Rroxscaffold_2G00080400

MORC family CW-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008153
Physical Location & Seq
Reverse (-)
3381535 .. 3388660
7126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00080400.1

Sequence Viewer

Length: 1152 bp
ATGATGAGATACTTGTACCAATGGTGGATTATGAGTTTAACATATCATCTGGAACATATCAGCCCTTACTGCAACATGTTTGATGATATAAGGCCTCATGGAACGAAAATTGTCATATACAGTCTTTGGTTGCATGATGATGGGGATATGGAACTAGATTTCAATTTTGATCCTGAGGATATATGTATCAATGGTGGAAAAACAAGTGAGAAAAGAAAACCAATTTTTTACCATCATGTGGCTAACCAATTTCAGTTCTCTCTTCGTGTGTATGCATCGATCTTGTATTGGCGGTTACCTAAGTACTTCAAAATAATATTGCGGGGACAAGTGGTTGAACACTACTATATTGCCTTGGATCTTAAGTTTCATGAGATCATCAAGTATAGGCCACAAACTGATGAGTATATGAAGTCCGTGTTAACTACCGATATAGGGTTTCTGAAGGAAGCTCCACATGTGAATATTCATGGTTTCTGTATCTACCATCAGAATCGTCTAATACTGCCATTTTGGCGTGCACTTAAAATTATGACAAATGGTACTGGGCGAGGTGTTGTGAGTGTTTTGGAAGCCAATCATAGCCAGCCTACTCACAATAAGCAAGATTTTGAGAAAACTCCCCTCTTCCAAAAGCTTGAAGATCGTTTGAGGCAAATGACGTTGGAGTATTGGCACCTACACTGTGAATTAATTGGTTATCCGAAACTTAAAACAAATCACCGTATAGAATTGGATCATCAGGAATCACCTTCTTCAAGAACTCGAAATCGCTTATTGTACCAGCCTGAGTCACTGGATCATGGTTCTCAAAATGGAAGTTCAGGAGCATCTTTGAATGTAGTGGGTTTCTTAGAAGATTCTGAAGTCACTACATTAGAAGTCTCATCTGGAGGACTGGGAAAGTCAACAGACATCCACAAAGTCAGGAACCAAGAAGGACTCATCGTAAAGAGGAAGCATCTTGATCCTCCAGTAAGCCTACAACATGCAAAAAGGCACATGGGACCCTGTGGAACTCAGATCGAACACTATACTGAACAGCCTGATAGCACTGTAGTTTCACAGAAGATAAAACTGATGCAAACAAATAAAAGGCTCCGTTCACAGTATGTACAAAGCAATTATAGTAGTTATCTAGCACGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HATPase_c_3

Protein Analysis

383

Amino Acids

44.93

Weight (kDa)

8.73

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Morc6_S5 PF17942 86 - 225 7.6e-53 Morc6 ribosomal protein S5 domain 2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 675
AccB7I CCANNNNNTGG 1 cut(s) 238
AciI CCGC 2 cut(s) 292, 322
AclWI GGATC 5 cut(s) 164, 366, 744, 807, 962
AcuI CTGAAG 2 cut(s) 464, 885
AfaI GTAC 6 cut(s) 17, 305, 544, 782, 1116, 1147
AfiI CCNNNNNNNGG 2 cut(s) 238, 435
AflII CTTAAG 1 cut(s) 362
AflIII ACRYGT 2 cut(s) 75, 457
AgsI TTSAA 6 cut(s) 163, 310, 338, 641, 759, 838
AluBI AGCT 2 cut(s) 452, 637
AluI AGCT 2 cut(s) 452, 637
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 889
Alw44I GTGCAC 1 cut(s) 519
AlwI GGATC 5 cut(s) 164, 366, 744, 807, 962
AoxI GGCC 2 cut(s) 92, 389
ApaLI GTGCAC 1 cut(s) 519
AseI ATTAAT 1 cut(s) 692
AspS9I GGNCC 1 cut(s) 1007
AsuHPI GGTGA 2 cut(s) 713, 741
AvaII GGWCC 1 cut(s) 1007
AxyI CCTNAGG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 3 cut(s) 134, 240, 495
BcoDI GTCTC 1 cut(s) 889
BfaI CTAG 3 cut(s) 155, 1139, 1150
BfmI CTRYAG 1 cut(s) 1056
BfrI CTTAAG 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 514
BmcAI AGTACT 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 1007
BmgT120I GGNCC 1 cut(s) 1007
BmiI GGNNCC 5 cut(s) 677, 932, 1008, 1009, 1100
BmrI ACTGGG 2 cut(s) 555, 908
BmsI GCATC 4 cut(s) 284, 839, 970, 1071
BmuI ACTGGG 2 cut(s) 555, 908
BpmI CTGGAG 2 cut(s) 912, 957
Bsa29I ATCGAT 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 1145
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 435
Bse1I ACTGG 4 cut(s) 550, 801, 903, 974
Bse21I CCTNAGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 915
BseLI CCNNNNNNNGG 2 cut(s) 238, 435
BseMII CTCAG 3 cut(s) 165, 780, 1034
BseNI ACTGG 4 cut(s) 550, 801, 903, 974
BseSI GKGCMC 1 cut(s) 523
BshFI GGCC 2 cut(s) 94, 391
BshNI GGYRCC 1 cut(s) 675
BshVI ATCGAT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 523
BslFI GGGAC 2 cut(s) 339, 1020
BslI CCNNNNNNNGG 2 cut(s) 238, 435
BsmAI GTCTC 1 cut(s) 889
BsmFI GGGAC 2 cut(s) 339, 1020
BsnI GGCC 2 cut(s) 94, 391
Bsp1286I GDGCHC 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 1114
Bsp143I GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
BspACI CCGC 2 cut(s) 292, 322
BspANI GGCC 2 cut(s) 94, 391
BspCNI CTCAG 3 cut(s) 166, 781, 1033
BspDI ATCGAT 1 cut(s) 278
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 5 cut(s) 677, 932, 1008, 1009, 1100
BspPI GGATC 5 cut(s) 164, 366, 744, 807, 962
BspT107I GGYRCC 1 cut(s) 675
BspTI CTTAAG 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 1114
BsrI ACTGG 4 cut(s) 550, 801, 903, 974
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 5 cut(s) 122, 686, 725, 1057, 1110
Bst6I CTCTTC 2 cut(s) 267, 632
BstAFI CTTAAG 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 1114
BstBAI YACGTR 1 cut(s) 1145
BstC8I GCNNGC 2 cut(s) 519, 587
BstDEI CTNAG 5 cut(s) 174, 300, 789, 853, 1020
BstEII GGTNACC 1 cut(s) 294
BstF5I GGATG 1 cut(s) 915
BstKTI GATC 9 cut(s) 172, 282, 361, 378, 646, 739, 802, 970, 1026
BstMAI GTCTC 1 cut(s) 889
BstMBI GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
BstMWI GCNNNNNNNGC 2 cut(s) 69, 514
BstNSI RCATGY 3 cut(s) 79, 461, 992
BstPI GGTNACC 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 1 cut(s) 523
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
Bsu15I ATCGAT 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 94, 391
BsuTUI ATCGAT 1 cut(s) 278
BtsCI GGATG 1 cut(s) 915
BtsIMutI CAGTG 3 cut(s) 682, 794, 1053
Cac8I GCNNGC 2 cut(s) 519, 587
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 1007
ClaI ATCGAT 1 cut(s) 278
Csp6I GTAC 6 cut(s) 16, 304, 543, 781, 1115, 1146
CviQI GTAC 6 cut(s) 16, 304, 543, 781, 1115, 1146
DdeI CTNAG 5 cut(s) 174, 300, 789, 853, 1020
DpnI GATC 9 cut(s) 171, 281, 360, 377, 645, 738, 801, 969, 1025
DpnII GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
Eam1104I CTCTTC 2 cut(s) 267, 632
EarI CTCTTC 2 cut(s) 267, 632
Eco130I CCWWGG 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 1007
Eco57I CTGAAG 2 cut(s) 464, 885
Eco81I CCTNAGG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 294
EcoO109I RGGNCCY 1 cut(s) 1007
EcoO65I GGTNACC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 354
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 354
FaqI GGGAC 2 cut(s) 339, 1020
FauI CCCGC 1 cut(s) 315
FokI GGATG 1 cut(s) 902
FspBI CTAG 3 cut(s) 155, 1139, 1150
GsuI CTGGAG 2 cut(s) 912, 957
HaeIII GGCC 2 cut(s) 94, 391
HincII GTYRAC 2 cut(s) 423, 909
HindII GTYRAC 2 cut(s) 423, 909
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 493, 746, 791, 860, 942
HpaI GTTAAC 1 cut(s) 423
HphI GGTGA 2 cut(s) 713, 741
Hpy166II GTNNAC 4 cut(s) 423, 521, 909, 1106
Hpy188I TCNGA 5 cut(s) 444, 492, 705, 865, 1023
Hpy188III TCNNGA 9 cut(s) 50, 173, 371, 743, 759, 825, 891, 928, 965
Hpy8I GTNNAC 4 cut(s) 423, 521, 909, 1106
HpyAV CCTTC 3 cut(s) 439, 762, 932
HpyCH4III ACNGT 5 cut(s) 122, 686, 725, 1057, 1110
HpyCH4IV ACGT 2 cut(s) 662, 1144
HpyCH4V TGCA 6 cut(s) 72, 133, 275, 521, 992, 1084
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 514
HpyF3I CTNAG 5 cut(s) 174, 300, 789, 853, 1020
HpySE526I ACGT 2 cut(s) 662, 1144
KflI GGGWCCC 1 cut(s) 1007
KspAI GTTAAC 1 cut(s) 423
Kzo9I GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
LmnI GCTCC 3 cut(s) 457, 827, 1104
LweI GCATC 4 cut(s) 284, 839, 970, 1071
MaeI CTAG 3 cut(s) 155, 1139, 1150
MaeII ACGT 2 cut(s) 662, 1144
MaeIII GTNAC 3 cut(s) 294, 792, 868
MalI GATC 9 cut(s) 171, 281, 360, 377, 645, 738, 801, 969, 1025
MboI GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
MboII GAAGA 6 cut(s) 254, 619, 653, 747, 869, 1081
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 9 cut(s) 108, 163, 222, 248, 528, 689, 693, 731, 1123
MlyI GAGTC 2 cut(s) 800, 936
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 105, 169, 545, 635, 645, 887, 948, 981
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 6 cut(s) 38, 363, 422, 525, 692, 711
MslI CAYNNNNRTG 1 cut(s) 138
MspCI CTTAAG 1 cut(s) 362
MwoI GCNNNNNNNGC 2 cut(s) 69, 514
NdeII GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
NlaIV GGNNCC 5 cut(s) 677, 932, 1008, 1009, 1100
NmuCI GTSAC 2 cut(s) 792, 868
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 3 cut(s) 79, 461, 992
PagI TCATGA 1 cut(s) 370
PceI AGGCCT 1 cut(s) 94
PciI ACATGT 2 cut(s) 75, 457
PfeI GAWTC 3 cut(s) 493, 746, 860
PflMI CCANNNNNTGG 1 cut(s) 238
PleI GAGTC 2 cut(s) 799, 936
PpsI GAGTC 2 cut(s) 799, 936
Ppu21I YACGTR 1 cut(s) 1145
PpuMI RGGWCCY 1 cut(s) 1007
PscI ACATGT 2 cut(s) 75, 457
PshBI ATTAAT 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 1007
PspEI GGTNACC 1 cut(s) 294
PspN4I GGNNCC 5 cut(s) 677, 932, 1008, 1009, 1100
PspPI GGNCC 1 cut(s) 1007
PspPPI RGGWCCY 1 cut(s) 1007
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 6 cut(s) 17, 305, 544, 782, 1116, 1147
RsaNI GTAC 6 cut(s) 16, 304, 543, 781, 1115, 1146
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 6 cut(s) 38, 363, 422, 525, 692, 711
Sau3AI GATC 9 cut(s) 169, 279, 358, 375, 643, 736, 799, 967, 1023
Sau96I GGNCC 1 cut(s) 1007
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 2 cut(s) 800, 936
SduI GDGCHC 1 cut(s) 523
SetI ASST 9 cut(s) 301, 454, 556, 639, 665, 681, 754, 1147, 1151
SfaNI GCATC 4 cut(s) 284, 839, 970, 1071
SfcI CTRYAG 1 cut(s) 1056
SinI GGWCC 1 cut(s) 1007
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 9 cut(s) 108, 163, 222, 248, 528, 689, 693, 731, 1123
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 2 cut(s) 292, 322
SspI AATATT 2 cut(s) 318, 466
SspMI CTAG 3 cut(s) 155, 1139, 1150
StuI AGGCCT 1 cut(s) 94
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 5 cut(s) 122, 686, 725, 1057, 1110
TaiI ACGT 2 cut(s) 665, 1147
TaqI TCGA 3 cut(s) 278, 766, 1026
TasI AATT 9 cut(s) 108, 163, 222, 248, 528, 689, 693, 731, 1123
TatI WGTACW 2 cut(s) 303, 1114
TfiI GAWTC 3 cut(s) 493, 746, 860
Tru1I TTAA 6 cut(s) 38, 363, 422, 525, 692, 711
Tru9I TTAA 6 cut(s) 38, 363, 422, 525, 692, 711
TscAI CASTG 3 cut(s) 689, 801, 1060
TseFI GTSAC 2 cut(s) 792, 868
Tsp45I GTSAC 2 cut(s) 792, 868
TspDTI ATGAA 3 cut(s) 359, 425, 458
TspGWI ACGGA 2 cut(s) 406, 1091
TspRI CASTG 3 cut(s) 689, 801, 1060
Van91I CCANNNNNTGG 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 362
VneI GTGCAC 1 cut(s) 519
VpaK11BI GGWCC 1 cut(s) 1007
VspI ATTAAT 1 cut(s) 692
XceI RCATGY 3 cut(s) 79, 461, 992
XspI CTAG 3 cut(s) 155, 1139, 1150
ZrmI AGTACT 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.