Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016211

Physical Location & Seq

Genomic Coordinates Reverse (-)

514691 .. 517407

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGAGCTCCTCCGTCGTCGCCTTCAACCCCCTAACAGGGCGGAGAGCGCGCCAAACAGCAGCCGGATTCTCACCCAAATCACGTCCAAGGCAAGTATCAAGTCCAAATTTTGGGAGTGTGAATTTCCCAAAACCCCAATCTGTAAAATTCAAATGCAACTACTCCAGCTTCGAAGTTAGCAATGTCAGCTACCAACCGCCGGGGACTGAGCTCAGCCTCCTCAGTGATGTTAGCCTTTCGCTTCCGGAGAAAAGCTTTGGCTTAATTTTTGGGCGGAGCGGTAGCGGAAAGACTACTCTTGTGCAGCTTCTTGCAGGGATGAGCAAACCAACTTCAGGTTCAATTTACATTCAAAAATATGGAAATGATGGCAACCCGGTTCAGTCTCCCGAACCCTTATCAGCCGGAAGAGTTGGCATTGTGTTTCAGTTTCCAGAGAGGTATTTTGTGGCAGATAATGTGCTCGATGAAGTTACATTTGGGTGGCCAAGGCAAAAGGGTGATCTTCAAATGAAGGAGCATCTTGCTCTGAGACTCCAAAGAGCAATCAATTGGGTTGGTTTAAGTGGCATCTCATTGGATAGAGATCCTCATTCCCTAAGTGGTGGCTACAAACGTCGGCTTGCCTTGGCAATTCAACTGGTGCAAGTCCCTGATTTATTGATACTGGATGAACCTCTTGCCGGTCTTGATTGGAAGGCACGTGCAGATGTTGTGAAGCTTCTCAAGCATCTAAGGAAAGAATTGACTATACTAGTTGTCAGCCATGATCTCAAGGAGTTAGCAGCTATAGTGGATCGTTCTTGGAGGATGGAGATGGGTGGGGTTCTTAGGGAAGAGCCCCTACCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

286

Amino Acids

31.37

Weight (kDa)

9.68

Isoelectric Point (pI)

40.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	75 - 229	2.2e-24	ABC transporter
SMC_N	PF02463	84 - 264	2.6e-06	RecF/RecN/SMC N terminal domain
AAA_21	PF13304	196 - 261	2.4e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14100
fragaria_vesca	FvH4_6g53800
malus_domestica	MD17G1001700.v1.1
prunus_persica	Prupe.3G308400_v2.0.a1
pyrus_communis	pycom17g00710
rosa_chinensis	RchiOBHm_Chr2g0175931
rosa_laevigata	RLG00000022366
rosa_roxburghii	Rroxscaffold_2G00076920
rosa_rugosa	Rorug02G0588700 Rorug02G0588700
rosa_samantha	Rh2AG667900 Rh2BG679400 Rh2CG642200 Rh2DG692900
rosa_wichuraiana	Rw2G054750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	282
AccII	CGCG	1 cut(s)	52
AccIII	TCCGGA	1 cut(s)	247
AciI	CCGC	5 cut(s)	43, 200, 277, 282, 288
AclWI	GGATC	2 cut(s)	584, 807
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	3 cut(s)	109, 124, 149
AcuI	CTGAAG	1 cut(s)	321
AcvI	CACGTG	1 cut(s)	707
AfiI	CCNNNNNNNGG	6 cut(s)	38, 39, 113, 202, 338, 686
AgsI	TTSAA	6 cut(s)	28, 154, 345, 356, 512, 641
AhlI	ACTAGT	1 cut(s)	757
AjiI	CACGTC	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	4 cut(s)	325, 357, 465, 497
AluBI	AGCT	8 cut(s)	9, 171, 192, 214, 258, 310, 724, 791
AluI	AGCT	8 cut(s)	9, 171, 192, 214, 258, 310, 724, 791
Alw21I	GWGCWC	3 cut(s)	11, 216, 468
Alw26I	GTCTC	2 cut(s)	393, 529
AlwI	GGATC	2 cut(s)	584, 807
Aor13HI	TCCGGA	1 cut(s)	247
AoxI	GGCC	1 cut(s)	488
ApeKI	GCWGC	3 cut(s)	62, 307, 788
ApoI	RAATTY	3 cut(s)	109, 124, 149
AspLEI	GCGC	2 cut(s)	52, 54
AsuC2I	CCSGG	2 cut(s)	204, 380
AsuHPI	GGTGA	2 cut(s)	66, 515
AsuII	TTCGAA	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	11, 216, 846
BarI	GAAGNNNNNNTAC	1 cut(s)	831
BbrPI	CACGTG	1 cut(s)	707
Bbv12I	GWGCWC	3 cut(s)	11, 216, 468
BbvI	GCAGC	3 cut(s)	74, 319, 800
BccI	CCATC	3 cut(s)	365, 808, 814
BcnI	CCSGG	2 cut(s)	204, 380
BcoDI	GTCTC	2 cut(s)	393, 529
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	792
BisI	GCNGC	3 cut(s)	63, 308, 789
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	3 cut(s)	64, 309, 790
Bme1390I	CCNGG	2 cut(s)	204, 380
BmgBI	CACGTC	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	204, 380
BmsI	GCATC	3 cut(s)	532, 582, 742
BpmI	CTGGAG	1 cut(s)	151
Bpu1102I	GCTNAGC	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	2 cut(s)	713, 761
BpuMI	CCSGG	2 cut(s)	204, 380
BsaAI	YACGTR	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	588
BsaJI	CCNNGG	4 cut(s)	89, 203, 491, 630
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 39, 113, 202, 338, 686
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	2 cut(s)	648, 675
Bse3DI	GCAATG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	588
BseAI	TCCGGA	1 cut(s)	247
BseDI	CCNNGG	4 cut(s)	89, 203, 491, 630
BseGI	GGATG	3 cut(s)	327, 679, 819
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	6 cut(s)	38, 39, 113, 202, 338, 686
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	4 cut(s)	201, 229, 238, 524
BseNI	ACTGG	2 cut(s)	648, 675
BsePI	GCGCGC	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	3 cut(s)	74, 319, 800
BsgI	GTGCAG	2 cut(s)	326, 729
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	490
BsiHKAI	GWGCWC	3 cut(s)	11, 216, 468
BsiSI	CCGG	6 cut(s)	66, 203, 248, 380, 408, 687
BslFI	GGGAC	2 cut(s)	220, 638
BslI	CCNNNNNNNGG	6 cut(s)	38, 39, 113, 202, 338, 686
BsmAI	GTCTC	2 cut(s)	393, 529
BsmFI	GGGAC	2 cut(s)	220, 638
BsnI	GGCC	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	4 cut(s)	11, 216, 468, 846
Bsp13I	TCCGGA	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	505, 589, 772, 799
Bsp1720I	GCTNAGC	1 cut(s)	215
BspACI	CCGC	5 cut(s)	43, 200, 277, 282, 288
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	4 cut(s)	202, 228, 237, 525
BspEI	TCCGGA	1 cut(s)	247
BspFNI	CGCG	1 cut(s)	52
BspPI	GGATC	2 cut(s)	584, 807
BspQI	GCTCTTC	1 cut(s)	834
BspT104I	TTCGAA	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	648, 675
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	4 cut(s)	89, 203, 491, 630
BssHII	GCGCGC	1 cut(s)	50
BssMI	GATC	4 cut(s)	505, 589, 772, 799
BssT1I	CCWWGG	3 cut(s)	89, 491, 630
Bst6I	CTCTTC	2 cut(s)	406, 834
BstBAI	YACGTR	1 cut(s)	707
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	7, 52, 627
BstDEI	CTNAG	7 cut(s)	210, 215, 224, 533, 602, 737, 833
BstF5I	GGATG	3 cut(s)	327, 679, 819
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	52, 54
BstKTI	GATC	4 cut(s)	508, 592, 775, 802
BstMAI	GTCTC	2 cut(s)	393, 529
BstMBI	GATC	4 cut(s)	505, 589, 772, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 189, 730
BstSCI	CCNGG	2 cut(s)	202, 378
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	74, 319, 800
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	490
BtrI	CACGTC	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	327, 679, 819
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	7, 52, 627
CfoI	GCGC	2 cut(s)	52, 54
Cfr10I	RCCGGY	1 cut(s)	686
CviAII	CATG	1 cut(s)	770
DdeI	CTNAG	7 cut(s)	210, 215, 224, 533, 602, 737, 833
DpnI	GATC	4 cut(s)	507, 591, 774, 801
DpnII	GATC	4 cut(s)	505, 589, 772, 799
EaeI	YGGCCR	1 cut(s)	488
Eam1104I	CTCTTC	2 cut(s)	406, 834
EarI	CTCTTC	2 cut(s)	406, 834
EciI	GGCGGA	2 cut(s)	58, 292
Ecl136II	GAGCTC	2 cut(s)	9, 214
Eco130I	CCWWGG	3 cut(s)	89, 491, 630
Eco24I	GRGCYC	3 cut(s)	11, 216, 846
Eco53kI	GAGCTC	2 cut(s)	9, 214
Eco57I	CTGAAG	1 cut(s)	321
Eco72I	CACGTG	1 cut(s)	707
EcoICRI	GAGCTC	2 cut(s)	9, 214
EcoT14I	CCWWGG	3 cut(s)	89, 491, 630
EcoT38I	GRGCYC	3 cut(s)	11, 216, 846
ErhI	CCWWGG	3 cut(s)	89, 491, 630
FaeI	CATG	1 cut(s)	773
FaiI	YATR	4 cut(s)	363, 755, 771, 794
FaqI	GGGAC	2 cut(s)	220, 638
FatI	CATG	1 cut(s)	769
Fnu4HI	GCNGC	3 cut(s)	63, 308, 789
FokI	GGATG	3 cut(s)	334, 686, 826
FriOI	GRGCYC	3 cut(s)	11, 216, 846
Fsp4HI	GCNGC	3 cut(s)	63, 308, 789
FspBI	CTAG	1 cut(s)	758
GlaI	GCGC	2 cut(s)	51, 53
GluI	GCNGC	3 cut(s)	63, 308, 789
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	6 cut(s)	66, 203, 248, 380, 408, 687
HhaI	GCGC	2 cut(s)	52, 54
Hin1II	CATG	1 cut(s)	773
Hin6I	GCGC	2 cut(s)	50, 52
HinP1I	GCGC	2 cut(s)	50, 52
HindIII	AAGCTT	2 cut(s)	256, 722
HinfI	GANTC	2 cut(s)	69, 537
HpaII	CCGG	6 cut(s)	66, 203, 248, 380, 408, 687
HphI	GGTGA	2 cut(s)	66, 515
Hpy188I	TCNGA	1 cut(s)	534
Hpy188III	TCNNGA	4 cut(s)	248, 392, 437, 692
Hpy99I	CGWCG	3 cut(s)	20, 23, 624
HpyAV	CCTTC	3 cut(s)	34, 511, 694
HpyCH4IV	ACGT	3 cut(s)	85, 619, 706
HpyCH4V	TGCA	5 cut(s)	159, 307, 317, 649, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 189, 730
HpyF3I	CTNAG	7 cut(s)	210, 215, 224, 533, 602, 737, 833
HpySE526I	ACGT	3 cut(s)	85, 619, 706
Hsp92II	CATG	1 cut(s)	773
HspAI	GCGC	2 cut(s)	50, 52
Kpn2I	TCCGGA	1 cut(s)	247
Kzo9I	GATC	4 cut(s)	505, 589, 772, 799
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	3 cut(s)	14, 279, 520
Lsp1109I	GCAGC	3 cut(s)	74, 319, 800
LweI	GCATC	3 cut(s)	532, 582, 742
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	3 cut(s)	85, 619, 706
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	507, 591, 774, 801
MbiI	CCGCTC	1 cut(s)	282
MboI	GATC	4 cut(s)	505, 589, 772, 799
MboII	GAAGA	3 cut(s)	423, 500, 851
MfeI	CAATTG	1 cut(s)	553
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	4 cut(s)	11, 216, 468, 846
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	8 cut(s)	109, 124, 149, 267, 345, 553, 636, 746
MluNI	TGGCCA	1 cut(s)	490
MlyI	GAGTC	1 cut(s)	531
MnlI	CCTC	7 cut(s)	22, 230, 233, 435, 603, 690, 804
Mox20I	TGGCCA	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	3 cut(s)	266, 566, 856
MslI	CAYNNNNRTG	1 cut(s)	484
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	6 cut(s)	66, 203, 248, 380, 408, 687
MspR9I	CCNGG	2 cut(s)	204, 380
MunI	CAATTG	1 cut(s)	553
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	49, 189, 730
NciI	CCSGG	2 cut(s)	204, 380
NdeII	GATC	4 cut(s)	505, 589, 772, 799
NlaIII	CATG	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	174
PauI	GCGCGC	1 cut(s)	50
PciSI	GCTCTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	64, 309, 790
PleI	GAGTC	1 cut(s)	531
PmaCI	CACGTG	1 cut(s)	707
PmlI	CACGTG	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	531
Ppu21I	YACGTR	1 cut(s)	707
Psp124BI	GAGCTC	2 cut(s)	11, 216
PspCI	CACGTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	589
PteI	GCGCGC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	484
SacI	GAGCTC	2 cut(s)	11, 216
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	266, 566, 856
SatI	GCNGC	3 cut(s)	63, 308, 789
Sau3AI	GATC	4 cut(s)	505, 589, 772, 799
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	204, 380
SduI	GDGCHC	4 cut(s)	11, 216, 468, 846
SfaNI	GCATC	3 cut(s)	532, 582, 742
SfcI	CTRYAG	1 cut(s)	792
SfuI	TTCGAA	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	484
SmlI	CTYRAG	2 cut(s)	728, 776
SmoI	CTYRAG	2 cut(s)	728, 776
SpeI	ACTAGT	1 cut(s)	757
Sse9I	AATT	8 cut(s)	109, 124, 149, 267, 345, 553, 636, 746
SsiI	CCGC	5 cut(s)	43, 200, 277, 282, 288
SspMI	CTAG	1 cut(s)	758
SstI	GAGCTC	2 cut(s)	11, 216
StyD4I	CCNGG	2 cut(s)	202, 378
StyI	CCWWGG	3 cut(s)	89, 491, 630
TaiI	ACGT	3 cut(s)	88, 622, 709
TaqI	TCGA	2 cut(s)	174, 468
TasI	AATT	8 cut(s)	109, 124, 149, 267, 345, 553, 636, 746
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	3 cut(s)	266, 566, 856
Tru9I	TTAA	3 cut(s)	266, 566, 856
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	62, 307, 788
TspDTI	ATGAA	3 cut(s)	486, 530, 690
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	113
XapI	RAATTY	3 cut(s)	109, 124, 149
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.