pycom17g02210

Glycosylphosphatidylinositol anchor attachment 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
1392367 .. 1394217
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1194 bp
ATGGCGGAGAGTGGGAACGAGACCGCCGCCGGAGCTAAACCTAAACGAAAACCAATCGTATGGCTGGGGATCTTCCTCATCTCCCACAGCTTCTTCTTCAGTGTCGTTCTCTCCGCCGCCGGGGTGGTGGCTCTCTTGCTGCTTCCGGTTCTCGCCAAGAACACTTACATTTCCGAGAATGCCCTCATGCCTGGCTCCGCGGCGTCTATGCTTTCAGATCAGGAGGTTGCAGAGGCGAGCAGATTGGTTAGTGATTTGACCTCTTCGAATTCGAAGCCTCTCTGTTCAGCAATAGGAAGTCAAAGAATCCTAGCACAGCATATGTCAAACTTGGGTGCCGAAGTTAGTTTTCACAAGTTCCACTCTCAGAGAAATCAATTTCACTCACTCCACTTCTTTTCTAGCCCTGATTCTGGAAGAGTTGAGCAGAACGTCAGTGGTTCGATGCACGGTGTCAACACTGTTGGAATTATAAGAGCACCTCGTGGTGACGGGAAGGAAGCTATTGTCTTGGTTACACCTTTCAATTCAGCGAAAGTGAGCCCGAATGAGGCCTTTTCTTTGGGCATTTCATACTCAGTATTTTCCTTGCTCAACAGAGTTCCTTGGTTGGCCAAGGATGTTATATGGCTTGTTGCTGATTCCCAATTTGGAGAGTATGCTGCAGTTTCTGCTTGGCTAAGAGACTATCACACACCTGTATTTAGCGGACTGGGCACGCTAGATGCAGAAATGTGTACCGAAAACAATAATCTTTATGGAATGAATGAGAACCCGTCAACAGGAAGGGCGATTTATGATGGATTTAAACGTGCTGGAACCATGGCTGCAGCTCTTGTCATCAAGGTTGCAGATCAAAGTGAACAATTTGAGGATGGTCTAAGCATCTATGCTGAGGCATCCAATGGGCAAATGCCAAATCTTGACCTCATCAATGTTGTGAATTACTTAGCAGTACATAGGCAAGGTTTGCGGGTAAAGGTGGAGAAATTTTGGTCTATACTTGGCGTGAAGTGGCTCAATACTTTGGGTGAAATATTTGAATCACTCGGACATTTTGCTAGAAGCTTGAATCCCGATTGGAAATTTGGTATCCCAGCTACTGATTATATCGAGGGCAGTGCTACACTCGCAAGTTCATTGTACAATCAGGCTTTGGGTGTCCCCACTGGCCCCCCATGGTGCCTTTCGTGA

Protein Analysis

398

Amino Acids

42.97

Weight (kDa)

6.07

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gaa1 PF04114 150 - 392 2.4e-36 Gaa1-like, GPI transamidase component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 473
AccB1I GGYRCC 2 cut(s) 335, 1182
AccII CGCG 1 cut(s) 200
AciI CCGC 9 cut(s) 5, 24, 27, 114, 117, 198, 200, 708, 973
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 3 cut(s) 268, 989, 1085
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 203
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 3 cut(s) 739, 957, 1145
AfiI CCNNNNNNNGG 4 cut(s) 120, 413, 550, 782
AgsI TTSAA 3 cut(s) 526, 1043, 1072
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 6 cut(s) 35, 90, 503, 833, 1068, 1100
AluI AGCT 6 cut(s) 35, 90, 503, 833, 1068, 1100
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 2 cut(s) 14, 678
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 2 cut(s) 671, 1103
AoxI GGCC 3 cut(s) 552, 612, 1171
ApeKI GCWGC 4 cut(s) 139, 662, 827, 830
ApoI RAATTY 3 cut(s) 268, 989, 1085
AspS9I GGNCC 1 cut(s) 1172
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 500, 1043
AsuII TTCGAA 2 cut(s) 266, 272
BaeGI GKGCMC 1 cut(s) 719
BalI TGGCCA 1 cut(s) 614
BanI GGYRCC 2 cut(s) 335, 1182
BanII GRGCYC 1 cut(s) 545
BauI CACGAG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 481
BbvCI CCTCAGC 1 cut(s) 894
BbvI GCAGC 4 cut(s) 126, 649, 814, 842
BccI CCATC 2 cut(s) 794, 869
BcgI CGANNNNNNTGC 2 cut(s) 1103, 1137
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 1 cut(s) 1103
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 14, 678
BfaI CTAG 4 cut(s) 311, 402, 722, 1062
BfmI CTRYAG 2 cut(s) 663, 828
BfuI GTATCC 1 cut(s) 1103
BisI GCNGC 7 cut(s) 27, 117, 140, 201, 663, 828, 831
BlsI GCNGC 7 cut(s) 28, 118, 141, 202, 664, 829, 832
Bme1390I CCNGG 2 cut(s) 121, 192
BmgT120I GGNCC 1 cut(s) 1172
BmiI GGNNCC 5 cut(s) 196, 337, 820, 1174, 1184
BmrFI CCNGG 2 cut(s) 121, 192
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 4 cut(s) 435, 715, 894, 908
BmuI ACTGGG 1 cut(s) 722
Bpu10I CCTNAGC 1 cut(s) 894
Bpu14I TTCGAA 2 cut(s) 266, 272
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 6 cut(s) 120, 198, 605, 615, 822, 1178
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 413, 550, 782
Bse1I ACTGG 2 cut(s) 717, 1174
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 6 cut(s) 120, 198, 605, 615, 822, 1178
BseGI GGATG 3 cut(s) 625, 880, 899
BseLI CCNNNNNNNGG 4 cut(s) 120, 413, 550, 782
BseMII CTCAG 3 cut(s) 380, 591, 885
BseNI ACTGG 2 cut(s) 717, 1174
BseSI GKGCMC 1 cut(s) 719
BseXI GCAGC 4 cut(s) 126, 649, 814, 842
BseYI CCCAGC 2 cut(s) 64, 1096
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 3 cut(s) 554, 614, 1173
BshNI GGYRCC 2 cut(s) 335, 1182
BsiHKAI GWGCWC 1 cut(s) 481
BsiSI CCGG 3 cut(s) 30, 120, 146
BslFI GGGAC 1 cut(s) 1148
BslI CCNNNNNNNGG 4 cut(s) 120, 413, 550, 782
BsmAI GTCTC 2 cut(s) 14, 678
BsmFI GGGAC 1 cut(s) 1148
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 3 cut(s) 554, 614, 1173
Bso31I GGTCTC 1 cut(s) 14
Bsp119I TTCGAA 2 cut(s) 266, 272
Bsp1286I GDGCHC 3 cut(s) 481, 545, 719
Bsp1407I TGTACA 1 cut(s) 1143
Bsp143I GATC 3 cut(s) 69, 217, 853
Bsp19I CCATGG 2 cut(s) 822, 1178
BspACI CCGC 9 cut(s) 5, 24, 27, 114, 117, 198, 200, 708, 973
BspANI GGCC 3 cut(s) 554, 614, 1173
BspCNI CTCAG 3 cut(s) 379, 590, 886
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 5 cut(s) 196, 337, 820, 1174, 1184
BspMAI CTGCAG 2 cut(s) 667, 832
BspPI GGATC 1 cut(s) 77
BspT104I TTCGAA 2 cut(s) 266, 272
BspT107I GGYRCC 2 cut(s) 335, 1182
BspTNI GGTCTC 1 cut(s) 14
BsrGI TGTACA 1 cut(s) 1143
BsrI ACTGG 2 cut(s) 717, 1174
BssECI CCNNGG 6 cut(s) 120, 198, 605, 615, 822, 1178
BssMI GATC 3 cut(s) 69, 217, 853
BssNI GRCGYC 1 cut(s) 203
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 4 cut(s) 605, 615, 822, 1178
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 452, 463
Bst6I CTCTTC 2 cut(s) 268, 412
BstACI GRCGYC 1 cut(s) 203
BstAPI GCANNNNNTGC 2 cut(s) 671, 970
BstAUI TGTACA 1 cut(s) 1143
BstBI TTCGAA 2 cut(s) 266, 272
BstC8I GCNNGC 2 cut(s) 238, 719
BstDEI CTNAG 6 cut(s) 366, 577, 680, 881, 894, 949
BstDSI CCRYGG 3 cut(s) 198, 822, 1178
BstF5I GGATG 3 cut(s) 625, 880, 899
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 3 cut(s) 72, 220, 856
BstMAI GTCTC 2 cut(s) 14, 678
BstMBI GATC 3 cut(s) 69, 217, 853
BstMWI GCNNNNNNNGC 5 cut(s) 32, 671, 714, 970, 1130
BstNI CCWGG 1 cut(s) 192
BstSCI CCNGG 2 cut(s) 119, 190
BstSFI CTRYAG 2 cut(s) 663, 828
BstSLI GKGCMC 1 cut(s) 719
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 4 cut(s) 126, 649, 814, 842
BstX2I RGATCY 1 cut(s) 69
BstXI CCANNNNNNTGG 1 cut(s) 60
BstYI RGATCY 1 cut(s) 69
BsuI GTATCC 1 cut(s) 1103
BsuRI GGCC 3 cut(s) 554, 614, 1173
BtgI CCRYGG 3 cut(s) 198, 822, 1178
BtsCI GGATG 3 cut(s) 625, 880, 899
BtsI GCAGTG 1 cut(s) 1126
BtsIMutI CAGTG 5 cut(s) 106, 442, 459, 1126, 1167
Cac8I GCNNGC 2 cut(s) 238, 719
CaiI CAGNNNCTG 2 cut(s) 671, 1103
Cfr13I GGNCC 1 cut(s) 1172
Cfr42I CCGCGG 1 cut(s) 201
CseI GACGC 1 cut(s) 192
Csp6I GTAC 3 cut(s) 738, 956, 1144
CviAII CATG 3 cut(s) 187, 823, 1179
CviQI GTAC 3 cut(s) 738, 956, 1144
DdeI CTNAG 6 cut(s) 366, 577, 680, 881, 894, 949
DpnI GATC 3 cut(s) 71, 219, 855
DpnII GATC 3 cut(s) 69, 217, 853
DraI TTTAAA 1 cut(s) 808
DraIII CACNNNGTG 1 cut(s) 485
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 268, 412
EarI CTCTTC 2 cut(s) 268, 412
EciI GGCGGA 2 cut(s) 20, 103
Eco130I CCWWGG 4 cut(s) 605, 615, 822, 1178
Eco147I AGGCCT 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 545
Eco31I GGTCTC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 82
EcoRI GAATTC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 190
EcoT14I CCWWGG 4 cut(s) 605, 615, 822, 1178
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 4 cut(s) 605, 615, 822, 1178
FaeI CATG 3 cut(s) 190, 826, 1182
FaqI GGGAC 1 cut(s) 1148
FatI CATG 3 cut(s) 186, 822, 1178
FauI CCCGC 1 cut(s) 966
FauNDI CATATG 1 cut(s) 321
Fnu4HI GCNGC 7 cut(s) 27, 117, 140, 201, 663, 828, 831
FokI GGATG 3 cut(s) 632, 886, 887
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 7 cut(s) 27, 117, 140, 201, 663, 828, 831
FspBI CTAG 4 cut(s) 311, 402, 722, 1062
GluI GCNGC 7 cut(s) 27, 117, 140, 201, 663, 828, 831
GsaI CCCAGC 2 cut(s) 68, 1100
HaeIII GGCC 3 cut(s) 554, 614, 1173
HapII CCGG 3 cut(s) 30, 120, 146
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 3 cut(s) 190, 826, 1182
HincII GTYRAC 2 cut(s) 457, 780
HindII GTYRAC 2 cut(s) 457, 780
HindIII AAGCTT 1 cut(s) 1066
HinfI GANTC 5 cut(s) 306, 410, 641, 1043, 1072
HpaII CCGG 3 cut(s) 30, 120, 146
HphI GGTGA 2 cut(s) 500, 1043
Hpy166II GTNNAC 4 cut(s) 457, 738, 780, 863
Hpy188I TCNGA 4 cut(s) 175, 217, 369, 1052
Hpy188III TCNNGA 5 cut(s) 221, 414, 923, 1076, 1191
Hpy8I GTNNAC 4 cut(s) 457, 738, 780, 863
HpyAV CCTTC 2 cut(s) 490, 780
HpyCH4III ACNGT 2 cut(s) 452, 463
HpyCH4IV ACGT 2 cut(s) 432, 811
HpyCH4V TGCA 6 cut(s) 230, 448, 665, 728, 830, 851
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 671, 714, 970, 1130
HpyF3I CTNAG 6 cut(s) 366, 577, 680, 881, 894, 949
HpySE526I ACGT 2 cut(s) 432, 811
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 3 cut(s) 190, 826, 1182
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 3 cut(s) 69, 217, 853
LmnI GCTCC 2 cut(s) 32, 200
Lsp1109I GCAGC 4 cut(s) 126, 649, 814, 842
LweI GCATC 4 cut(s) 435, 715, 894, 908
MaeI CTAG 4 cut(s) 311, 402, 722, 1062
MaeII ACGT 2 cut(s) 432, 811
MaeIII GTNAC 2 cut(s) 488, 514
MalI GATC 3 cut(s) 71, 219, 855
MboI GATC 3 cut(s) 69, 217, 853
MboII GAAGA 5 cut(s) 64, 85, 88, 255, 429
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 3 cut(s) 481, 545, 719
MlsI TGGCCA 1 cut(s) 614
MluCI AATT 9 cut(s) 268, 377, 468, 526, 647, 866, 943, 989, 1085
MluNI TGGCCA 1 cut(s) 614
MmeI TCCRAC 1 cut(s) 445
Mox20I TGGCCA 1 cut(s) 614
MscI TGGCCA 1 cut(s) 614
MseI TTAA 1 cut(s) 807
Msp20I TGGCCA 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 3 cut(s) 30, 120, 146
MspR9I CCNGG 2 cut(s) 121, 192
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 192
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 32, 671, 714, 970, 1130
NciI CCSGG 1 cut(s) 121
NcoI CCATGG 2 cut(s) 822, 1178
NdeI CATATG 1 cut(s) 321
NdeII GATC 3 cut(s) 69, 217, 853
NlaIII CATG 3 cut(s) 190, 826, 1182
NlaIV GGNNCC 5 cut(s) 196, 337, 820, 1174, 1184
NmuCI GTSAC 1 cut(s) 488
NspV TTCGAA 2 cut(s) 266, 272
PceI AGGCCT 1 cut(s) 554
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 5 cut(s) 306, 410, 641, 1043, 1072
PkrI GCNGC 7 cut(s) 28, 118, 141, 202, 664, 829, 832
PsiI TTATAA 1 cut(s) 473
Psp6I CCWGG 1 cut(s) 190
PspFI CCCAGC 2 cut(s) 64, 1096
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 5 cut(s) 196, 337, 820, 1174, 1184
PspPI GGNCC 1 cut(s) 1172
PstI CTGCAG 2 cut(s) 667, 832
PstNI CAGNNNCTG 2 cut(s) 671, 1103
PsuI RGATCY 1 cut(s) 69
RsaI GTAC 3 cut(s) 739, 957, 1145
RsaNI GTAC 3 cut(s) 738, 956, 1144
SacII CCGCGG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 807
SatI GCNGC 7 cut(s) 27, 117, 140, 201, 663, 828, 831
Sau3AI GATC 3 cut(s) 69, 217, 853
Sau96I GGNCC 1 cut(s) 1172
ScrFI CCNGG 2 cut(s) 121, 192
SduI GDGCHC 3 cut(s) 481, 545, 719
SfaNI GCATC 4 cut(s) 435, 715, 894, 908
SfcI CTRYAG 2 cut(s) 663, 828
Sfr303I CCGCGG 1 cut(s) 201
SfuI TTCGAA 2 cut(s) 266, 272
SgrBI CCGCGG 1 cut(s) 201
Sse9I AATT 9 cut(s) 268, 377, 468, 526, 647, 866, 943, 989, 1085
SseBI AGGCCT 1 cut(s) 554
SsiI CCGC 9 cut(s) 5, 24, 27, 114, 117, 198, 200, 708, 973
SspI AATATT 1 cut(s) 1038
SspMI CTAG 4 cut(s) 311, 402, 722, 1062
StuI AGGCCT 1 cut(s) 554
StyD4I CCNGG 2 cut(s) 119, 190
StyI CCWWGG 4 cut(s) 605, 615, 822, 1178
TaaI ACNGT 2 cut(s) 452, 463
TaiI ACGT 2 cut(s) 435, 814
TaqI TCGA 4 cut(s) 266, 272, 443, 1113
TasI AATT 9 cut(s) 268, 377, 468, 526, 647, 866, 943, 989, 1085
TatI WGTACW 2 cut(s) 955, 1143
TauI GCSGC 3 cut(s) 29, 119, 203
TfiI GAWTC 5 cut(s) 306, 410, 641, 1043, 1072
Tru1I TTAA 1 cut(s) 807
Tru9I TTAA 1 cut(s) 807
TscAI CASTG 5 cut(s) 106, 442, 466, 1126, 1174
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 4 cut(s) 139, 662, 827, 830
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 561, 779, 1128
TspRI CASTG 5 cut(s) 106, 442, 466, 1126, 1174
XapI RAATTY 3 cut(s) 268, 989, 1085
XspI CTAG 4 cut(s) 311, 402, 722, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.