Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009613

Physical Location & Seq

Genomic Coordinates Reverse (-)

60902 .. 64179

Gene Structure 3278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGGGGAGTGGGTCGTTGGAGCTTTCATTAACCTTTTTGGCAGCATTGCCATCAACTTTGGAACTAACCTTCTCAAATTGGGGCATAACGAGAGAGAGAGACATTCAATACTAGAAAGTGATGGAGGAAATGGAAAGCTTCCTTTGAAGCCTATTATACACTATCAGACATGGAGAGTTGGCTTTTTATTTTTTGCTCTTGGTAATTGCCTAAATTTTGTATCCTTTGGATATGCTGCTCAGTCACTTCTTGCGGCACTGGGTTCTGTTCAGTTTGTATCCAACATTGCCTTTGCTTACTTTGTGTTAAACAAAATGGTGACTGTAAAGGTAATGGTTGCCACAGCCTTTATTGTTATCGGGAATATTTTTCTTGTTGCTTTTGGCAACCACCAGTCACCTGTATACACACCTGAACAGCTGGCCGAGAAATACAGCAATATTGCATTCCTATTTTACTGTATGATTTTGGTTTTAGTTGTTGCCTTGCATCACTCCATTTACAGGAGAGGAGAACTTCTGCATGCTGTTTCTGGCCAGGATCTGAGACCCTATTGGCATATGCTGCTTCCTTTTTCCTATGCTATAGTTTCAGGTGCTGATCGATCATTCTCAGTGTTGTTTGCAAAATCTCTATCTAACCTGCTACGTTTGGCCATGTCTAGCAGTTATCAGTTACATAGCTGGTTCACATACTCCATGCTCCTTTTATTTCTAAGTACAGCTGGATTTTGGATGGCTCGTTTGAACGAAGGATTGTCATTTTTCGATGCAATTCTTATTGTTCCTATGTTTCAGATTGCTTGGACATTCTTTTCCATTTGTACAGGATTTGTATATTTTCAAGAATACCAGGTATTGGATGCACTAAGGACAACTATGTTCATACTGGGAATGATGTCTGTGTTCGTAGGCATTACTTTGCTTGCACCTGATGATTCCAGAGGTGCTGAAGTCAAAGAAAATCCATCTTTAGTTTCTGTGGTGTCTTCAAGCATTCCAAAAGACATGGGCAGGTTTGCTGTTTCATCTGAAGATGTACAAATTAGAGACACACGATCATTTGTGCAAGGAATCCTGGTGAAGATTTCAGATGCGATAGTGAAGGCAAAGACTGCTTGTGCGTTGTCACTGGGATTTGGAGATGATTCAATCAATGCATCTGCTGTCCTTGTGATGCCTATGGTGTCATCAAAGATAACGGGCTTTAGAGGAAATGGGTTTGACCGCGCCAAGATTTTCTCCATGAGAAATTCTGGTTGGACCAAGATGTCCATGGATGAAGATGCTACAAAAATGCTGGAGACAAACCCCGTGCTCTCCGAGAGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0012505 GO:0015693 GO:0016020 GO:0030001 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0070838 GO:0071944 GO:0072511 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mg_trans_NIPA

Protein Analysis

445

Amino Acids

49.23

Weight (kDa)

8.25

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mg_trans_NIPA	PF05653	6 - 310	5.4e-21	Magnesium transporter NIPA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009613)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26670 AT3G26670 AT3G26670 AT3G26670
fragaria_vesca	FvH4_6g54450
malus_domestica	MD09G1001000.v1.1 MD17G1004100.v1.1
prunus_persica	Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1 Prupe.3G315100_v2.0.a1
pyrus_communis	pycom17g00080
rosa_chinensis	RchiOBHm_Chr2g0176711
rosa_laevigata	RLG00000022438
rosa_multiflora	Rmu_ssc0000468.1_g000006
rosa_roxburghii	Rroxscaffold_2G00076230
rosa_rugosa	Rorug02G0597800 Rorug02G0598000
rosa_samantha	Rh2AG675200 Rh2BG686400 Rh2DG700500
rosa_wichuraiana	Rw2G055420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1270
Acc36I	ACCTGC	2 cut(s)	651, 1005
AccB7I	CCANNNNNTGG	1 cut(s)	859
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	1230
AciI	CCGC	2 cut(s)	254, 1228
AclWI	GGATC	1 cut(s)	549
AcoI	YGGCCR	3 cut(s)	423, 535, 654
AcsI	RAATTY	2 cut(s)	214, 1252
AcuI	CTGAAG	2 cut(s)	972, 1053
AfaI	GTAC	3 cut(s)	721, 826, 1041
AfiI	CCNNNNNNNGG	2 cut(s)	504, 859
AgsI	TTSAA	6 cut(s)	108, 148, 748, 845, 993, 1152
AjnI	CCWGG	3 cut(s)	537, 852, 1077
AjuI	GAANNNNNNNTTGG	2 cut(s)	1243, 1275
AluBI	AGCT	5 cut(s)	23, 139, 421, 684, 725
AluI	AGCT	5 cut(s)	23, 139, 421, 684, 725
Alw21I	GWGCWC	1 cut(s)	1320
Alw26I	GTCTC	4 cut(s)	94, 541, 1044, 1298
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	2 cut(s)	544, 599
AoxI	GGCC	3 cut(s)	423, 535, 654
ApeKI	GCWGC	3 cut(s)	42, 236, 565
ApoI	RAATTY	2 cut(s)	214, 1252
AspLEI	GCGC	1 cut(s)	1232
AspS9I	GGNCC	1 cut(s)	1263
AsuHPI	GGTGA	3 cut(s)	331, 390, 1093
AvaII	GGWCC	1 cut(s)	1263
BalI	TGGCCA	2 cut(s)	537, 656
BanII	GRGCYC	1 cut(s)	1331
BbsI	GAAGAC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	1320
BbvI	GCAGC	3 cut(s)	54, 223, 552
BccI	CCATC	4 cut(s)	59, 116, 730, 976
BciT130I	CCWGG	3 cut(s)	539, 854, 1079
BciVI	GTATCC	2 cut(s)	232, 289
BcoDI	GTCTC	4 cut(s)	94, 541, 1044, 1298
BfaI	CTAG	2 cut(s)	113, 663
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	2 cut(s)	651, 1005
BfuI	GTATCC	2 cut(s)	232, 289
BisI	GCNGC	4 cut(s)	43, 237, 255, 566
BlsI	GCNGC	4 cut(s)	44, 238, 256, 567
Bme1390I	CCNGG	3 cut(s)	539, 854, 1079
Bme18I	GGWCC	1 cut(s)	1263
BmgT120I	GGNCC	1 cut(s)	1263
BmrFI	CCNGG	3 cut(s)	539, 854, 1079
BmrI	ACTGGG	3 cut(s)	269, 899, 1142
BmsI	GCATC	7 cut(s)	499, 760, 853, 1084, 1167, 1169, 1276
BmuI	ACTGGG	3 cut(s)	269, 899, 1142
BpiI	GAAGAC	1 cut(s)	981
BpmI	CTGGAG	1 cut(s)	1322
Bsa29I	ATCGAT	1 cut(s)	604
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	1 cut(s)	1275
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 859
Bse1I	ACTGG	4 cut(s)	264, 394, 894, 1137
Bse3DI	GCAATG	2 cut(s)	45, 285
BseBI	CCWGG	3 cut(s)	539, 854, 1079
BseCI	ATCGAT	1 cut(s)	604
BseDI	CCNNGG	1 cut(s)	1275
BseGI	GGATG	3 cut(s)	741, 868, 1285
BseLI	CCNNNNNNNGG	2 cut(s)	504, 859
BseMI	GCAATG	2 cut(s)	45, 285
BseMII	CTCAG	3 cut(s)	254, 536, 627
BseNI	ACTGG	4 cut(s)	264, 394, 894, 1137
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	54, 223, 552
Bsh1236I	CGCG	1 cut(s)	1230
BshFI	GGCC	3 cut(s)	425, 537, 656
BshVI	ATCGAT	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	1320
BslI	CCNNNNNNNGG	2 cut(s)	504, 859
BsmAI	GTCTC	4 cut(s)	94, 541, 1044, 1298
BsmI	GAATGC	2 cut(s)	446, 996
BsnI	GGCC	3 cut(s)	425, 537, 656
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	2 cut(s)	1320, 1331
Bsp1407I	TGTACA	2 cut(s)	824, 1039
Bsp143I	GATC	4 cut(s)	541, 601, 605, 1058
Bsp19I	CCATGG	1 cut(s)	1275
BspACI	CCGC	2 cut(s)	254, 1228
BspANI	GGCC	3 cut(s)	425, 537, 656
BspCNI	CTCAG	3 cut(s)	253, 537, 626
BspDI	ATCGAT	1 cut(s)	604
BspFNI	CGCG	1 cut(s)	1230
BspMI	ACCTGC	2 cut(s)	651, 1005
BspPI	GGATC	1 cut(s)	549
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	2 cut(s)	45, 285
BsrGI	TGTACA	2 cut(s)	824, 1039
BsrI	ACTGG	4 cut(s)	264, 394, 894, 1137
BssECI	CCNNGG	1 cut(s)	1275
BssMI	GATC	4 cut(s)	541, 601, 605, 1058
BssNAI	GTATAC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	1275
Bst1107I	GTATAC	1 cut(s)	406
Bst2UI	CCWGG	3 cut(s)	539, 854, 1079
Bst4CI	ACNGT	2 cut(s)	325, 461
BstAPI	GCANNNNNTGC	2 cut(s)	565, 1115
BstAUI	TGTACA	2 cut(s)	824, 1039
BstC8I	GCNNGC	3 cut(s)	423, 525, 927
BstDEI	CTNAG	5 cut(s)	240, 545, 613, 716, 869
BstDSI	CCRYGG	1 cut(s)	1275
BstF5I	GGATG	3 cut(s)	741, 868, 1285
BstFNI	CGCG	1 cut(s)	1230
BstHHI	GCGC	1 cut(s)	1232
BstKTI	GATC	4 cut(s)	544, 604, 608, 1061
BstMAI	GTCTC	4 cut(s)	94, 541, 1044, 1298
BstMBI	GATC	4 cut(s)	541, 601, 605, 1058
BstMWI	GCNNNNNNNGC	2 cut(s)	565, 1115
BstNI	CCWGG	3 cut(s)	539, 854, 1079
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	3 cut(s)	537, 852, 1077
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	1230
BstV1I	GCAGC	3 cut(s)	54, 223, 552
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BstZ17I	GTATAC	1 cut(s)	406
Bsu15I	ATCGAT	1 cut(s)	604
BsuI	GTATCC	2 cut(s)	232, 289
BsuRI	GGCC	3 cut(s)	425, 537, 656
BsuTUI	ATCGAT	1 cut(s)	604
BtgI	CCRYGG	1 cut(s)	1275
BtsCI	GGATG	3 cut(s)	741, 868, 1285
BtsIMutI	CAGTG	3 cut(s)	257, 621, 1130
BveI	ACCTGC	2 cut(s)	651, 1005
Cac8I	GCNNGC	3 cut(s)	423, 525, 927
CaiI	CAGNNNCTG	2 cut(s)	544, 599
CfoI	GCGC	1 cut(s)	1232
Cfr13I	GGNCC	1 cut(s)	1263
ClaI	ATCGAT	1 cut(s)	604
CsiI	ACCWGGT	1 cut(s)	852
Csp6I	GTAC	3 cut(s)	720, 825, 1040
CviAII	CATG	7 cut(s)	171, 524, 658, 700, 1009, 1246, 1276
CviQI	GTAC	3 cut(s)	720, 825, 1040
DdeI	CTNAG	5 cut(s)	240, 545, 613, 716, 869
DpnI	GATC	4 cut(s)	543, 603, 607, 1060
DpnII	GATC	4 cut(s)	541, 601, 605, 1058
DrdI	GACNNNNNNGTC	1 cut(s)	1270
DseDI	GACNNNNNNGTC	1 cut(s)	1270
EaeI	YGGCCR	3 cut(s)	423, 535, 654
Eco130I	CCWWGG	1 cut(s)	1275
Eco24I	GRGCYC	1 cut(s)	1331
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	1263
Eco57I	CTGAAG	2 cut(s)	972, 1053
EcoRII	CCWGG	3 cut(s)	537, 852, 1077
EcoT14I	CCWWGG	1 cut(s)	1275
EcoT22I	ATGCAT	1 cut(s)	1162
EcoT38I	GRGCYC	1 cut(s)	1331
ErhI	CCWWGG	1 cut(s)	1275
FaeI	CATG	7 cut(s)	174, 527, 661, 703, 1012, 1249, 1279
FatI	CATG	7 cut(s)	170, 523, 657, 699, 1008, 1245, 1275
FauNDI	CATATG	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	43, 237, 255, 566
FokI	GGATG	3 cut(s)	748, 875, 1292
FriOI	GRGCYC	1 cut(s)	1331
Fsp4HI	GCNGC	4 cut(s)	43, 237, 255, 566
FspBI	CTAG	2 cut(s)	113, 663
GlaI	GCGC	1 cut(s)	1231
GluI	GCNGC	4 cut(s)	43, 237, 255, 566
GsuI	CTGGAG	1 cut(s)	1322
HaeIII	GGCC	3 cut(s)	425, 537, 656
HhaI	GCGC	1 cut(s)	1232
Hin1II	CATG	7 cut(s)	174, 527, 661, 703, 1012, 1249, 1279
Hin6I	GCGC	1 cut(s)	1230
HinP1I	GCGC	1 cut(s)	1230
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	3 cut(s)	938, 1074, 1148
HphI	GGTGA	3 cut(s)	331, 390, 1093
Hpy166II	GTNNAC	2 cut(s)	406, 690
Hpy188I	TCNGA	6 cut(s)	168, 546, 798, 1033, 1093, 1324
Hpy188III	TCNNGA	3 cut(s)	361, 845, 942
Hpy8I	GTNNAC	2 cut(s)	406, 690
HpyAV	CCTTC	3 cut(s)	80, 746, 1099
HpyCH4III	ACNGT	2 cut(s)	325, 461
HpyCH4IV	ACGT	1 cut(s)	649
HpyCH4V	TGCA	9 cut(s)	446, 490, 523, 626, 773, 866, 929, 1069, 1160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	565, 1115
HpyF3I	CTNAG	5 cut(s)	240, 545, 613, 716, 869
HpySE526I	ACGT	1 cut(s)	649
Hsp92II	CATG	7 cut(s)	174, 527, 661, 703, 1012, 1249, 1279
HspAI	GCGC	1 cut(s)	1230
Kzo9I	GATC	4 cut(s)	541, 601, 605, 1058
LmnI	GCTCC	2 cut(s)	20, 708
Lsp1109I	GCAGC	3 cut(s)	54, 223, 552
LweI	GCATC	7 cut(s)	499, 760, 853, 1084, 1167, 1169, 1276
MabI	ACCWGGT	1 cut(s)	852
MaeI	CTAG	2 cut(s)	113, 663
MaeII	ACGT	1 cut(s)	649
MaeIII	GTNAC	5 cut(s)	243, 319, 396, 675, 1128
MalI	GATC	4 cut(s)	543, 603, 607, 1060
MboI	GATC	4 cut(s)	541, 601, 605, 1058
MboII	GAAGA	4 cut(s)	981, 1046, 1096, 1295
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	1320, 1331
MlsI	TGGCCA	2 cut(s)	537, 656
MluCI	AATT	6 cut(s)	77, 205, 214, 774, 1044, 1252
MluNI	TGGCCA	2 cut(s)	537, 656
MmeI	TCCRAC	2 cut(s)	306, 1241
MnlI	CCTC	4 cut(s)	119, 503, 938, 1205
Mox20I	TGGCCA	2 cut(s)	537, 656
Mph1103I	ATGCAT	1 cut(s)	1162
MscI	TGGCCA	2 cut(s)	537, 656
MseI	TTAA	2 cut(s)	30, 308
Msp20I	TGGCCA	2 cut(s)	537, 656
MspA1I	CMGCKG	2 cut(s)	421, 725
MspR9I	CCNGG	3 cut(s)	539, 854, 1079
Mva1269I	GAATGC	2 cut(s)	446, 996
MvaI	CCWGG	3 cut(s)	539, 854, 1079
MvnI	CGCG	1 cut(s)	1230
MwoI	GCNNNNNNNGC	2 cut(s)	565, 1115
NcoI	CCATGG	1 cut(s)	1275
NdeI	CATATG	1 cut(s)	561
NdeII	GATC	4 cut(s)	541, 601, 605, 1058
NlaIII	CATG	7 cut(s)	174, 527, 661, 703, 1012, 1249, 1279
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	4 cut(s)	243, 319, 396, 1128
NsiI	ATGCAT	1 cut(s)	1162
NspI	RCATGY	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	527
PctI	GAATGC	2 cut(s)	446, 996
PfeI	GAWTC	3 cut(s)	938, 1074, 1148
PflMI	CCANNNNNTGG	1 cut(s)	859
PkrI	GCNGC	4 cut(s)	44, 238, 256, 567
Psp6I	CCWGG	3 cut(s)	537, 852, 1077
PspGI	CCWGG	3 cut(s)	537, 852, 1077
PspPI	GGNCC	1 cut(s)	1263
PstNI	CAGNNNCTG	2 cut(s)	544, 599
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	2 cut(s)	421, 725
RsaI	GTAC	3 cut(s)	721, 826, 1041
RsaNI	GTAC	3 cut(s)	720, 825, 1040
SaqAI	TTAA	2 cut(s)	30, 308
SatI	GCNGC	4 cut(s)	43, 237, 255, 566
Sau3AI	GATC	4 cut(s)	541, 601, 605, 1058
Sau96I	GGNCC	1 cut(s)	1263
ScrFI	CCNGG	3 cut(s)	539, 854, 1079
SduI	GDGCHC	2 cut(s)	1320, 1331
SexAI	ACCWGGT	1 cut(s)	852
SfaNI	GCATC	7 cut(s)	499, 760, 853, 1084, 1167, 1169, 1276
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	1263
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	6 cut(s)	77, 205, 214, 774, 1044, 1252
SsiI	CCGC	2 cut(s)	254, 1228
SspI	AATATT	2 cut(s)	367, 442
SspMI	CTAG	2 cut(s)	113, 663
StyD4I	CCNGG	3 cut(s)	537, 852, 1077
StyI	CCWWGG	1 cut(s)	1275
TaaI	ACNGT	2 cut(s)	325, 461
TaiI	ACGT	1 cut(s)	652
TaqI	TCGA	2 cut(s)	604, 768
TasI	AATT	6 cut(s)	77, 205, 214, 774, 1044, 1252
TatI	WGTACW	3 cut(s)	719, 824, 1039
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	938, 1074, 1148
Tru1I	TTAA	2 cut(s)	30, 308
Tru9I	TTAA	2 cut(s)	30, 308
TscAI	CASTG	3 cut(s)	264, 621, 1137
TseFI	GTSAC	4 cut(s)	243, 319, 396, 1128
TseI	GCWGC	3 cut(s)	42, 236, 565
Tsp45I	GTSAC	4 cut(s)	243, 319, 396, 1128
TspDTI	ATGAA	4 cut(s)	16, 874, 1017, 1296
TspRI	CASTG	3 cut(s)	264, 621, 1137
Van91I	CCANNNNNTGG	1 cut(s)	859
VpaK11BI	GGWCC	1 cut(s)	1263
XapI	RAATTY	2 cut(s)	214, 1252
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1273
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	2 cut(s)	113, 663
Zsp2I	ATGCAT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.