, 2680 |
| BlpI | GCTNAGC | 1 cut(s) | 717 |
| BlsI | GCNGC | 9 cut(s) | 661, 1198, 1567, 1630, 1735, 2238, 2320, 2613, 2681 |
| Bme1390I | CCNGG | 4 cut(s) | 817, 1127, 1436, 2507 |
| Bme18I | GGWCC | 1 cut(s) | 1910 |
| BmgT120I | GGNCC | 4 cut(s) | 1161, 1162, 1910, 2625 |
| BmiI | GGNNCC | 3 cut(s) | 1163, 1164, 1923 |
| BmrFI | CCNGG | 4 cut(s) | 817, 1127, 1436, 2507 |
| BmrI | ACTGGG | 3 cut(s) | 44, 504, 2589 |
| BmuI | ACTGGG | 3 cut(s) | 44, 504, 2589 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1641 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1409, 1441 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1011, 2629 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 717 |
| BpuEI | CTTGAG | 3 cut(s) | 1545, 1870, 2292 |
| BpuMI | CCSGG | 2 cut(s) | 1127, 2507 |
| BsaI | GGTCTC | 3 cut(s) | 1218, 1346, 2532 |
| BsaJI | CCNNGG | 6 cut(s) | 328, 816, 1435, 2109, 2559, 2615 |
| BsaWI | WCCGGW | 1 cut(s) | 1987 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1171, 1234, 1896 |
| Bse1I | ACTGG | 4 cut(s) | 50, 510, 634, 2595 |
| Bse21I | CCTNAGG | 1 cut(s) | 2013 |
| Bse3DI | GCAATG | 1 cut(s) | 2677 |
| BseAI | TCCGGA | 1 cut(s) | 1987 |
| BseBI | CCWGG | 2 cut(s) | 817, 1436 |
| BseDI | CCNNGG | 6 cut(s) | 328, 816, 1435, 2109, 2559, 2615 |
| BseGI | GGATG | 9 cut(s) | 250, 877, 1135, 1453, 1726, 2400, 2571, 2613, 2625 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1171, 1234, 1896 |
| BseMI | GCAATG | 1 cut(s) | 2677 |
| BseNI | ACTGG | 4 cut(s) | 50, 510, 634, 2595 |
| BsePI | GCGCGC | 1 cut(s) | 138 |
| BseRI | GAGGAG | 3 cut(s) | 1891, 1934, 2264 |
| BseSI | GKGCMC | 4 cut(s) | 49, 420, 510, 1165 |
| BseXI | GCAGC | 9 cut(s) | 646, 1208, 1552, 1615, 1720, 2248, 2305, 2623, 2691 |
| BseYI | CCCAGC | 1 cut(s) | 2665 |
| Bsh1236I | CGCG | 1 cut(s) | 140 |
| BshFI | GGCC | 6 cut(s) | 853, 1027, 1163, 1238, 2258, 2627 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1496, 2332 |
| BsiSI | CCGG | 3 cut(s) | 1126, 1988, 2507 |
| BslFI | GGGAC | 1 cut(s) | 2156 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1171, 1234, 1896 |
| BsmAI | GTCTC | 5 cut(s) | 1218, 1346, 2486, 2532, 2700 |
| BsmFI | GGGAC | 1 cut(s) | 2156 |
| BsmI | GAATGC | 2 cut(s) | 325, 1294 |
| BsnI | GGCC | 6 cut(s) | 853, 1027, 1163, 1238, 2258, 2627 |
| Bso31I | GGTCTC | 3 cut(s) | 1218, 1346, 2532 |
| Bsp120I | GGGCCC | 1 cut(s) | 1161 |
| Bsp1286I | GDGCHC | 7 cut(s) | 49, 420, 510, 1165, 1496, 1926, 2332 |
| Bsp13I | TCCGGA | 1 cut(s) | 1987 |
| Bsp143I | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 717 |
| BspACI | CCGC | 3 cut(s) | 591, 1547, 2699 |
| BspANI | GGCC | 6 cut(s) | 853, 1027, 1163, 1238, 2258, 2627 |
| BspEI | TCCGGA | 1 cut(s) | 1987 |
| BspFNI | CGCG | 1 cut(s) | 140 |
| BspLI | GGNNCC | 3 cut(s) | 1163, 1164, 1923 |
| BspMAI | CTGCAG | 1 cut(s) | 1633 |
| BspMI | ACCTGC | 1 cut(s) | 2232 |
| BspPI | GGATC | 4 cut(s) | 554, 949, 1197, 1527 |
| BspTNI | GGTCTC | 3 cut(s) | 1218, 1346, 2532 |
| BsrDI | GCAATG | 1 cut(s) | 2677 |
| BsrI | ACTGG | 4 cut(s) | 50, 510, 634, 2595 |
| BssECI | CCNNGG | 6 cut(s) | 328, 816, 1435, 2109, 2559, 2615 |
| BssHII | GCGCGC | 1 cut(s) | 138 |
| BssMI | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| BssSI | CACGAG | 1 cut(s) | 1415 |
| BssT1I | CCWWGG | 3 cut(s) | 328, 2559, 2615 |
| Bst2BI | CACGAG | 1 cut(s) | 1415 |
| Bst2UI | CCWGG | 2 cut(s) | 817, 1436 |
| Bst4CI | ACNGT | 4 cut(s) | 1340, 1975, 2199, 2515 |
| Bst6I | CTCTTC | 6 cut(s) | 1074, 1203, 1432, 1568, 2340, 2363 |
| BstC8I | GCNNGC | 6 cut(s) | 140, 664, 706, 851, 924, 2455 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1232 |
| BstF5I | GGATG | 9 cut(s) | 250, 877, 1135, 1453, 1726, 2400, 2571, 2613, 2625 |
| BstFNI | CGCG | 1 cut(s) | 140 |
| BstH2I | RGCGCY | 1 cut(s) | 1903 |
| BstHHI | GCGC | 6 cut(s) | 140, 142, 325, 1902, 2241, 2542 |
| BstKTI | GATC | 5 cut(s) | 562, 944, 1205, 1522, 2649 |
| BstMAI | GTCTC | 5 cut(s) | 1218, 1346, 2486, 2532, 2700 |
| BstMBI | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 76, 548, 1405, 2270, 2318, 2327, 2450, 2676 |
| BstNI | CCWGG | 2 cut(s) | 817, 1436 |
| BstNSI | RCATGY | 3 cut(s) | 909, 926, 1106 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1641 |
| BstSCI | CCNGG | 4 cut(s) | 815, 1125, 1434, 2505 |
| BstSFI | CTRYAG | 2 cut(s) | 1629, 2445 |
| BstSLI | GKGCMC | 4 cut(s) | 49, 420, 510, 1165 |
| BstUI | CGCG | 1 cut(s) | 140 |
| BstV1I | GCAGC | 9 cut(s) | 646, 1208, 1552, 1615, 1720, 2248, 2305, 2623, 2691 |
| BstX2I | RGATCY | 4 cut(s) | 559, 941, 1202, 1519 |
| BstYI | RGATCY | 4 cut(s) | 559, 941, 1202, 1519 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2013 |
| BsuRI | GGCC | 6 cut(s) | 853, 1027, 1163, 1238, 2258, 2627 |
| BtsCI | GGATG | 9 cut(s) | 250, 877, 1135, 1453, 1726, 2400, 2571, 2613, 2625 |
| BtsI | GCAGTG | 1 cut(s) | 975 |
| BtsIMutI | CAGTG | 4 cut(s) | 627, 975, 1748, 1980 |
| BveI | ACCTGC | 1 cut(s) | 2232 |
| Cac8I | GCNNGC | 6 cut(s) | 140, 664, 706, 851, 924, 2455 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2129 |
| CfoI | GCGC | 6 cut(s) | 140, 142, 325, 1902, 2241, 2542 |
| Cfr13I | GGNCC | 4 cut(s) | 1161, 1162, 1910, 2625 |
| Csp6I | GTAC | 2 cut(s) | 231, 909 |
| CviAII | CATG | 5 cut(s) | 906, 923, 1103, 1349, 1481 |
| CviQI | GTAC | 2 cut(s) | 231, 909 |
| DpnI | GATC | 5 cut(s) | 561, 943, 1204, 1521, 2648 |
| DpnII | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| DraI | TTTAAA | 1 cut(s) | 1074 |
| DraIII | CACNNNGTG | 1 cut(s) | 1754 |
| Eam1104I | CTCTTC | 6 cut(s) | 1074, 1203, 1432, 1568, 2340, 2363 |
| EarI | CTCTTC | 6 cut(s) | 1074, 1203, 1432, 1568, 2340, 2363 |
| Ecl136II | GAGCTC | 1 cut(s) | 1494 |
| Eco130I | CCWWGG | 3 cut(s) | 328, 2559, 2615 |
| Eco24I | GRGCYC | 3 cut(s) | 1165, 1496, 1926 |
| Eco31I | GGTCTC | 3 cut(s) | 1218, 1346, 2532 |
| Eco32I | GATATC | 2 cut(s) | 465, 1942 |
| Eco47I | GGWCC | 1 cut(s) | 1910 |
| Eco53kI | GAGCTC | 1 cut(s) | 1494 |
| Eco57I | CTGAAG | 4 cut(s) | 768, 1424, 2238, 2364 |
| Eco81I | CCTNAGG | 1 cut(s) | 2013 |
| EcoICRI | GAGCTC | 1 cut(s) | 1494 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1232 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1161, 1162 |
| EcoRI | GAATTC | 1 cut(s) | 494 |
| EcoRII | CCWGG | 2 cut(s) | 815, 1434 |
| EcoRV | GATATC | 2 cut(s) | 465, 1942 |
| EcoT14I | CCWWGG | 3 cut(s) | 328, 2559, 2615 |
| EcoT38I | GRGCYC | 3 cut(s) | 1165, 1496, 1926 |
| ErhI | CCWWGG | 3 cut(s) | 328, 2559, 2615 |
| FaeI | CATG | 5 cut(s) | 909, 926, 1106, 1352, 1484 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1150, 1182 |
| FaqI | GGGAC | 1 cut(s) | 2156 |
| FatI | CATG | 5 cut(s) | 905, 922, 1102, 1348, 1480 |
| FblI | GTMKAC | 1 cut(s) | 624 |
| Fnu4HI | GCNGC | 9 cut(s) | 660, 1197, 1566, 1629, 1734, 2237, 2319, 2612, 2680 |
| FokI | GGATG | 9 cut(s) | 257, 884, 1142, 1460, 1733, 2407, 2558, 2620, 2632 |
| FriOI | GRGCYC | 3 cut(s) | 1165, 1496, 1926 |
| Fsp4HI | GCNGC | 9 cut(s) | 660, 1197, 1566, 1629, 1734, 2237, 2319, 2612, 2680 |
| FspBI | CTAG | 4 cut(s) | 740, 1431, 2223, 2496 |
| GlaI | GCGC | 6 cut(s) | 139, 141, 324, 1901, 2240, 2541 |
| GluI | GCNGC | 9 cut(s) | 660, 1197, 1566, 1629, 1734, 2237, 2319, 2612, 2680 |
| GsaI | CCCAGC | 1 cut(s) | 2669 |
| HaeII | RGCGCY | 1 cut(s) | 1903 |
| HaeIII | GGCC | 6 cut(s) | 853, 1027, 1163, 1238, 2258, 2627 |
| HapII | CCGG | 3 cut(s) | 1126, 1988, 2507 |
| HhaI | GCGC | 6 cut(s) | 140, 142, 325, 1902, 2241, 2542 |
| Hin1II | CATG | 5 cut(s) | 909, 926, 1106, 1352, 1484 |
| Hin6I | GCGC | 6 cut(s) | 138, 140, 323, 1900, 2239, 2540 |
| HinP1I | GCGC | 6 cut(s) | 138, 140, 323, 1900, 2239, 2540 |
| HincII | GTYRAC | 1 cut(s) | 802 |
| HindII | GTYRAC | 1 cut(s) | 802 |
| HindIII | AAGCTT | 2 cut(s) | 1461, 2455 |
| HinfI | GANTC | 9 cut(s) | 35, 221, 311, 578, 812, 830, 1256, 1281, 2438 |
| HpaI | GTTAAC | 1 cut(s) | 802 |
| HpaII | CCGG | 3 cut(s) | 1126, 1988, 2507 |
| HphI | GGTGA | 3 cut(s) | 441, 1451, 2521 |
| Hpy166II | GTNNAC | 4 cut(s) | 233, 625, 802, 1871 |
| Hpy8I | GTNNAC | 4 cut(s) | 233, 625, 802, 1871 |
| HpyCH4III | ACNGT | 4 cut(s) | 1340, 1975, 2199, 2515 |
| HpyCH4IV | ACGT | 1 cut(s) | 1777 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 76, 548, 1405, 2270, 2318, 2327, 2450, 2676 |
| HpySE526I | ACGT | 1 cut(s) | 1777 |
| Hsp92II | CATG | 5 cut(s) | 909, 926, 1106, 1352, 1484 |
| HspAI | GCGC | 6 cut(s) | 138, 140, 323, 1900, 2239, 2540 |
| Kpn2I | TCCGGA | 1 cut(s) | 1987 |
| KspAI | GTTAAC | 1 cut(s) | 802 |
| Kzo9I | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| LmnI | GCTCC | 5 cut(s) | 919, 1345, 1921, 2137, 2687 |
| Lsp1109I | GCAGC | 9 cut(s) | 646, 1208, 1552, 1615, 1720, 2248, 2305, 2623, 2691 |
| MaeI | CTAG | 4 cut(s) | 740, 1431, 2223, 2496 |
| MaeII | ACGT | 1 cut(s) | 1777 |
| MaeIII | GTNAC | 4 cut(s) | 1098, 1555, 2509, 2515 |
| MalI | GATC | 5 cut(s) | 561, 943, 1204, 1521, 2648 |
| MboI | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| MflI | RGATCY | 4 cut(s) | 559, 941, 1202, 1519 |
| MhlI | GDGCHC | 7 cut(s) | 49, 420, 510, 1165, 1496, 1926, 2332 |
| MlyI | GAGTC | 2 cut(s) | 824, 1290 |
| MmeI | TCCRAC | 1 cut(s) | 2226 |
| MroI | TCCGGA | 1 cut(s) | 1987 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2067 |
| MspA1I | CMGCKG | 1 cut(s) | 2701 |
| MspI | CCGG | 3 cut(s) | 1126, 1988, 2507 |
| MspR9I | CCNGG | 4 cut(s) | 817, 1127, 1436, 2507 |
| Mva1269I | GAATGC | 2 cut(s) | 325, 1294 |
| MvaI | CCWGG | 2 cut(s) | 817, 1436 |
| MvnI | CGCG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 76, 548, 1405, 2270, 2318, 2327, 2450, 2676 |
| NciI | CCSGG | 2 cut(s) | 1127, 2507 |
| NdeII | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| NlaIII | CATG | 5 cut(s) | 909, 926, 1106, 1352, 1484 |
| NlaIV | GGNNCC | 3 cut(s) | 1163, 1164, 1923 |
| NmuCI | GTSAC | 2 cut(s) | 1555, 2509 |
| NspI | RCATGY | 3 cut(s) | 909, 926, 1106 |
| PaeI | GCATGC | 1 cut(s) | 926 |
| PauI | GCGCGC | 1 cut(s) | 138 |
| PciI | ACATGT | 2 cut(s) | 905, 1102 |
| PctI | GAATGC | 2 cut(s) | 325, 1294 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1536 |
| PfeI | GAWTC | 7 cut(s) | 35, 221, 311, 578, 812, 1256, 2438 |
| PkrI | GCNGC | 9 cut(s) | 661, 1198, 1567, 1630, 1735, 2238, 2320, 2613, 2681 |
| PleI | GAGTC | 2 cut(s) | 824, 1289 |
| PpsI | GAGTC | 2 cut(s) | 824, 1289 |
| PscI | ACATGT | 2 cut(s) | 905, 1102 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1641 |
| PshBI | ATTAAT | 1 cut(s) | 1268 |
| PsiI | TTATAA | 1 cut(s) | 1317 |
| Psp124BI | GAGCTC | 1 cut(s) | 1496 |
| Psp1406I | AACGTT | 1 cut(s) | 1777 |
| Psp6I | CCWGG | 2 cut(s) | 815, 1434 |
| PspFI | CCCAGC | 1 cut(s) | 2665 |
| PspGI | CCWGG | 2 cut(s) | 815, 1434 |
| PspN4I | GGNNCC | 3 cut(s) | 1163, 1164, 1923 |
| PspOMI | GGGCCC | 1 cut(s) | 1161 |
| PspPI | GGNCC | 4 cut(s) | 1161, 1162, 1910, 2625 |
| PstI | CTGCAG | 1 cut(s) | 1633 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2129 |
| PsuI | RGATCY | 4 cut(s) | 559, 941, 1202, 1519 |
| PteI | GCGCGC | 1 cut(s) | 138 |
| RsaI | GTAC | 2 cut(s) | 232, 910 |
| RsaNI | GTAC | 2 cut(s) | 231, 909 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2067 |
| SacI | GAGCTC | 1 cut(s) | 1496 |
| SatI | GCNGC | 9 cut(s) | 660, 1197, 1566, 1629, 1734, 2237, 2319, 2612, 2680 |
| Sau3AI | GATC | 5 cut(s) | 559, 941, 1202, 1519, 2646 |
| Sau96I | GGNCC | 4 cut(s) | 1161, 1162, 1910, 2625 |
| SchI | GAGTC | 2 cut(s) | 824, 1290 |
| ScrFI | CCNGG | 4 cut(s) | 817, 1127, 1436, 2507 |
| SduI | GDGCHC | 7 cut(s) | 49, 420, 510, 1165, 1496, 1926, 2332 |
| SfcI | CTRYAG | 2 cut(s) | 1629, 2445 |
| SinI | GGWCC | 1 cut(s) | 1910 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2067 |
| SmlI | CTYRAG | 3 cut(s) | 1560, 1849, 2307 |
| SmoI | CTYRAG | 3 cut(s) | 1560, 1849, 2307 |
| SpeI | ACTAGT | 1 cut(s) | 739 |
| SphI | GCATGC | 1 cut(s) | 926 |
| SsiI | CCGC | 3 cut(s) | 591, 1547, 2699 |
| SspMI | CTAG | 4 cut(s) | 740, 1431, 2223, 2496 |
| SstI | GAGCTC | 1 cut(s) | 1496 |
| StyD4I | CCNGG | 4 cut(s) | 815, 1125, 1434, 2505 |
| StyI | CCWWGG | 3 cut(s) | 328, 2559, 2615 |
| TaaI | ACNGT | 4 cut(s) | 1340, 1975, 2199, 2515 |
| TaiI | ACGT | 1 cut(s) | 1780 |
| TaqI | TCGA | 2 cut(s) | 440, 1182 |
| TatI | WGTACW | 1 cut(s) | 230 |
| TfiI | GAWTC | 7 cut(s) | 35, 221, 311, 578, 812, 1256, 2438 |
| TscAI | CASTG | 4 cut(s) | 634, 982, 1755, 1980 |
| TseFI | GTSAC | 2 cut(s) | 1555, 2509 |
| TseI | GCWGC | 9 cut(s) | 659, 1196, 1565, 1628, 1733, 2236, 2318, 2611, 2679 |
| Tsp45I | GTSAC | 2 cut(s) | 1555, 2509 |
| TspDTI | ATGAA | 7 cut(s) | 423, 747, 1080, 1464, 1599, 1620, 2063 |
| TspGWI | ACGGA | 2 cut(s) | 926, 1826 |
| TspRI | CASTG | 4 cut(s) | 634, 982, 1755, 1980 |
| VpaK11BI | GGWCC | 1 cut(s) | 1910 |
| VspI | ATTAAT | 1 cut(s) | 1268 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1232 |
| XapI | RAATTY | 6 cut(s) | 122, 128, 349, 494, 1069, 2475 |
| XceI | RCATGY | 3 cut(s) | 909, 926, 1106 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1963 |
| XmiI | GTMKAC | 1 cut(s) | 624 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1536 |
| XspI | CTAG | 4 cut(s) | 740, 1431, 2223, 2496 |