Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008153

Physical Location & Seq

Genomic Coordinates Reverse (-)

1868878 .. 1871982

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g02820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAACTAGATTTTAATTCTGATCCTGAGGATATTTGTATTAATGGCTACAAAGAACTTGGCAATTTGAAACGTCATGTTCAGCATGTTGCTAACCTGTATCGGCACTCTCTCCGTGCATATGCATCAGTCCTGTATAGGCAGCTACCACAGAACTTTCGGATAATTTTGCGTGGACAAGATGTTGAGCGCCGTAATGTTGCCTTGTATCTCAATTTTGTTGAGTTAATCAAATATAGGCCGAAAACTGAAGGAACTATCAAGTATAGGCCGACAACTGATGGAAATCTGGAGCTTGAATATATTACCGCAATAGGTTTTTGGAAGGAAGCTGCACGTGCTAATATTCATGGTTTCAATATCTACCATCGGAATCGTCTGATACTGCCATTTTGGCGTGTACTTAAACAAATGACAGGCAGTACCGGGAGAGGAGTTGTCGGTGTCCTGGAACCAAATTTTATTCAGCCTACTCACAATAAGCAAGATTTTGAAAAAACTTCCCTCTTCCACAAGCTTGAAGATCGTTTAAAGCAAATGACGGTGGAGTACTGGAAGAAATATTCCAAAGTCGCCGGTTATCAGACTGTGAAAAAAGTTCGTTCTAAGAGACTGCGTCGTCCAAAATCACCTTCTTCAAGAACTAGAAATTCTTTGCACCTAGCTTTGTTACTGAATCACGGTTCTCATGAAGCATCTACTGGTGCAGCGGGATCCTTAGAAGATCCCCAAGTCGCCGTATCAGATGCTTCATCCAGTGGACTGCAAATAACAGCAGATATCTCCTCAGAAGGAAACGTCAAAAAGAGGAAGGATCTTGATACGCCATTGGAACCACAACTTGCGAAAAGGCACATGGGACATGACGGAACTGATGTCCAGTACATTACTCAACAGTCTGAGAATAGCATCGAGAACACGAAGCAAATTTCACAGAAGATAATTTTGATTCGAGAAAACAGAAGGCTTCGGTCAGAGATGCTCGCGGCGGAAAAACGGATTGAAGAACTTAACTTGAAGATGCAACAACGTATGCGTGAACTCAAGGATGAGCAGCGACGCGGAGGTGAACTGGAGAATGAACTGACTCAGTTTTTGATTCAATCATACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c_3

Protein Analysis

372

Amino Acids

42.98

Weight (kDa)

9.71

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g51110 FvH4_6g51110
malus_domestica	MD17G1030900.v1.1
prunus_persica	Prupe.3G289000_v2.0.a1 Prupe.3G289000_v2.0.a1 Prupe.3G289000_v2.0.a1 Prupe.3G289000_v2.0.a1 Prupe.3G289000_v2.0.a1
pyrus_communis	pycom17g02820
rosa_chinensis	RchiOBHm_Chr2g0172741
rosa_laevigata	RLG00000022065 RLG00000022129
rosa_multiflora	Rmu_sc0008434.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079600 Rroxscaffold_2G00080190 Rroxscaffold_2G00080400
rosa_rugosa	Rorug02G0561000
rosa_samantha	Rh2AG638200 Rh2BG651800 Rh2CG610400 Rh2CG618200 Rh2DG658300 Rh2DG665900
rosa_wichuraiana	Rw2G052730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	618
AccII	CGCG	2 cut(s)	986, 1062
AciI	CCGC	5 cut(s)	309, 710, 986, 989, 1062
AclWI	GGATC	5 cut(s)	17, 708, 719, 721, 822
AcsI	RAATTY	3 cut(s)	457, 649, 927
AcuI	CTGAAG	1 cut(s)	270
AcvI	CACGTG	1 cut(s)	338
AfaI	GTAC	4 cut(s)	402, 424, 551, 884
AgsI	TTSAA	9 cut(s)	70, 299, 358, 494, 521, 639, 1004, 1018, 1103
AjnI	CCWGG	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	616, 648
AluBI	AGCT	5 cut(s)	145, 295, 332, 517, 665
AluI	AGCT	5 cut(s)	145, 295, 332, 517, 665
Alw26I	GTCTC	1 cut(s)	604
AlwI	GGATC	5 cut(s)	17, 708, 719, 721, 822
AoxI	GGCC	2 cut(s)	239, 269
ApeKI	GCWGC	4 cut(s)	142, 332, 707, 1054
ApoI	RAATTY	3 cut(s)	457, 649, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	1078, 1110
AseI	ATTAAT	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	621, 1079
AxyI	CCTNAGG	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	713
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	154, 319, 719, 1066
BccI	CCATC	2 cut(s)	275, 375
BceAI	ACGGC	2 cut(s)	177, 722
BciT130I	CCWGG	1 cut(s)	449
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	604
BfaI	CTAG	3 cut(s)	8, 645, 662
BfoI	RGCGCY	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	5 cut(s)	143, 333, 708, 987, 1055
BlsI	GCNGC	5 cut(s)	144, 334, 709, 988, 1056
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	427, 449
BmiI	GGNNCC	3 cut(s)	453, 715, 834
BmrFI	CCNGG	2 cut(s)	427, 449
BmsI	GCATC	6 cut(s)	134, 704, 736, 918, 969, 1011
BpmI	CTGGAG	2 cut(s)	311, 1094
BpuEI	CTTGAG	1 cut(s)	1028
BpuMI	CCSGG	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	5 cut(s)	557, 706, 756, 880, 1077
Bse21I	CCTNAGG	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	752, 1054
BseJI	GATNNNNATC	1 cut(s)	285
BseMII	CTCAG	4 cut(s)	18, 801, 891, 1103
BseNI	ACTGG	5 cut(s)	557, 706, 756, 880, 1077
BseRI	GAGGAG	2 cut(s)	447, 775
BseXI	GCAGC	4 cut(s)	154, 319, 719, 1066
BsgI	GTGCAG	2 cut(s)	318, 726
Bsh1236I	CGCG	2 cut(s)	986, 1062
BshFI	GGCC	2 cut(s)	241, 271
BsiSI	CCGG	2 cut(s)	426, 576
BslFI	GGGAC	1 cut(s)	873
BsmAI	GTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	2 cut(s)	241, 271
Bsp143I	GATC	5 cut(s)	22, 523, 713, 724, 814
BspACI	CCGC	5 cut(s)	309, 710, 986, 989, 1062
BspANI	GGCC	2 cut(s)	241, 271
BspCNI	CTCAG	4 cut(s)	19, 800, 892, 1102
BspFNI	CGCG	2 cut(s)	986, 1062
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	453, 715, 834
BspPI	GGATC	5 cut(s)	17, 708, 719, 721, 822
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	5 cut(s)	557, 706, 756, 880, 1077
BssAI	RCCGGY	1 cut(s)	575
BssMI	GATC	5 cut(s)	22, 523, 713, 724, 814
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	4 cut(s)	544, 589, 683, 897
Bst6I	CTCTTC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	984
BstDEI	CTNAG	6 cut(s)	27, 606, 718, 787, 900, 1089
BstF5I	GGATG	2 cut(s)	752, 1054
BstFNI	CGCG	2 cut(s)	986, 1062
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	5 cut(s)	25, 526, 716, 727, 817
BstMAI	GTCTC	1 cut(s)	604
BstMBI	GATC	5 cut(s)	22, 523, 713, 724, 814
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 394
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	425, 447
BstUI	CGCG	2 cut(s)	986, 1062
BstV1I	GCAGC	4 cut(s)	154, 319, 719, 1066
BstX2I	RGATCY	3 cut(s)	713, 724, 814
BstYI	RGATCY	3 cut(s)	713, 724, 814
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	241, 271
BtsCI	GGATG	2 cut(s)	752, 1054
BtsIMutI	CAGTG	1 cut(s)	763
Cac8I	GCNNGC	1 cut(s)	984
CciI	TCATGA	1 cut(s)	688
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	575
CseI	GACGC	2 cut(s)	605, 1068
Csp6I	GTAC	4 cut(s)	401, 423, 550, 883
CviAII	CATG	6 cut(s)	77, 86, 350, 689, 856, 863
CviQI	GTAC	4 cut(s)	401, 423, 550, 883
DdeI	CTNAG	6 cut(s)	27, 606, 718, 787, 900, 1089
DpnI	GATC	5 cut(s)	24, 525, 715, 726, 816
DpnII	GATC	5 cut(s)	22, 523, 713, 724, 814
DraI	TTTAAA	1 cut(s)	531
DrdI	GACNNNNNNGTC	1 cut(s)	618
DseDI	GACNNNNNNGTC	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
EciI	GGCGGA	1 cut(s)	1004
Eco32I	GATATC	1 cut(s)	781
Eco57I	CTGAAG	1 cut(s)	270
Eco72I	CACGTG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	127
FaeI	CATG	6 cut(s)	80, 89, 353, 692, 859, 866
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	6 cut(s)	76, 85, 349, 688, 855, 862
FauI	CCCGC	1 cut(s)	703
FauNDI	CATATG	1 cut(s)	121
Fnu4HI	GCNGC	5 cut(s)	143, 333, 708, 987, 1055
FokI	GGATG	2 cut(s)	739, 1061
Fsp4HI	GCNGC	5 cut(s)	143, 333, 708, 987, 1055
FspBI	CTAG	3 cut(s)	8, 645, 662
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	5 cut(s)	143, 333, 708, 987, 1055
GsuI	CTGGAG	2 cut(s)	311, 1094
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	241, 271
HapII	CCGG	2 cut(s)	426, 576
HgaI	GACGC	2 cut(s)	605, 1068
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	6 cut(s)	80, 89, 353, 692, 859, 866
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	5 cut(s)	373, 676, 949, 1087, 1099
HpaII	CCGG	2 cut(s)	426, 576
HphI	GGTGA	2 cut(s)	621, 1079
Hpy166II	GTNNAC	5 cut(s)	176, 401, 761, 1040, 1070
Hpy188I	TCNGA	9 cut(s)	22, 162, 372, 381, 585, 745, 790, 901, 976
Hpy188III	TCNNGA	7 cut(s)	26, 290, 639, 689, 818, 913, 953
Hpy8I	GTNNAC	5 cut(s)	176, 401, 761, 1040, 1070
Hpy99I	CGWCG	2 cut(s)	621, 1062
HpyAV	CCTTC	6 cut(s)	245, 319, 642, 785, 805, 957
HpyCH4III	ACNGT	4 cut(s)	544, 589, 683, 897
HpyCH4IV	ACGT	4 cut(s)	73, 337, 798, 1030
HpyCH4V	TGCA	7 cut(s)	119, 125, 335, 658, 707, 766, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 394
HpyF3I	CTNAG	6 cut(s)	27, 606, 718, 787, 900, 1089
HpySE526I	ACGT	4 cut(s)	73, 337, 798, 1030
Hsp92II	CATG	6 cut(s)	80, 89, 353, 692, 859, 866
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	22, 523, 713, 724, 814
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	4 cut(s)	154, 319, 719, 1066
LweI	GCATC	6 cut(s)	134, 704, 736, 918, 969, 1011
MaeI	CTAG	3 cut(s)	8, 645, 662
MaeII	ACGT	4 cut(s)	73, 337, 798, 1030
MaeIII	GTNAC	1 cut(s)	669
MalI	GATC	5 cut(s)	24, 525, 715, 726, 816
MboI	GATC	5 cut(s)	22, 523, 713, 724, 814
MboII	GAAGA	8 cut(s)	499, 533, 568, 627, 734, 949, 1016, 1030
MflI	RGATCY	3 cut(s)	713, 724, 814
MluCI	AATT	8 cut(s)	16, 64, 165, 214, 457, 649, 927, 942
MlyI	GAGTC	1 cut(s)	1081
MnlI	CCTC	6 cut(s)	22, 425, 515, 796, 801, 1058
Mph1103I	ATGCAT	1 cut(s)	127
MseI	TTAA	6 cut(s)	15, 42, 227, 405, 530, 1011
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	2 cut(s)	426, 576
MspR9I	CCNGG	2 cut(s)	427, 449
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	2 cut(s)	986, 1062
MwoI	GCNNNNNNNGC	2 cut(s)	338, 394
NciI	CCSGG	1 cut(s)	427
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	5 cut(s)	22, 523, 713, 724, 814
NlaIII	CATG	6 cut(s)	80, 89, 353, 692, 859, 866
NlaIV	GGNNCC	3 cut(s)	453, 715, 834
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	89
PagI	TCATGA	1 cut(s)	688
PfeI	GAWTC	4 cut(s)	373, 676, 949, 1099
PflFI	GACNNNGTC	1 cut(s)	615
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	5 cut(s)	144, 334, 709, 988, 1056
PleI	GAGTC	1 cut(s)	1081
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	1081
Ppu21I	YACGTR	1 cut(s)	338
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	447
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	453, 715, 834
PsuI	RGATCY	3 cut(s)	713, 724, 814
PsyI	GACNNNGTC	1 cut(s)	615
RsaI	GTAC	4 cut(s)	402, 424, 551, 884
RsaNI	GTAC	4 cut(s)	401, 423, 550, 883
SaqAI	TTAA	6 cut(s)	15, 42, 227, 405, 530, 1011
SatI	GCNGC	5 cut(s)	143, 333, 708, 987, 1055
Sau3AI	GATC	5 cut(s)	22, 523, 713, 724, 814
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	1081
ScrFI	CCNGG	2 cut(s)	427, 449
SfaNI	GCATC	6 cut(s)	134, 704, 736, 918, 969, 1011
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
Sse9I	AATT	8 cut(s)	16, 64, 165, 214, 457, 649, 927, 942
SsiI	CCGC	5 cut(s)	309, 710, 986, 989, 1062
SspI	AATATT	2 cut(s)	346, 563
SspMI	CTAG	3 cut(s)	8, 645, 662
StyD4I	CCNGG	2 cut(s)	425, 447
TaaI	ACNGT	4 cut(s)	544, 589, 683, 897
TaiI	ACGT	4 cut(s)	76, 340, 801, 1033
TaqI	TCGA	2 cut(s)	912, 952
TaqII	GACCGA	1 cut(s)	960
TasI	AATT	8 cut(s)	16, 64, 165, 214, 457, 649, 927, 942
TatI	WGTACW	3 cut(s)	400, 549, 882
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	4 cut(s)	373, 676, 949, 1099
Tru1I	TTAA	6 cut(s)	15, 42, 227, 405, 530, 1011
Tru9I	TTAA	6 cut(s)	15, 42, 227, 405, 530, 1011
TscAI	CASTG	1 cut(s)	763
TseI	GCWGC	4 cut(s)	142, 332, 707, 1054
TspDTI	ATGAA	4 cut(s)	338, 705, 741, 1095
TspGWI	ACGGA	3 cut(s)	104, 882, 1012
TspRI	CASTG	1 cut(s)	763
Tth111I	GACNNNGTC	1 cut(s)	615
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	3 cut(s)	457, 649, 927
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	3 cut(s)	8, 645, 662
ZrmI	AGTACT	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.