Rh2AG638200

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008153
Physical Location & Seq
Forward (+)
86244358 .. 86252005
7648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG638200.1

Sequence Viewer

Length: 1719 bp
ATGCGCATACACCCTATGTTCCTTCACTCAAATGCCACTTCACATAAGTGGGCTTTTGGAGGCATAGCAGAGTTGCTCGACAATGCAGTTGATGAGATACAAAATGGAGCAACTTATGTTTCCATAGACAAGAGTTCTACTCCATGGGATGGGAAGCCAGCTTTGTTAATTCAAGATGACGGCGGCGGAATGGACCCAGAGGCTATAAGGCGCTGTATGAGCTTTGGATTTACAGATAAGATATCAAAATTGACCATTGGACAGTATGGAAATGGTTTCAAGACCAGCTCTATGAGACTTGGAGCAGATGTTATGGTCTTCAGTCGCCACAGGTCACTGACTCAAAGTGTTGGACTCCTTTCATATACATTTTTGAGTCGGATGGGCTATGATGAGATACTTGTACCAACGGTGGATTATGAGTTTAACATATCATCTAGAACATATCAGCCCTTACTGCAACATGGTAAACAACAATTTTCCTCAAATTTGACCATGATGTTGCAATGGTCTCCTTATTCAACAGAAGAAGAGTTGCTGAAGCAATTTGATGATATAGGGCCTCATGGGACGAAAATTGTCATATACAGTCTTTGGTTGAATGATGATGCGGATATGGAACTAGATTTCAATTCTGATCCTAAGGATATTTGTATCAATGGTGGAAAAACAAGTCAGAAAAGCAAACCAATTTTTTACCATCATGTGGCTAACCAATTTCAGTTCTCTCTTCGTGTGTATGCATCGATCTTGTATTGGCGGTTACCTAAGTACTTCAAAATAATATTGCGTGGACGAGTGGTTGAACACTACAATATTGCCTTGGATCTTAAGTTTCATGAGATCATCAAGTATAGGCCACAAACTTCTGGAAATATGAAGTCTGAGTTAACTACCGATATAGGGTTTCTGAAGGAAGCTCCACATGTGAATATTCATGGTTTCTGTATCTACCATCGGAATCGTCTAATACTGCCATTTTGTCGTGCACTTAAAAGCATGACAAATAGAACTGGGCAAGGTGTTGTGGGTGTTTTGGAAGCCAATCATATCCAGCCTACTCACAATAAGCAAGATTTTGAGAAAACTCCCCTCTTCCAAAAGCTTGAAGATCGTTTGAGGCAAATGACGTTGGAGTACTGGCATCTACACTGTGAATTAATTGGTTATCCGAAACTTAAAACAAATCACCGTATAGAATTGGATCATCAGGAATCACCTTCTTCAAGAACTCGAAATTGCTTTTACCAGCCTGAGTCACTAGATCATGGTTCTCAAAATGAAAGTTCAGGAGCATCTTTCAATGCAGTGGATTTCTTTGAAGATTCTGAAGTCACTACATTAGAAGTCTCATCAGGAGGACTGGGAAAGTCAACAGACATCCACAAAGTCAGGAACCAAGAAGGACTCATCGTAAAGAGGAAGCATCTTGATCCTCCAGTAAGCCTACAACATGCAAAAAGGCACATGGGGCCCTGTGGAACTCAGATCGAACACTATACTGAACAGCCTGATAGCACTGTAGTTTCAGAGAAGATAAAACTGATGCAAACAAATAAAAGGCTCCGCTCACAGTTGTCAGAAAAGGAGAGAACGGTGGAAGAACTCAATTTGAAGGTTCAACAACTTAGAAGTGAACAAGAGAGCTTACGGCTAGAATTCACACAGATGCTGCTCGAAGCAAAATTGTTGGAGGGGAACAGTATAGATTTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

572

Amino Acids

65.67

Weight (kDa)

6.81

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 21 - 130 3.1e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c PF02518 22 - 99 4.4e-06 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Morc6_S5 PF17942 242 - 381 1.3e-55 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB7I CCANNNNNTGG 2 cut(s) 149, 706
AccBSI CCGCTC 1 cut(s) 1569
AciI CCGC 5 cut(s) 183, 186, 611, 760, 1567
AclWI GGATC 4 cut(s) 632, 834, 1212, 1427
AcsI RAATTY 2 cut(s) 487, 1658
AcuI CTGAAG 4 cut(s) 304, 560, 932, 1350
AfaI GTAC 3 cut(s) 405, 773, 1139
AfiI CCNNNNNNNGG 3 cut(s) 149, 706, 903
AflII CTTAAG 1 cut(s) 830
AflIII ACRYGT 1 cut(s) 925
AleI CACNNNNGTG 1 cut(s) 46
AluBI AGCT 6 cut(s) 161, 222, 288, 920, 1105, 1647
AluI AGCT 6 cut(s) 161, 222, 288, 920, 1105, 1647
Alw21I GWGCWC 1 cut(s) 991
Alw26I GTCTC 3 cut(s) 289, 516, 1354
Alw44I GTGCAC 1 cut(s) 987
AlwI GGATC 4 cut(s) 632, 834, 1212, 1427
AlwNI CAGNNNCTG 1 cut(s) 1672
AoxI GGCC 3 cut(s) 560, 857, 1472
ApaI GGGCCC 1 cut(s) 1476
ApaLI GTGCAC 1 cut(s) 987
ApeKI GCWGC 1 cut(s) 1672
ApoI RAATTY 2 cut(s) 487, 1658
AseI ATTAAT 1 cut(s) 1160
AspLEI GCGC 2 cut(s) 6, 213
AspS9I GGNCC 4 cut(s) 193, 560, 1472, 1473
AsuHPI GGTGA 2 cut(s) 1181, 1209
AvaII GGWCC 1 cut(s) 193
AxyI CCTNAGG 1 cut(s) 642
BaeGI GKGCMC 2 cut(s) 991, 1476
BanII GRGCYC 1 cut(s) 1476
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 991
BbvI GCAGC 1 cut(s) 1659
BccI CCATC 4 cut(s) 143, 376, 708, 963
BceAI ACGGC 2 cut(s) 196, 1667
BcoDI GTCTC 3 cut(s) 289, 516, 1354
BfaI CTAG 5 cut(s) 438, 623, 1262, 1655, 1717
BfmI CTRYAG 1 cut(s) 1521
BfoI RGCGCY 1 cut(s) 214
BfrI CTTAAG 1 cut(s) 830
BisI GCNGC 2 cut(s) 184, 1673
BlsI GCNGC 2 cut(s) 185, 1674
BmcAI AGTACT 2 cut(s) 773, 1139
Bme18I GGWCC 1 cut(s) 193
BmgT120I GGNCC 4 cut(s) 193, 560, 1472, 1473
BmiI GGNNCC 5 cut(s) 195, 1397, 1473, 1474, 1565
BmrI ACTGGG 2 cut(s) 1023, 1373
BmsI GCATC 7 cut(s) 598, 752, 1153, 1304, 1435, 1536, 1659
BmuI ACTGGG 2 cut(s) 1023, 1373
BpiI GAAGAC 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 124, 156
BpmI CTGGAG 1 cut(s) 1422
Bsa29I ATCGAT 1 cut(s) 746
BsaI GGTCTC 1 cut(s) 516
BsaJI CCNNGG 2 cut(s) 143, 822
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 706, 903
Bse1I ACTGG 4 cut(s) 1018, 1145, 1368, 1439
Bse21I CCTNAGG 1 cut(s) 642
Bse3DI GCAATG 1 cut(s) 512
BseCI ATCGAT 1 cut(s) 746
BseDI CCNNGG 2 cut(s) 143, 822
BseGI GGATG 3 cut(s) 154, 387, 1380
BseLI CCNNNNNNNGG 3 cut(s) 149, 706, 903
BseMI GCAATG 1 cut(s) 512
BseMII CTCAG 3 cut(s) 876, 1245, 1499
BseNI ACTGG 4 cut(s) 1018, 1145, 1368, 1439
BseSI GKGCMC 2 cut(s) 991, 1476
BseXI GCAGC 1 cut(s) 1659
BshFI GGCC 3 cut(s) 562, 859, 1474
BshVI ATCGAT 1 cut(s) 746
BsiHKAI GWGCWC 1 cut(s) 991
BslFI GGGAC 1 cut(s) 583
BslI CCNNNNNNNGG 3 cut(s) 149, 706, 903
BsmAI GTCTC 3 cut(s) 289, 516, 1354
BsmFI GGGAC 1 cut(s) 583
BsnI GGCC 3 cut(s) 562, 859, 1474
Bso31I GGTCTC 1 cut(s) 516
Bsp120I GGGCCC 1 cut(s) 1472
Bsp1286I GDGCHC 2 cut(s) 991, 1476
Bsp143I GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 5 cut(s) 183, 186, 611, 760, 1567
BspANI GGCC 3 cut(s) 562, 859, 1474
BspCNI CTCAG 3 cut(s) 877, 1246, 1498
BspDI ATCGAT 1 cut(s) 746
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 5 cut(s) 195, 1397, 1473, 1474, 1565
BspPI GGATC 4 cut(s) 632, 834, 1212, 1427
BspTI CTTAAG 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 516
BsrBI CCGCTC 1 cut(s) 1569
BsrDI GCAATG 1 cut(s) 512
BsrI ACTGG 4 cut(s) 1018, 1145, 1368, 1439
BssECI CCNNGG 2 cut(s) 143, 822
BssMI GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
BssT1I CCWWGG 2 cut(s) 143, 822
Bst4CI ACNGT 9 cut(s) 264, 412, 590, 1154, 1193, 1522, 1575, 1597, 1703
Bst6I CTCTTC 3 cut(s) 525, 735, 1100
BstAFI CTTAAG 1 cut(s) 830
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 6 cut(s) 642, 768, 885, 1254, 1485, 1628
BstDSI CCRYGG 1 cut(s) 143
BstEII GGTNACC 1 cut(s) 762
BstF5I GGATG 3 cut(s) 154, 387, 1380
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 2 cut(s) 6, 213
BstKTI GATC 9 cut(s) 640, 750, 829, 846, 1114, 1207, 1267, 1435, 1491
BstMAI GTCTC 3 cut(s) 289, 516, 1354
BstMBI GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
BstMWI GCNNNNNNNGC 3 cut(s) 219, 457, 1471
BstNSI RCATGY 2 cut(s) 929, 1457
BstPI GGTNACC 1 cut(s) 762
BstSFI CTRYAG 1 cut(s) 1521
BstSLI GKGCMC 2 cut(s) 991, 1476
BstV1I GCAGC 1 cut(s) 1659
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
Bsu15I ATCGAT 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 3 cut(s) 562, 859, 1474
BsuTUI ATCGAT 1 cut(s) 746
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 3 cut(s) 154, 387, 1380
BtsI GCAGTG 1 cut(s) 1314
BtsIMutI CAGTG 4 cut(s) 335, 1150, 1314, 1518
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 1672
CciI TCATGA 1 cut(s) 838
CfoI GCGC 2 cut(s) 6, 213
Cfr13I GGNCC 4 cut(s) 193, 560, 1472, 1473
ClaI ATCGAT 1 cut(s) 746
Csp6I GTAC 3 cut(s) 404, 772, 1138
CviQI GTAC 3 cut(s) 404, 772, 1138
DdeI CTNAG 6 cut(s) 642, 768, 885, 1254, 1485, 1628
DpnI GATC 9 cut(s) 639, 749, 828, 845, 1113, 1206, 1266, 1434, 1490
DpnII GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
Eam1104I CTCTTC 3 cut(s) 525, 735, 1100
EarI CTCTTC 3 cut(s) 525, 735, 1100
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 2 cut(s) 143, 822
Eco24I GRGCYC 1 cut(s) 1476
Eco31I GGTCTC 1 cut(s) 516
Eco32I GATATC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 4 cut(s) 304, 560, 932, 1350
Eco81I CCTNAGG 1 cut(s) 642
Eco91I GGTNACC 1 cut(s) 762
EcoO109I RGGNCCY 3 cut(s) 560, 1472, 1473
EcoO65I GGTNACC 1 cut(s) 762
EcoRI GAATTC 1 cut(s) 1658
EcoRV GATATC 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 143, 822
EcoT22I ATGCAT 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 1476
ErhI CCWWGG 2 cut(s) 143, 822
FaqI GGGAC 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 184, 1673
FokI GGATG 3 cut(s) 161, 394, 1367
FriOI GRGCYC 1 cut(s) 1476
Fsp4HI GCNGC 2 cut(s) 184, 1673
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 5 cut(s) 438, 623, 1262, 1655, 1717
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 212
GluI GCNGC 2 cut(s) 184, 1673
GsuI CTGGAG 1 cut(s) 1422
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 3 cut(s) 562, 859, 1474
HhaI GCGC 2 cut(s) 6, 213
Hin6I GCGC 2 cut(s) 4, 211
HinP1I GCGC 2 cut(s) 4, 211
HincII GTYRAC 2 cut(s) 891, 1374
HindII GTYRAC 2 cut(s) 891, 1374
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 8 cut(s) 340, 354, 376, 961, 1214, 1256, 1325, 1407
HpaI GTTAAC 1 cut(s) 891
HphI GGTGA 2 cut(s) 1181, 1209
Hpy166II GTNNAC 6 cut(s) 470, 794, 891, 989, 1374, 1637
Hpy8I GTNNAC 6 cut(s) 470, 794, 891, 989, 1374, 1637
HpyAV CCTTC 5 cut(s) 32, 907, 1230, 1397, 1609
HpyCH4III ACNGT 9 cut(s) 264, 412, 590, 1154, 1193, 1522, 1575, 1597, 1703
HpyCH4IV ACGT 1 cut(s) 1130
HpyCH4V TGCA 8 cut(s) 86, 460, 505, 743, 989, 1307, 1457, 1549
HpyF10VI GCNNNNNNNGC 3 cut(s) 219, 457, 1471
HpyF3I CTNAG 6 cut(s) 642, 768, 885, 1254, 1485, 1628
HpySE526I ACGT 1 cut(s) 1130
HspAI GCGC 2 cut(s) 4, 211
KspAI GTTAAC 1 cut(s) 891
Kzo9I GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
LmnI GCTCC 5 cut(s) 107, 302, 925, 1292, 1569
Lsp1109I GCAGC 1 cut(s) 1659
LweI GCATC 7 cut(s) 598, 752, 1153, 1304, 1435, 1536, 1659
MaeI CTAG 5 cut(s) 438, 623, 1262, 1655, 1717
MaeII ACGT 1 cut(s) 1130
MaeIII GTNAC 4 cut(s) 333, 762, 1257, 1333
MalI GATC 9 cut(s) 639, 749, 828, 845, 1113, 1206, 1266, 1434, 1490
MbiI CCGCTC 1 cut(s) 1569
MboI GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 2 cut(s) 991, 1476
MlyI GAGTC 5 cut(s) 334, 348, 385, 1265, 1401
MmeI TCCRAC 4 cut(s) 331, 359, 1113, 1671
Mph1103I ATGCAT 1 cut(s) 745
MseI TTAA 7 cut(s) 167, 426, 831, 890, 993, 1160, 1179
MslI CAYNNNNRTG 3 cut(s) 30, 46, 1667
MspCI CTTAAG 1 cut(s) 830
MwoI GCNNNNNNNGC 3 cut(s) 219, 457, 1471
NcoI CCATGG 1 cut(s) 143
NdeII GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
NlaIV GGNNCC 5 cut(s) 195, 1397, 1473, 1474, 1565
NmuCI GTSAC 3 cut(s) 333, 1257, 1333
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 745
NspI RCATGY 2 cut(s) 929, 1457
OliI CACNNNNGTG 1 cut(s) 46
PagI TCATGA 1 cut(s) 838
PciI ACATGT 1 cut(s) 925
PfeI GAWTC 3 cut(s) 961, 1214, 1325
PflMI CCANNNNNTGG 2 cut(s) 149, 706
PkrI GCNGC 2 cut(s) 185, 1674
PleI GAGTC 5 cut(s) 334, 348, 384, 1264, 1401
PpsI GAGTC 5 cut(s) 334, 348, 384, 1264, 1401
PscI ACATGT 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 1160
PspEI GGTNACC 1 cut(s) 762
PspN4I GGNNCC 5 cut(s) 195, 1397, 1473, 1474, 1565
PspOMI GGGCCC 1 cut(s) 1472
PspPI GGNCC 4 cut(s) 193, 560, 1472, 1473
PstNI CAGNNNCTG 1 cut(s) 1672
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 3 cut(s) 405, 773, 1139
RsaNI GTAC 3 cut(s) 404, 772, 1138
RseI CAYNNNNRTG 3 cut(s) 30, 46, 1667
SaqAI TTAA 7 cut(s) 167, 426, 831, 890, 993, 1160, 1179
SatI GCNGC 2 cut(s) 184, 1673
Sau3AI GATC 9 cut(s) 637, 747, 826, 843, 1111, 1204, 1264, 1432, 1488
Sau96I GGNCC 4 cut(s) 193, 560, 1472, 1473
ScaI AGTACT 2 cut(s) 773, 1139
SchI GAGTC 5 cut(s) 334, 348, 385, 1265, 1401
SduI GDGCHC 2 cut(s) 991, 1476
SfaNI GCATC 7 cut(s) 598, 752, 1153, 1304, 1435, 1536, 1659
SfcI CTRYAG 1 cut(s) 1521
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 30, 46, 1667
SmlI CTYRAG 1 cut(s) 830
SmoI CTYRAG 1 cut(s) 830
SsiI CCGC 5 cut(s) 183, 186, 611, 760, 1567
SspI AATATT 3 cut(s) 786, 817, 934
SspMI CTAG 5 cut(s) 438, 623, 1262, 1655, 1717
StyI CCWWGG 2 cut(s) 143, 822
TaaI ACNGT 9 cut(s) 264, 412, 590, 1154, 1193, 1522, 1575, 1597, 1703
TaiI ACGT 1 cut(s) 1133
TaqI TCGA 5 cut(s) 78, 746, 1234, 1491, 1677
TatI WGTACW 2 cut(s) 771, 1137
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 3 cut(s) 961, 1214, 1325
Tru1I TTAA 7 cut(s) 167, 426, 831, 890, 993, 1160, 1179
Tru9I TTAA 7 cut(s) 167, 426, 831, 890, 993, 1160, 1179
TscAI CASTG 4 cut(s) 342, 1157, 1314, 1525
TseFI GTSAC 3 cut(s) 333, 1257, 1333
TseI GCWGC 1 cut(s) 1672
Tsp45I GTSAC 3 cut(s) 333, 1257, 1333
TspDTI ATGAA 5 cut(s) 351, 827, 893, 926, 1296
TspRI CASTG 4 cut(s) 342, 1157, 1314, 1525
Van91I CCANNNNNTGG 2 cut(s) 149, 706
Vha464I CTTAAG 1 cut(s) 830
VneI GTGCAC 1 cut(s) 987
VpaK11BI GGWCC 1 cut(s) 193
VspI ATTAAT 1 cut(s) 1160
XapI RAATTY 2 cut(s) 487, 1658
XbaI TCTAGA 1 cut(s) 437
XceI RCATGY 2 cut(s) 929, 1457
XspI CTAG 5 cut(s) 438, 623, 1262, 1655, 1717
ZrmI AGTACT 2 cut(s) 773, 1139
Zsp2I ATGCAT 1 cut(s) 745
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.