TruB family pseudouridylate synthase (N terminal domain)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14460 |
| fragaria_vesca | FvH4_6g51780 FvH4_6g51780 |
| malus_domestica | MD17G1022100.v1.1 |
| prunus_persica | Prupe.3G294000_v2.0.a1 |
| pyrus_communis | pycom17g01920 |
| rosa_chinensis | RchiOBHm_Chr2g0173311 |
| rosa_laevigata | RLG00000022178 |
| rosa_multiflora | Rmu_sc0010961.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00079060 |
| rosa_rugosa | Rorug02G0567200 Rorug02G0567300 |
| rosa_samantha | Rh2AG647600 Rh2BG658100 Rh2CG623500 Rh2DG671900 |
| rosa_wichuraiana | Rw2G053160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 170 |
| AccI | GTMKAC | 1 cut(s) | 1089 |
| AccII | CGCG | 1 cut(s) | 1185 |
| AclWI | GGATC | 1 cut(s) | 1028 |
| AcoI | YGGCCR | 1 cut(s) | 38 |
| AcsI | RAATTY | 2 cut(s) | 634, 1399 |
| AcuI | CTGAAG | 1 cut(s) | 140 |
| AcyI | GRCGYC | 2 cut(s) | 293, 335 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 427, 430, 1138, 1242 |
| AflIII | ACRYGT | 1 cut(s) | 519 |
| AgeI | ACCGGT | 1 cut(s) | 1171 |
| AgsI | TTSAA | 7 cut(s) | 478, 620, 664, 829, 1152, 1512, 1549 |
| AjiI | CACGTC | 1 cut(s) | 288 |
| AjnI | CCWGG | 3 cut(s) | 622, 993, 1190 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 1565 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 290, 322, 1018, 1050 |
| Alw21I | GWGCWC | 2 cut(s) | 456, 1338 |
| Alw26I | GTCTC | 3 cut(s) | 19, 27, 605 |
| AlwI | GGATC | 1 cut(s) | 1028 |
| Ama87I | CYCGRG | 1 cut(s) | 254 |
| AoxI | GGCC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 3 cut(s) | 484, 985, 1380 |
| ApoI | RAATTY | 2 cut(s) | 634, 1399 |
| AsiGI | ACCGGT | 1 cut(s) | 1171 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1507 |
| AspLEI | GCGC | 2 cut(s) | 1185, 1380 |
| AspS9I | GGNCC | 3 cut(s) | 108, 418, 917 |
| AsuC2I | CCSGG | 1 cut(s) | 1412 |
| AsuHPI | GGTGA | 8 cut(s) | 716, 778, 952, 1009, 1161, 1304, 1332, 1529 |
| AsuII | TTCGAA | 1 cut(s) | 1501 |
| AvaI | CYCGRG | 1 cut(s) | 254 |
| AvaII | GGWCC | 3 cut(s) | 108, 418, 917 |
| BaeGI | GKGCMC | 1 cut(s) | 1486 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1087, 1120 |
| BanII | GRGCYC | 3 cut(s) | 456, 1191, 1338 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 350, 377, 382, 409 |
| BbsI | GAAGAC | 2 cut(s) | 683, 1218 |
| Bbv12I | GWGCWC | 2 cut(s) | 456, 1338 |
| BbvI | GCAGC | 3 cut(s) | 471, 972, 1392 |
| BccI | CCATC | 5 cut(s) | 340, 553, 903, 951, 1286 |
| BceAI | ACGGC | 1 cut(s) | 106 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 506, 540 |
| BciT130I | CCWGG | 3 cut(s) | 624, 995, 1192 |
| BciVI | GTATCC | 2 cut(s) | 540, 1088 |
| BclI | TGATCA | 2 cut(s) | 199, 1107 |
| BcnI | CCSGG | 1 cut(s) | 1412 |
| BcoDI | GTCTC | 3 cut(s) | 19, 27, 605 |
| BfaI | CTAG | 1 cut(s) | 1344 |
| BfmI | CTRYAG | 1 cut(s) | 1527 |
| BfuI | GTATCC | 2 cut(s) | 540, 1088 |
| BglII | AGATCT | 1 cut(s) | 1248 |
| BisI | GCNGC | 4 cut(s) | 211, 485, 986, 1381 |
| BlsI | GCNGC | 4 cut(s) | 212, 486, 987, 1382 |
| BmcAI | AGTACT | 2 cut(s) | 368, 584 |
| Bme1390I | CCNGG | 4 cut(s) | 624, 995, 1192, 1412 |
| Bme18I | GGWCC | 3 cut(s) | 108, 418, 917 |
| BmeT110I | CYCGRG | 1 cut(s) | 254 |
| BmgBI | CACGTC | 1 cut(s) | 288 |
| BmgT120I | GGNCC | 3 cut(s) | 108, 418, 917 |
| BmiI | GGNNCC | 2 cut(s) | 110, 870 |
| BmrFI | CCNGG | 4 cut(s) | 624, 995, 1192, 1412 |
| BmsI | GCATC | 3 cut(s) | 838, 1150, 1241 |
| BoxI | GACNNNNGTC | 1 cut(s) | 597 |
| BpiI | GAAGAC | 2 cut(s) | 683, 1218 |
| BpmI | CTGGAG | 1 cut(s) | 593 |
| Bpu14I | TTCGAA | 1 cut(s) | 1501 |
| BpuEI | CTTGAG | 1 cut(s) | 440 |
| BpuMI | CCSGG | 1 cut(s) | 1412 |
| BsaBI | GATNNNNATC | 1 cut(s) | 204 |
| BsaHI | GRCGYC | 2 cut(s) | 293, 335 |
| BsaJI | CCNNGG | 5 cut(s) | 533, 623, 1099, 1190, 1191 |
| BsaWI | WCCGGW | 4 cut(s) | 235, 274, 638, 1171 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 127, 157, 491, 521, 566, 596 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 427, 430, 1138, 1242 |
| Bse118I | RCCGGY | 2 cut(s) | 423, 1171 |
| Bse1I | ACTGG | 5 cut(s) | 11, 320, 595, 1051, 1363 |
| Bse3DI | GCAATG | 1 cut(s) | 862 |
| Bse8I | GATNNNNATC | 1 cut(s) | 204 |
| BseBI | CCWGG | 3 cut(s) | 624, 995, 1192 |
| BseDI | CCNNGG | 5 cut(s) | 533, 623, 1099, 1190, 1191 |
| BseGI | GGATG | 4 cut(s) | 396, 962, 1165, 1232 |
| BseJI | GATNNNNATC | 1 cut(s) | 204 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 427, 430, 1138, 1242 |
| BseMI | GCAATG | 1 cut(s) | 862 |
| BseMII | CTCAG | 2 cut(s) | 200, 885 |
| BseNI | ACTGG | 5 cut(s) | 11, 320, 595, 1051, 1363 |
| BseSI | GKGCMC | 1 cut(s) | 1486 |
| BseXI | GCAGC | 3 cut(s) | 471, 972, 1392 |
| BsgI | GTGCAG | 1 cut(s) | 1473 |
| Bsh1236I | CGCG | 1 cut(s) | 1185 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1445 |
| BshFI | GGCC | 1 cut(s) | 40 |
| BshTI | ACCGGT | 1 cut(s) | 1171 |
| BsiEI | CGRYCG | 1 cut(s) | 1445 |
| BsiHKAI | GWGCWC | 2 cut(s) | 456, 1338 |
| BsiHKCI | CYCGRG | 1 cut(s) | 254 |
| BsiSI | CCGG | 8 cut(s) | 37, 236, 275, 424, 461, 639, 1172, 1411 |
| BslFI | GGGAC | 6 cut(s) | 94, 412, 821, 926, 1444, 1556 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 427, 430, 1138, 1242 |
| BsmAI | GTCTC | 3 cut(s) | 19, 27, 605 |
| BsmFI | GGGAC | 6 cut(s) | 94, 412, 821, 926, 1444, 1556 |
| BsnI | GGCC | 1 cut(s) | 40 |
| BsoBI | CYCGRG | 1 cut(s) | 254 |
| Bsp119I | TTCGAA | 1 cut(s) | 1501 |
| Bsp1286I | GDGCHC | 4 cut(s) | 456, 1191, 1338, 1486 |
| Bsp143I | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| Bsp19I | CCATGG | 1 cut(s) | 533 |
| BspANI | GGCC | 1 cut(s) | 40 |
| BspCNI | CTCAG | 2 cut(s) | 199, 886 |
| BspFNI | CGCG | 1 cut(s) | 1185 |
| BspLI | GGNNCC | 2 cut(s) | 110, 870 |
| BspMAI | CTGCAG | 1 cut(s) | 1531 |
| BspPI | GGATC | 1 cut(s) | 1028 |
| BspQI | GCTCTTC | 1 cut(s) | 1503 |
| BspT104I | TTCGAA | 1 cut(s) | 1501 |
| BsrDI | GCAATG | 1 cut(s) | 862 |
| BsrFI | RCCGGY | 2 cut(s) | 423, 1171 |
| BsrI | ACTGG | 5 cut(s) | 11, 320, 595, 1051, 1363 |
| BssAI | RCCGGY | 2 cut(s) | 423, 1171 |
| BssECI | CCNNGG | 5 cut(s) | 533, 623, 1099, 1190, 1191 |
| BssMI | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| BssNI | GRCGYC | 2 cut(s) | 293, 335 |
| BssT1I | CCWWGG | 2 cut(s) | 533, 1099 |
| Bst2UI | CCWGG | 3 cut(s) | 624, 995, 1192 |
| Bst4CI | ACNGT | 5 cut(s) | 91, 917, 931, 973, 1121 |
| Bst6I | CTCTTC | 6 cut(s) | 35, 380, 1312, 1498, 1503, 1554 |
| BstACI | GRCGYC | 2 cut(s) | 293, 335 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1535 |
| BstBI | TTCGAA | 1 cut(s) | 1501 |
| BstC8I | GCNNGC | 6 cut(s) | 333, 425, 732, 853, 1020, 1187 |
| BstDEI | CTNAG | 4 cut(s) | 186, 894, 1080, 1384 |
| BstDSI | CCRYGG | 1 cut(s) | 533 |
| BstF5I | GGATG | 4 cut(s) | 396, 962, 1165, 1232 |
| BstFNI | CGCG | 1 cut(s) | 1185 |
| BstHHI | GCGC | 2 cut(s) | 1185, 1380 |
| BstKTI | GATC | 7 cut(s) | 104, 171, 202, 1036, 1110, 1251, 1407 |
| BstMAI | GTCTC | 3 cut(s) | 19, 27, 605 |
| BstMBI | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| BstMCI | CGRYCG | 1 cut(s) | 1445 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1195, 1535 |
| BstNI | CCWGG | 3 cut(s) | 624, 995, 1192 |
| BstNSI | RCATGY | 1 cut(s) | 1022 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 597 |
| BstSCI | CCNGG | 4 cut(s) | 622, 993, 1190, 1410 |
| BstSFI | CTRYAG | 1 cut(s) | 1527 |
| BstSLI | GKGCMC | 1 cut(s) | 1486 |
| BstUI | CGCG | 1 cut(s) | 1185 |
| BstV1I | GCAGC | 3 cut(s) | 471, 972, 1392 |
| BstV2I | GAAGAC | 2 cut(s) | 683, 1218 |
| BstX2I | RGATCY | 1 cut(s) | 1248 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1084 |
| BstYI | RGATCY | 1 cut(s) | 1248 |
| BsuI | GTATCC | 2 cut(s) | 540, 1088 |
| BsuRI | GGCC | 1 cut(s) | 40 |
| BtgI | CCRYGG | 1 cut(s) | 533 |
| BtrI | CACGTC | 1 cut(s) | 288 |
| BtsCI | GGATG | 4 cut(s) | 396, 962, 1165, 1232 |
| BtsIMutI | CAGTG | 2 cut(s) | 602, 1126 |
| Cac8I | GCNNGC | 6 cut(s) | 333, 425, 732, 853, 1020, 1187 |
| CfoI | GCGC | 2 cut(s) | 1185, 1380 |
| Cfr10I | RCCGGY | 2 cut(s) | 423, 1171 |
| Cfr13I | GGNCC | 3 cut(s) | 108, 418, 917 |
| CseI | GACGC | 3 cut(s) | 282, 324, 977 |
| CspAI | ACCGGT | 1 cut(s) | 1171 |
| CviAII | CATG | 6 cut(s) | 105, 166, 534, 1019, 1267, 1539 |
| DdeI | CTNAG | 4 cut(s) | 186, 894, 1080, 1384 |
| DpnI | GATC | 7 cut(s) | 103, 170, 201, 1035, 1109, 1250, 1406 |
| DpnII | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 170 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 170 |
| EaeI | YGGCCR | 1 cut(s) | 38 |
| Eam1104I | CTCTTC | 6 cut(s) | 35, 380, 1312, 1498, 1503, 1554 |
| EarI | CTCTTC | 6 cut(s) | 35, 380, 1312, 1498, 1503, 1554 |
| EciI | GGCGGA | 2 cut(s) | 356, 749 |
| Ecl136II | GAGCTC | 2 cut(s) | 454, 1336 |
| Eco130I | CCWWGG | 2 cut(s) | 533, 1099 |
| Eco24I | GRGCYC | 3 cut(s) | 456, 1191, 1338 |
| Eco47I | GGWCC | 3 cut(s) | 108, 418, 917 |
| Eco53kI | GAGCTC | 2 cut(s) | 454, 1336 |
| Eco57I | CTGAAG | 1 cut(s) | 140 |
| Eco88I | CYCGRG | 1 cut(s) | 254 |
| EcoICRI | GAGCTC | 2 cut(s) | 454, 1336 |
| EcoRII | CCWGG | 3 cut(s) | 622, 993, 1190 |
| EcoT14I | CCWWGG | 2 cut(s) | 533, 1099 |
| EcoT22I | ATGCAT | 1 cut(s) | 1540 |
| EcoT38I | GRGCYC | 3 cut(s) | 456, 1191, 1338 |
| ErhI | CCWWGG | 2 cut(s) | 533, 1099 |
| FaeI | CATG | 6 cut(s) | 108, 169, 537, 1022, 1270, 1542 |
| FaqI | GGGAC | 6 cut(s) | 94, 412, 821, 926, 1444, 1556 |
| FatI | CATG | 6 cut(s) | 104, 165, 533, 1018, 1266, 1538 |
| FauI | CCCGC | 2 cut(s) | 226, 420 |
| FbaI | TGATCA | 2 cut(s) | 199, 1107 |
| FblI | GTMKAC | 1 cut(s) | 1089 |
| Fnu4HI | GCNGC | 4 cut(s) | 211, 485, 986, 1381 |
| FokI | GGATG | 4 cut(s) | 403, 969, 1172, 1219 |
| FriOI | GRGCYC | 3 cut(s) | 456, 1191, 1338 |
| Fsp4HI | GCNGC | 4 cut(s) | 211, 485, 986, 1381 |
| FspBI | CTAG | 1 cut(s) | 1344 |
| GlaI | GCGC | 2 cut(s) | 1184, 1379 |
| GluI | GCNGC | 4 cut(s) | 211, 485, 986, 1381 |
| GsuI | CTGGAG | 1 cut(s) | 593 |
| HaeIII | GGCC | 1 cut(s) | 40 |
| HapII | CCGG | 8 cut(s) | 37, 236, 275, 424, 461, 639, 1172, 1411 |
| HgaI | GACGC | 3 cut(s) | 282, 324, 977 |
| HhaI | GCGC | 2 cut(s) | 1185, 1380 |
| Hin1I | GRCGYC | 2 cut(s) | 293, 335 |
| Hin1II | CATG | 6 cut(s) | 108, 169, 537, 1022, 1270, 1542 |
| Hin6I | GCGC | 2 cut(s) | 1183, 1378 |
| HinP1I | GCGC | 2 cut(s) | 1183, 1378 |
| HincII | GTYRAC | 1 cut(s) | 175 |
| HindII | GTYRAC | 1 cut(s) | 175 |
| HinfI | GANTC | 7 cut(s) | 225, 239, 257, 404, 629, 1166, 1508 |
| HpaII | CCGG | 8 cut(s) | 37, 236, 275, 424, 461, 639, 1172, 1411 |
| HphI | GGTGA | 8 cut(s) | 716, 778, 952, 1009, 1161, 1304, 1332, 1529 |
| Hpy166II | GTNNAC | 4 cut(s) | 175, 565, 943, 1090 |
| Hpy188I | TCNGA | 6 cut(s) | 244, 262, 298, 409, 906, 1475 |
| Hpy188III | TCNNGA | 5 cut(s) | 310, 590, 602, 617, 1031 |
| Hpy8I | GTNNAC | 4 cut(s) | 175, 565, 943, 1090 |
| Hpy99I | CGWCG | 6 cut(s) | 127, 292, 298, 326, 340, 993 |
| HpyAV | CCTTC | 7 cut(s) | 535, 658, 664, 695, 745, 796, 1459 |
| HpyCH4III | ACNGT | 5 cut(s) | 91, 917, 931, 973, 1121 |
| HpyCH4IV | ACGT | 3 cut(s) | 287, 521, 1348 |
| HpyCH4V | TGCA | 6 cut(s) | 67, 487, 1232, 1454, 1529, 1538 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1195, 1535 |
| HpyF3I | CTNAG | 4 cut(s) | 186, 894, 1080, 1384 |
| HpySE526I | ACGT | 3 cut(s) | 287, 521, 1348 |
| Hsp92I | GRCGYC | 2 cut(s) | 293, 335 |
| Hsp92II | CATG | 6 cut(s) | 108, 169, 537, 1022, 1270, 1542 |
| HspAI | GCGC | 2 cut(s) | 1183, 1378 |
| KroI | GCCGGC | 1 cut(s) | 423 |
| KroNI | GCCGGC | 1 cut(s) | 425 |
| Ksp22I | TGATCA | 2 cut(s) | 199, 1107 |
| Kzo9I | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| LguI | GCTCTTC | 1 cut(s) | 1503 |
| LmnI | GCTCC | 4 cut(s) | 451, 868, 1195, 1427 |
| Lsp1109I | GCAGC | 3 cut(s) | 471, 972, 1392 |
| LweI | GCATC | 3 cut(s) | 838, 1150, 1241 |
| MaeI | CTAG | 1 cut(s) | 1344 |
| MaeII | ACGT | 3 cut(s) | 287, 521, 1348 |
| MaeIII | GTNAC | 1 cut(s) | 790 |
| MalI | GATC | 7 cut(s) | 103, 170, 201, 1035, 1109, 1250, 1406 |
| MboI | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| MflI | RGATCY | 1 cut(s) | 1248 |
| MhlI | GDGCHC | 4 cut(s) | 456, 1191, 1338, 1486 |
| MluCI | AATT | 7 cut(s) | 299, 503, 634, 761, 1056, 1399, 1566 |
| MlyI | GAGTC | 4 cut(s) | 233, 234, 266, 638 |
| MmeI | TCCRAC | 2 cut(s) | 276, 1267 |
| Mph1103I | ATGCAT | 1 cut(s) | 1540 |
| MreI | CGCCGGCG | 1 cut(s) | 423 |
| MroNI | GCCGGC | 1 cut(s) | 423 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1507 |
| MseI | TTAA | 3 cut(s) | 819, 1055, 1490 |
| MspA1I | CMGCKG | 1 cut(s) | 571 |
| MspI | CCGG | 8 cut(s) | 37, 236, 275, 424, 461, 639, 1172, 1411 |
| MspR9I | CCNGG | 4 cut(s) | 624, 995, 1192, 1412 |
| MvaI | CCWGG | 3 cut(s) | 624, 995, 1192 |
| MvnI | CGCG | 1 cut(s) | 1185 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1195, 1535 |
| NaeI | GCCGGC | 1 cut(s) | 425 |
| NciI | CCSGG | 1 cut(s) | 1412 |
| NcoI | CCATGG | 1 cut(s) | 533 |
| NdeII | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| NgoMIV | GCCGGC | 1 cut(s) | 423 |
| NlaIII | CATG | 6 cut(s) | 108, 169, 537, 1022, 1270, 1542 |
| NlaIV | GGNNCC | 2 cut(s) | 110, 870 |
| NmuCI | GTSAC | 1 cut(s) | 790 |
| NsiI | ATGCAT | 1 cut(s) | 1540 |
| NspI | RCATGY | 1 cut(s) | 1022 |
| NspV | TTCGAA | 1 cut(s) | 1501 |
| PaeI | GCATGC | 1 cut(s) | 1022 |
| PaeR7I | CTCGAG | 1 cut(s) | 254 |
| PasI | CCCWGGG | 1 cut(s) | 1191 |
| PciSI | GCTCTTC | 1 cut(s) | 1503 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 168 |
| PdiI | GCCGGC | 1 cut(s) | 425 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1507 |
| PfeI | GAWTC | 3 cut(s) | 404, 1166, 1508 |
| PinAI | ACCGGT | 1 cut(s) | 1171 |
| PkrI | GCNGC | 4 cut(s) | 212, 486, 987, 1382 |
| PleI | GAGTC | 4 cut(s) | 233, 233, 265, 637 |
| PpsI | GAGTC | 4 cut(s) | 233, 233, 265, 637 |
| PshAI | GACNNNNGTC | 1 cut(s) | 597 |
| Psp124BI | GAGCTC | 2 cut(s) | 456, 1338 |
| Psp6I | CCWGG | 3 cut(s) | 622, 993, 1190 |
| PspGI | CCWGG | 3 cut(s) | 622, 993, 1190 |
| PspN4I | GGNNCC | 2 cut(s) | 110, 870 |
| PspPI | GGNCC | 3 cut(s) | 108, 418, 917 |
| PspXI | VCTCGAGB | 1 cut(s) | 254 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 255, 287 |
| PstI | CTGCAG | 1 cut(s) | 1531 |
| PsuI | RGATCY | 1 cut(s) | 1248 |
| PvuII | CAGCTG | 1 cut(s) | 571 |
| SacI | GAGCTC | 2 cut(s) | 456, 1338 |
| SapI | GCTCTTC | 1 cut(s) | 1503 |
| SaqAI | TTAA | 3 cut(s) | 819, 1055, 1490 |
| SatI | GCNGC | 4 cut(s) | 211, 485, 986, 1381 |
| Sau3AI | GATC | 7 cut(s) | 101, 168, 199, 1033, 1107, 1248, 1404 |
| Sau96I | GGNCC | 3 cut(s) | 108, 418, 917 |
| ScaI | AGTACT | 2 cut(s) | 368, 584 |
| SchI | GAGTC | 4 cut(s) | 233, 234, 266, 638 |
| ScrFI | CCNGG | 4 cut(s) | 624, 995, 1192, 1412 |
| SduI | GDGCHC | 4 cut(s) | 456, 1191, 1338, 1486 |
| SfaNI | GCATC | 3 cut(s) | 838, 1150, 1241 |
| SfcI | CTRYAG | 1 cut(s) | 1527 |
| Sfr274I | CTCGAG | 1 cut(s) | 254 |
| SfuI | TTCGAA | 1 cut(s) | 1501 |
| SgrAI | CRCCGGYG | 1 cut(s) | 423 |
| SinI | GGWCC | 3 cut(s) | 108, 418, 917 |
| SlaI | CTCGAG | 1 cut(s) | 254 |
| SmlI | CTYRAG | 2 cut(s) | 254, 455 |
| SmoI | CTYRAG | 2 cut(s) | 254, 455 |
| SphI | GCATGC | 1 cut(s) | 1022 |
| Sse9I | AATT | 7 cut(s) | 299, 503, 634, 761, 1056, 1399, 1566 |
| SspMI | CTAG | 1 cut(s) | 1344 |
| SstI | GAGCTC | 2 cut(s) | 456, 1338 |
| StyD4I | CCNGG | 4 cut(s) | 622, 993, 1190, 1410 |
| StyI | CCWWGG | 2 cut(s) | 533, 1099 |
| TaaI | ACNGT | 5 cut(s) | 91, 917, 931, 973, 1121 |
| TaiI | ACGT | 3 cut(s) | 290, 524, 1351 |
| TaqI | TCGA | 6 cut(s) | 255, 309, 321, 356, 603, 1501 |
| TaqII | GACCGA | 1 cut(s) | 1431 |
| TasI | AATT | 7 cut(s) | 299, 503, 634, 761, 1056, 1399, 1566 |
| TatI | WGTACW | 4 cut(s) | 91, 366, 507, 582 |
| TauI | GCSGC | 1 cut(s) | 213 |
| TfiI | GAWTC | 3 cut(s) | 404, 1166, 1508 |
| Tru1I | TTAA | 3 cut(s) | 819, 1055, 1490 |
| Tru9I | TTAA | 3 cut(s) | 819, 1055, 1490 |
| TscAI | CASTG | 2 cut(s) | 602, 1126 |
| TseFI | GTSAC | 1 cut(s) | 790 |
| TseI | GCWGC | 3 cut(s) | 484, 985, 1380 |
| Tsp45I | GTSAC | 1 cut(s) | 790 |
| TspDTI | ATGAA | 2 cut(s) | 858, 1224 |
| TspGWI | ACGGA | 4 cut(s) | 74, 416, 1107, 1121 |
| TspRI | CASTG | 2 cut(s) | 602, 1126 |
| VpaK11BI | GGWCC | 3 cut(s) | 108, 418, 917 |
| XapI | RAATTY | 2 cut(s) | 634, 1399 |
| XceI | RCATGY | 1 cut(s) | 1022 |
| XhoI | CTCGAG | 1 cut(s) | 254 |
| XmiI | GTMKAC | 1 cut(s) | 1089 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1507 |
| XspI | CTAG | 1 cut(s) | 1344 |
| ZrmI | AGTACT | 2 cut(s) | 368, 584 |
| Zsp2I | ATGCAT | 1 cut(s) | 1540 |