RLG00000022129

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008153
Physical Location & Seq
Forward (+)
81190641 .. 81196710
6070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022129

Sequence Viewer

Length: 1647 bp
ATGAGCAATTCAAACTTTGTAGATTTGTCTAGTGATGGTGATGATGAAACCGGCGTTTCGAACTCTGTTTCTCCAACGCTAATATCTCAGCAATTCTGGAAAGCTGGAAACTACAAGAGTGCACAGAGACAGGGTCATAAAGCCGGAAATAAAAATCAACAAAACCATATGCGGATACACCCTATGTTCCTTCACTCAAATGCCACTTCACATAAGTGGGCTTTTGGAGGCATAGCAGAGTTGCTCGACAATGCAGTTGATGAGATACAAAATGGAGCAACTTATGTTTCCATAGACAAGAGTACTACTCCATGGGATGGGAAGCCAGCTTTGTTAATTCAAGATGACGGCGGCGGAATGGACCCAGAGGCTATAAGGCGCTGTATGAGCTTTGGATTTACAGATAAGATATCAAAATTGACCATTGGACAGTATGGAAATGGTTTCAAGACCAGCTCTATGAGACTTGGAGCAGATGTTATGGTCTTCAGTCGCCACAGGTCACTGACTCAAAGTGTTGGACTCCTTTCATATACATTTTTGAGTCGGATGGGCTATGATGAGATACTTGTACCAATGGTGGATTATGAGTTTAACATATCATCTAGAACATATCAGCCTTTACTGCAACATGGTAAACAACAATTTTCCTCAAATTTGACCATGATGTTGCAATGGTCTCCTTATTCAACAGAAGAAGAGTTGCTAAAGCAATTTGATGATATAGGGCCTCATGGAACGAAAATTGTCATATACAGTCTTTGGTTGAATGATGATGGGGATATGGAACTAGATTTCAATTCTGATCCTAAGGATATTTGTATCAATGGTGGAAAAACAAGTCAGAAAAGCAAACCAATTTTTTACCATCATGTGGCTAACCAATTTCAGTTCTCTCTTCGTGTGTATGCATCGATCTTGTATTGGCGATTACCTAAGTACTTCAAAATAATATTGCGTGTTTTGGAAGCCAATCATATCCAGCCTACTCACAATAAGCAAGATTTTGAGAAAACTCCCCTCTTCCAAAAGCTTGAAGATCGTTTAAGGCAAATGACATTGGAGTACTGGCATCTACACTGTGAGTTAATTGGTTATCCGAAACTTAAAACAAATCACCGTATAGAATTGGATCATCAGGAATCACCTTCTTCAAGAACTCGAAATTGCTTGTACCAGCCTGAGTCACTAGATCATGGTTCTCAAAATGAAAGTTCAGGAGCATCTTTGAATGCAGGGGGTTTCTTTGAAGATTCTGAAGTCACTACATTAGAAGTCTCATCAGGAGGATTGGGAAAGTCAACAGACATCCACAAAGTCAGGAACCAAGAAGGACTCATCGTAAAGAGGAAGCATTTTGATCCTCCAGTAAGCCTACAACATGCAAAAAGGCACATGGGGCCCTGTGGAACTCAGATCGAACACTATACTGAACAGCCTGATAGCACTGTAGTTTCAGAGAAGATAAAACTGATGCAAACAAATAAAAGGCTCTGTTCACAGCTGTCAGAAAAGGAGAAAACGGTGGAAGAACTCAATTTGAAGGTTCAACAACTTATAAGTGAACAAGAGAGCTTACGGCTAGAATTCACACAGATGCTGCTCGAAGCAAAATTGTTGGAGGGGAGCAGTATAGATTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

549

Amino Acids

62.38

Weight (kDa)

6.2

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 77 - 185 2.3e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c PF02518 78 - 155 3.9e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5 PF17942 321 - 357 5.6e-12 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1559
AccB7I CCANNNNNTGG 2 cut(s) 317, 874
AciI CCGC 3 cut(s) 172, 351, 354
AclWI GGATC 3 cut(s) 800, 1140, 1355
AcsI RAATTY 2 cut(s) 655, 1586
AcuI CTGAAG 2 cut(s) 472, 1278
AfaI GTAC 5 cut(s) 304, 573, 941, 1067, 1175
AfiI CCNNNNNNNGG 2 cut(s) 317, 874
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 7 cut(s) 104, 329, 390, 456, 1033, 1504, 1575
AluI AGCT 7 cut(s) 104, 329, 390, 456, 1033, 1504, 1575
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 4 cut(s) 121, 457, 684, 1282
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 3 cut(s) 800, 1140, 1355
AlwNI CAGNNNCTG 1 cut(s) 1600
AoxI GGCC 2 cut(s) 728, 1400
ApaI GGGCCC 1 cut(s) 1404
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 1600
ApoI RAATTY 2 cut(s) 655, 1586
AspLEI GCGC 1 cut(s) 381
AspS9I GGNCC 4 cut(s) 361, 728, 1400, 1401
AsuHPI GGTGA 3 cut(s) 50, 1109, 1137
AsuII TTCGAA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 810
BaeGI GKGCMC 2 cut(s) 124, 1404
BanII GRGCYC 1 cut(s) 1404
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 1587
BccI CCATC 5 cut(s) 29, 311, 544, 770, 876
BceAI ACGGC 2 cut(s) 364, 1595
BciVI GTATCC 1 cut(s) 168
BcoDI GTCTC 4 cut(s) 121, 457, 684, 1282
BfaI CTAG 6 cut(s) 30, 606, 791, 1190, 1583, 1645
BfmI CTRYAG 1 cut(s) 1449
BfoI RGCGCY 1 cut(s) 382
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 2 cut(s) 352, 1601
BlsI GCNGC 2 cut(s) 353, 1602
BmcAI AGTACT 3 cut(s) 304, 941, 1067
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 4 cut(s) 361, 728, 1400, 1401
BmiI GGNNCC 4 cut(s) 363, 1325, 1401, 1402
BmsI GCATC 5 cut(s) 920, 1081, 1232, 1464, 1587
BpiI GAAGAC 1 cut(s) 478
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BpmI CTGGAG 1 cut(s) 1350
Bpu14I TTCGAA 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 914
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 874
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 1073, 1367
Bse21I CCTNAGG 1 cut(s) 810
Bse3DI GCAATG 1 cut(s) 680
BseCI ATCGAT 1 cut(s) 914
BseDI CCNNGG 1 cut(s) 311
BseGI GGATG 3 cut(s) 322, 555, 1308
BseLI CCNNNNNNNGG 2 cut(s) 317, 874
BseMI GCAATG 1 cut(s) 680
BseMII CTCAG 3 cut(s) 101, 1173, 1427
BseNI ACTGG 2 cut(s) 1073, 1367
BseSI GKGCMC 2 cut(s) 124, 1404
BseXI GCAGC 1 cut(s) 1587
BshFI GGCC 2 cut(s) 730, 1402
BshVI ATCGAT 1 cut(s) 914
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 51, 144
BslI CCNNNNNNNGG 2 cut(s) 317, 874
BsmAI GTCTC 4 cut(s) 121, 457, 684, 1282
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 2 cut(s) 730, 1402
Bso31I GGTCTC 1 cut(s) 684
Bsp119I TTCGAA 1 cut(s) 59
Bsp120I GGGCCC 1 cut(s) 1400
Bsp1286I GDGCHC 2 cut(s) 124, 1404
Bsp143I GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
Bsp19I CCATGG 1 cut(s) 311
BspACI CCGC 3 cut(s) 172, 351, 354
BspANI GGCC 2 cut(s) 730, 1402
BspCNI CTCAG 3 cut(s) 100, 1174, 1426
BspDI ATCGAT 1 cut(s) 914
BspLI GGNNCC 4 cut(s) 363, 1325, 1401, 1402
BspPI GGATC 3 cut(s) 800, 1140, 1355
BspT104I TTCGAA 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 680
BsrFI RCCGGY 1 cut(s) 50
BsrI ACTGG 2 cut(s) 1073, 1367
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 311
BssMI GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
BssT1I CCWWGG 1 cut(s) 311
Bst4CI ACNGT 6 cut(s) 432, 758, 1082, 1121, 1450, 1525
Bst6I CTCTTC 3 cut(s) 693, 903, 1028
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 5 cut(s) 87, 810, 936, 1182, 1413
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 3 cut(s) 322, 555, 1308
BstH2I RGCGCY 1 cut(s) 382
BstHHI GCGC 1 cut(s) 381
BstKTI GATC 7 cut(s) 808, 918, 1042, 1135, 1195, 1363, 1419
BstMAI GTCTC 4 cut(s) 121, 457, 684, 1282
BstMBI GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
BstMWI GCNNNNNNNGC 3 cut(s) 387, 625, 1399
BstNSI RCATGY 1 cut(s) 1385
BstSFI CTRYAG 1 cut(s) 1449
BstSLI GKGCMC 2 cut(s) 124, 1404
BstV1I GCAGC 1 cut(s) 1587
BstV2I GAAGAC 1 cut(s) 478
Bsu15I ATCGAT 1 cut(s) 914
Bsu36I CCTNAGG 1 cut(s) 810
BsuI GTATCC 1 cut(s) 168
BsuRI GGCC 2 cut(s) 730, 1402
BsuTUI ATCGAT 1 cut(s) 914
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 3 cut(s) 322, 555, 1308
BtsIMutI CAGTG 3 cut(s) 503, 1078, 1446
Cac8I GCNNGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 1600
CfoI GCGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 4 cut(s) 361, 728, 1400, 1401
ClaI ATCGAT 1 cut(s) 914
Csp6I GTAC 5 cut(s) 303, 572, 940, 1066, 1174
CviAII CATG 8 cut(s) 312, 632, 664, 734, 872, 1196, 1382, 1396
CviQI GTAC 5 cut(s) 303, 572, 940, 1066, 1174
DdeI CTNAG 5 cut(s) 87, 810, 936, 1182, 1413
DpnI GATC 7 cut(s) 807, 917, 1041, 1134, 1194, 1362, 1418
DpnII GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
Eam1104I CTCTTC 3 cut(s) 693, 903, 1028
EarI CTCTTC 3 cut(s) 693, 903, 1028
EciI GGCGGA 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 1404
Eco31I GGTCTC 1 cut(s) 684
Eco32I GATATC 1 cut(s) 411
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 2 cut(s) 472, 1278
Eco81I CCTNAGG 1 cut(s) 810
EcoO109I RGGNCCY 3 cut(s) 728, 1400, 1401
EcoRI GAATTC 1 cut(s) 1586
EcoRV GATATC 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 311
EcoT22I ATGCAT 1 cut(s) 913
EcoT38I GRGCYC 1 cut(s) 1404
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 8 cut(s) 315, 635, 667, 737, 875, 1199, 1385, 1399
FatI CATG 8 cut(s) 311, 631, 663, 733, 871, 1195, 1381, 1395
FauNDI CATATG 1 cut(s) 168
Fnu4HI GCNGC 2 cut(s) 352, 1601
FokI GGATG 3 cut(s) 329, 562, 1295
FriOI GRGCYC 1 cut(s) 1404
Fsp4HI GCNGC 2 cut(s) 352, 1601
FspBI CTAG 6 cut(s) 30, 606, 791, 1190, 1583, 1645
GlaI GCGC 1 cut(s) 380
GluI GCNGC 2 cut(s) 352, 1601
GsuI CTGGAG 1 cut(s) 1350
HaeII RGCGCY 1 cut(s) 382
HaeIII GGCC 2 cut(s) 730, 1402
HapII CCGG 2 cut(s) 51, 144
HhaI GCGC 1 cut(s) 381
Hin1II CATG 8 cut(s) 315, 635, 667, 737, 875, 1199, 1385, 1399
Hin6I GCGC 1 cut(s) 379
HinP1I GCGC 1 cut(s) 379
HincII GTYRAC 1 cut(s) 1302
HindII GTYRAC 1 cut(s) 1302
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 7 cut(s) 508, 522, 544, 1142, 1184, 1253, 1335
HpaII CCGG 2 cut(s) 51, 144
HphI GGTGA 3 cut(s) 50, 1109, 1137
Hpy166II GTNNAC 5 cut(s) 122, 638, 1302, 1499, 1565
Hpy188I TCNGA 8 cut(s) 549, 805, 846, 1101, 1258, 1416, 1459, 1510
Hpy188III TCNNGA 9 cut(s) 97, 341, 448, 606, 1139, 1155, 1218, 1284, 1321
Hpy8I GTNNAC 5 cut(s) 122, 638, 1302, 1499, 1565
HpyAV CCTTC 4 cut(s) 200, 1158, 1325, 1537
HpyCH4III ACNGT 6 cut(s) 432, 758, 1082, 1121, 1450, 1525
HpyCH4V TGCA 8 cut(s) 122, 254, 628, 673, 911, 1235, 1385, 1477
HpyF10VI GCNNNNNNNGC 3 cut(s) 387, 625, 1399
HpyF3I CTNAG 5 cut(s) 87, 810, 936, 1182, 1413
Hsp92II CATG 8 cut(s) 315, 635, 667, 737, 875, 1199, 1385, 1399
HspAI GCGC 1 cut(s) 379
Kzo9I GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
LmnI GCTCC 4 cut(s) 275, 470, 1220, 1626
Lsp1109I GCAGC 1 cut(s) 1587
LweI GCATC 5 cut(s) 920, 1081, 1232, 1464, 1587
MaeI CTAG 6 cut(s) 30, 606, 791, 1190, 1583, 1645
MaeIII GTNAC 3 cut(s) 501, 1185, 1261
MalI GATC 7 cut(s) 807, 917, 1041, 1134, 1194, 1362, 1418
MboI GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
MhlI GDGCHC 2 cut(s) 124, 1404
MlyI GAGTC 5 cut(s) 502, 516, 553, 1193, 1329
MmeI TCCRAC 4 cut(s) 98, 499, 527, 1599
MnlI CCTC 9 cut(s) 221, 361, 661, 741, 1031, 1280, 1341, 1374, 1615
Mph1103I ATGCAT 1 cut(s) 913
MseI TTAA 5 cut(s) 335, 594, 1046, 1088, 1107
MslI CAYNNNNRTG 3 cut(s) 198, 214, 1595
MspA1I CMGCKG 1 cut(s) 1504
MspI CCGG 2 cut(s) 51, 144
Mva1269I GAATGC 1 cut(s) 1237
MwoI GCNNNNNNNGC 3 cut(s) 387, 625, 1399
NcoI CCATGG 1 cut(s) 311
NdeI CATATG 1 cut(s) 168
NdeII GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
NlaIII CATG 8 cut(s) 315, 635, 667, 737, 875, 1199, 1385, 1399
NlaIV GGNNCC 4 cut(s) 363, 1325, 1401, 1402
NmuCI GTSAC 3 cut(s) 501, 1185, 1261
NsiI ATGCAT 1 cut(s) 913
NspI RCATGY 1 cut(s) 1385
NspV TTCGAA 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 214
PctI GAATGC 1 cut(s) 1237
PfeI GAWTC 2 cut(s) 1142, 1253
PflFI GACNNNGTC 1 cut(s) 132
PflMI CCANNNNNTGG 2 cut(s) 317, 874
PkrI GCNGC 2 cut(s) 353, 1602
PleI GAGTC 5 cut(s) 502, 516, 552, 1192, 1329
PpsI GAGTC 5 cut(s) 502, 516, 552, 1192, 1329
PsiI TTATAA 1 cut(s) 1559
PspN4I GGNNCC 4 cut(s) 363, 1325, 1401, 1402
PspOMI GGGCCC 1 cut(s) 1400
PspPI GGNCC 4 cut(s) 361, 728, 1400, 1401
PstNI CAGNNNCTG 1 cut(s) 1600
PsyI GACNNNGTC 1 cut(s) 132
PvuII CAGCTG 1 cut(s) 1504
RsaI GTAC 5 cut(s) 304, 573, 941, 1067, 1175
RsaNI GTAC 5 cut(s) 303, 572, 940, 1066, 1174
RseI CAYNNNNRTG 3 cut(s) 198, 214, 1595
SaqAI TTAA 5 cut(s) 335, 594, 1046, 1088, 1107
SatI GCNGC 2 cut(s) 352, 1601
Sau3AI GATC 7 cut(s) 805, 915, 1039, 1132, 1192, 1360, 1416
Sau96I GGNCC 4 cut(s) 361, 728, 1400, 1401
ScaI AGTACT 3 cut(s) 304, 941, 1067
SchI GAGTC 5 cut(s) 502, 516, 553, 1193, 1329
SduI GDGCHC 2 cut(s) 124, 1404
SfaNI GCATC 5 cut(s) 920, 1081, 1232, 1464, 1587
SfcI CTRYAG 1 cut(s) 1449
SfuI TTCGAA 1 cut(s) 59
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 3 cut(s) 198, 214, 1595
SsiI CCGC 3 cut(s) 172, 351, 354
SspI AATATT 1 cut(s) 954
SspMI CTAG 6 cut(s) 30, 606, 791, 1190, 1583, 1645
StyI CCWWGG 1 cut(s) 311
TaaI ACNGT 6 cut(s) 432, 758, 1082, 1121, 1450, 1525
TaqI TCGA 6 cut(s) 59, 246, 914, 1162, 1419, 1605
TatI WGTACW 3 cut(s) 302, 939, 1065
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 2 cut(s) 1142, 1253
Tru1I TTAA 5 cut(s) 335, 594, 1046, 1088, 1107
Tru9I TTAA 5 cut(s) 335, 594, 1046, 1088, 1107
TscAI CASTG 3 cut(s) 510, 1085, 1453
TseFI GTSAC 3 cut(s) 501, 1185, 1261
TseI GCWGC 1 cut(s) 1600
Tsp45I GTSAC 3 cut(s) 501, 1185, 1261
TspDTI ATGAA 3 cut(s) 60, 519, 1224
TspRI CASTG 3 cut(s) 510, 1085, 1453
Tth111I GACNNNGTC 1 cut(s) 132
Van91I CCANNNNNTGG 2 cut(s) 317, 874
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 2 cut(s) 655, 1586
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 1 cut(s) 1385
XspI CTAG 6 cut(s) 30, 606, 791, 1190, 1583, 1645
ZrmI AGTACT 3 cut(s) 304, 941, 1067
Zsp2I ATGCAT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.