pycom17g03180

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010792
Physical Location & Seq
Reverse (-)
2080949 .. 2083193
2245 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2130 bp
ATGCCCGGACTAGCTATGGATGCTATGAATCGAAACGGCGAAGTAGATGAATCAAATGGAGATTATGTGCCTCAAAAGGAAAGCTACAGCCAGCAGGGCTCTCCGAGAAGTACTTTGAGTTCTCGGAGTGGTTCCATCGGTATGGCTATGAATGGCGGGATTGATACCTCTATTGAGCAGCTATATCACAACGTCTGCGAAATGCAGAGCTCGGATCCATCCCCTTCCCGGGCCAGCTTAGGATCGTTTGGTGGGGAATCGAGGATTGATTCCGAGCTAAACCATCTTGTCGGATATGCTCGACAGGATTTGGAGATAAGGAAAGAGGTTGTTGTGAAAAACAAGGAGGAGGGTGTTTGTAGTGACTCAACTCCTGAGAAAGCAAATGTATCGGATGATAAACGGTCTCCAACGAAAGTGAAGTCTCCATCTGCGAAAACAAGTCCGAAGAGCAAATCTCCTAACGAGAAGCCTCTGCATCCGAGAAAAGGCAATGCACTATTGTCGACGAACAAGCTGAGGAGTTTTGTTTTACGCGGCGTGAGGTTTCAGAATGGAGTCGATGATCATCCTCCTGAAGCCGTGTTGGATAACCCTGATCTCGGGCCATATTTGCTCAAGCAAACAAGGGATATGATTGCTTCGGGCGAAAACCCCAAAAAAGCACTTGAGTTAGCTCTCCGTGCAGTGAAATCGTTCGAGAAATGCACTAGTGAGAAGCCTAATTTGGAGTTCGTTATGTGTTTGCATGTTTTGGCAGCAATCTATTGCAGCTTAGAGAAGTACAATGAGGCAATTCCAGTCCTCGAGCGTGCCATTGATATTCCGGCGATAGAGGATGGCGATAACTATGCACTAGCAAAGTTTGCAGGGTGCATGCAATTAGGTGACATTTATGCAATGACTGGTCAGATTGAGAATTCAATTTTGTTCTATACAGCAGGTATGGAAATTCAAAGGCAAGTCTTGGGAGAAAAGGACGCGCGATTGGGTGAGACGTGTCGTTATGTAGCTGAGGCACATGTGCAAGCATTGCAATTCGATGAGGCTGAGAAGCTCTGTCAGATGGCTCTTGAAATCCACCGGGAGAATGGTTCTGCTTCGCTCGAGGAAGCGGCAGATAGAAGACTCATGGGACTGATCTGTGACTCAAAAGGAGATTTCGAAGCTGCTCTTGAGCACTATGTTTTAGCAAGCATGTCAATGTCTGCCAATGATATGGAAGCGGATGCAGCATCAATCGATTGTAGCATTGGAGACGCGTATCTATCTTTGGCGCGGTATGATGAGGCGGTGTTTTCTTACCAGAAAGCACTCACTGTGTTTAAGACAACAAAGGGAGAGACACATCCGACAGTAGCTTCTGTTTACGTTCGTTTAGCTGACTTGTACAACAAGATAGGAATGTTTAAGGAGTCCAAATCATACTGCGAAAATGCACATCGAATTTATGGGAAACCTAGTCCTGGAATCCCCTCAGAAGAGATTGCCAGTGGTCTCATTGATGTTGCTGCAATCTATCAATCCATGAATGATCTGGAACAAGCGCTGAAGTTGCTCAAGAAGGCTTTGAAAATCTTCGGCAATGCTCCGGGCCACCAGAGCACAACTGCAGGAATTGAGGCTCAGATGGGGGTAATGTACTATATGATGGGAAATTACACCGACTCTTACAACACATTCAAGAGTTCCATAACAAAGTTTCGCGCCACGGGAGAAAAGAAATCGGCATTGTTTGGGATTGCGCTGAACCAAATGGGGTTGGCCTGCGTTCAGCGGTTTTCGATCAACGAGGCTGCAGACTTGTTTGAAGAAGCCAGGAACATCTTGGAGAAGGAGTATGGACCTTATCACCCTGACACATTGGGGGTTTACAGTAATTTAGCTGGCACATATGATGCAATGGGCAGGTTGGATGCCGCCATCGAGATTCTGGAGTATGTTGTTGGCATGAGAGAGGAGAAGCTTGGAACAGCAAATCCGGATGTGGCGGACGAGAAGAGGAGGTTGGCGGAGTTGTTGAAAGAAGCCGGCAGGGCTAGGAACCGGAAACCCAGATCGCTGGAGGCACTTCTCGACACCAGCAAAGCCCCACAGATCATAAAACACGACATCATCGAGGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001655 GO:0001822 GO:0001889 GO:0001894 GO:0001895 GO:0001947 GO:0002009 GO:0003006 GO:0003007 GO:0003143 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003341 GO:0003351 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005929 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007368 GO:0007369 GO:0007389 GO:0007507 GO:0008150 GO:0009653 GO:0009790 GO:0009799 GO:0009826 GO:0009855 GO:0009856 GO:0009860 GO:0009887 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030154 GO:0030178 GO:0030323 GO:0030324 GO:0031016 GO:0031347 GO:0032501 GO:0032502 GO:0032989 GO:0035050 GO:0035239 GO:0035295 GO:0035469 GO:0040007 GO:0042592 GO:0042995 GO:0043226 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0044782 GO:0045494 GO:0045595 GO:0045596 GO:0045995 GO:0048468 GO:0048496 GO:0048513 GO:0048519 GO:0048523 GO:0048562 GO:0048565 GO:0048568 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048598 GO:0048729 GO:0048731 GO:0048732 GO:0048856 GO:0048868 GO:0048869 GO:0048871 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051239 GO:0051704 GO:0051960 GO:0055123 GO:0060026 GO:0060027 GO:0060249 GO:0060271 GO:0060287 GO:0060429 GO:0060541 GO:0060560 GO:0060562 GO:0060828 GO:0060993 GO:0061008 GO:0061371 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071907 GO:0071908 GO:0071909 GO:0071910 GO:0071944 GO:0072001 GO:0072189 GO:0072359 GO:0080134 GO:0090090 GO:0090175 GO:0090178 GO:0120025 GO:0120031 GO:0120036 GO:1905276 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095 GO:2000167
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_12 TPR_7 TPR_8

Protein Analysis

710

Amino Acids

77.95

Weight (kDa)

5.36

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 337 - 395 3.9e-07 Tetratricopeptide repeat
TPR_MalT PF17874 377 - 534 7.2e-08 MalT-like TPR region
TPR_NPHP3 PF24885 406 - 540 2.9e-09 Nephrocystin-3 TPR domain
TPR_12 PF13424 411 - 484 1.5e-08 Tetratricopeptide repeat
TPR_12 PF13424 453 - 527 3.1e-10 Tetratricopeptide repeat
TPR_12 PF13424 540 - 612 6.7e-06 Tetratricopeptide repeat
TPR_12 PF13424 581 - 651 1.3e-11 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010792)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27960 AT3G27960 AT3G27960
fragaria_vesca FvH4_6g50730
malus_domestica MD09G1033100.v1.1 MD17G1034400.v1.1
prunus_persica Prupe.3G285200_v2.0.a1 Prupe.3G285200_v2.0.a1
pyrus_communis pycom111g02640 pycom17g03180
rosa_chinensis RchiOBHm_Chr2g0171671
rosa_laevigata RLG00000022027
rosa_multiflora Rmu_ssc0000252.1_g000009
rosa_roxburghii Rroxscaffold_2G00080540
rosa_rugosa Rorug02G0555200
rosa_samantha Rh2AG630200 Rh2BG640700 Rh2BG643200 Rh2CG609000
rosa_wichuraiana Rw2G052150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 932, 1899
AccI GTMKAC 1 cut(s) 506
AccII CGCG 6 cut(s) 537, 983, 985, 1262, 1279, 1707
AccIII TCCGGA 1 cut(s) 1981
AclWI GGATC 3 cut(s) 209, 222, 250
AcsI RAATTY 3 cut(s) 919, 951, 1446
AcuI CTGAAG 2 cut(s) 597, 1571
AfaI GTAC 4 cut(s) 112, 785, 1391, 1643
AfeI AGCGCT 1 cut(s) 1548
AfiI CCNNNNNNNGG 5 cut(s) 228, 229, 488, 602, 1466
AflIII ACRYGT 3 cut(s) 998, 1021, 1260
AgsI TTSAA 7 cut(s) 924, 956, 1076, 1573, 1684, 1811, 2023
AhlI ACTAGT 1 cut(s) 710
AjiI CACGTC 1 cut(s) 999
AjnI CCWGG 2 cut(s) 1465, 1817
AjuI GAANNNNNNNTTGG 4 cut(s) 710, 742, 1991, 2023
AloI GAACNNNNNNTCC 2 cut(s) 1963, 1995
Alw21I GWGCWC 3 cut(s) 212, 1182, 1607
Alw26I GTCTC 6 cut(s) 411, 429, 989, 1251, 1337, 1502
AlwI GGATC 3 cut(s) 209, 222, 250
Ama87I CYCGRG 4 cut(s) 228, 602, 806, 1106
Aor13HI TCCGGA 1 cut(s) 1981
Aor51HI AGCGCT 1 cut(s) 1548
AoxI GGCC 4 cut(s) 231, 605, 1594, 1764
ApeKI GCWGC 7 cut(s) 178, 758, 771, 1169, 1232, 1511, 1796
ApoI RAATTY 3 cut(s) 919, 951, 1446
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp700I GAANNNNTTC 2 cut(s) 695, 1577
AspLEI GCGC 5 cut(s) 985, 1279, 1549, 1709, 1747
AspS9I GGNCC 4 cut(s) 231, 605, 1594, 1844
AsuC2I CCSGG 5 cut(s) 6, 229, 230, 1085, 1593
AsuHPI GGTGA 3 cut(s) 899, 1004, 1844
AsuII TTCGAA 1 cut(s) 1164
AvaI CYCGRG 4 cut(s) 228, 602, 806, 1106
AvaII GGWCC 1 cut(s) 1844
BamHI GGATCC 1 cut(s) 214
BanII GRGCYC 2 cut(s) 101, 212
BbsI GAAGAC 1 cut(s) 1132
Bbv12I GWGCWC 3 cut(s) 212, 1182, 1607
BbvCI CCTCAGC 2 cut(s) 518, 1014
BbvI GCAGC 7 cut(s) 190, 770, 783, 1156, 1244, 1498, 1783
BccI CCATC 9 cut(s) 143, 226, 291, 436, 833, 1060, 1624, 1645, 1931
BceAI ACGGC 2 cut(s) 52, 566
BcgI CGANNNNNNTGC 8 cut(s) 372, 406, 486, 520, 675, 709, 833, 867
BciT130I CCWGG 2 cut(s) 1467, 1819
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 5 cut(s) 6, 229, 230, 1085, 1593
BcoDI GTCTC 6 cut(s) 411, 429, 989, 1251, 1337, 1502
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 5 cut(s) 11, 711, 857, 1461, 2040
BfmI CTRYAG 3 cut(s) 85, 1611, 1797
BfoI RGCGCY 1 cut(s) 1550
BfuAI ACCTGC 2 cut(s) 932, 1899
BglI GCCNNNNNGGC 2 cut(s) 96, 2036
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 7 cut(s) 6, 229, 230, 1085, 1467, 1593, 1819
Bme18I GGWCC 1 cut(s) 1844
BmeT110I CYCGRG 4 cut(s) 228, 602, 806, 1106
BmgBI CACGTC 1 cut(s) 999
BmgT120I GGNCC 4 cut(s) 231, 605, 1594, 1844
BmiI GGNNCC 3 cut(s) 133, 216, 2045
BmrFI CCNGG 7 cut(s) 6, 229, 230, 1085, 1467, 1593, 1819
BmsI GCATC 6 cut(s) 10, 487, 1219, 1244, 1888, 1906
BpiI GAAGAC 1 cut(s) 1132
BplI GAGNNNNNCTC 2 cut(s) 442, 474
BpmI CTGGAG 2 cut(s) 1955, 2084
Bpu10I CCTNAGC 3 cut(s) 238, 518, 1014
Bpu14I TTCGAA 1 cut(s) 1164
BpuEI CTTGAG 4 cut(s) 602, 689, 1196, 1544
BpuMI CCSGG 5 cut(s) 6, 229, 230, 1085, 1593
Bsa29I ATCGAT 1 cut(s) 1242
BsaBI GATNNNNATC 1 cut(s) 567
BsaI GGTCTC 2 cut(s) 411, 1502
BsaJI CCNNGG 2 cut(s) 228, 1710
BsaWI WCCGGW 2 cut(s) 1981, 2046
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 1823, 1853
Bsc4I CCNNNNNNNGG 5 cut(s) 228, 229, 488, 602, 1466
Bse118I RCCGGY 1 cut(s) 2030
Bse1I ACTGG 3 cut(s) 800, 910, 1491
Bse3DI GCAATG 5 cut(s) 499, 906, 1031, 1591, 1908
Bse8I GATNNNNATC 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 1981
BseBI CCWGG 2 cut(s) 1467, 1819
BseCI ATCGAT 1 cut(s) 1242
BseDI CCNNGG 2 cut(s) 228, 1710
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 5 cut(s) 228, 229, 488, 602, 1466
BseMI GCAATG 5 cut(s) 499, 906, 1031, 1591, 1908
BseMII CTCAG 6 cut(s) 366, 509, 1005, 1041, 1491, 1640
BseNI ACTGG 3 cut(s) 800, 910, 1491
BseRI GAGGAG 4 cut(s) 362, 535, 1973, 2017
BseXI GCAGC 7 cut(s) 190, 770, 783, 1156, 1244, 1498, 1783
BsgI GTGCAG 1 cut(s) 705
Bsh1236I CGCG 6 cut(s) 537, 983, 985, 1262, 1279, 1707
BshFI GGCC 4 cut(s) 233, 607, 1596, 1766
BshVI ATCGAT 1 cut(s) 1242
BsiHKAI GWGCWC 3 cut(s) 212, 1182, 1607
BsiHKCI CYCGRG 4 cut(s) 228, 602, 806, 1106
BsiSI CCGG 8 cut(s) 6, 229, 827, 1084, 1592, 1982, 2031, 2047
BslFI GGGAC 1 cut(s) 1149
BslI CCNNNNNNNGG 5 cut(s) 228, 229, 488, 602, 1466
BsmAI GTCTC 6 cut(s) 411, 429, 989, 1251, 1337, 1502
BsmBI CGTCTC 2 cut(s) 989, 1251
BsmFI GGGAC 1 cut(s) 1149
BsnI GGCC 4 cut(s) 233, 607, 1596, 1766
Bso31I GGTCTC 2 cut(s) 411, 1502
BsoBI CYCGRG 4 cut(s) 228, 602, 806, 1106
Bsp119I TTCGAA 1 cut(s) 1164
Bsp1286I GDGCHC 4 cut(s) 101, 212, 1182, 1607
Bsp13I TCCGGA 1 cut(s) 1981
Bsp1407I TGTACA 1 cut(s) 1389
Bsp143I GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
BspANI GGCC 4 cut(s) 233, 607, 1596, 1766
BspCNI CTCAG 6 cut(s) 367, 510, 1006, 1042, 1490, 1639
BspDI ATCGAT 1 cut(s) 1242
BspEI TCCGGA 1 cut(s) 1981
BspFNI CGCG 6 cut(s) 537, 983, 985, 1262, 1279, 1707
BspLI GGNNCC 3 cut(s) 133, 216, 2045
BspMAI CTGCAG 2 cut(s) 1615, 1801
BspMI ACCTGC 2 cut(s) 932, 1899
BspPI GGATC 3 cut(s) 209, 222, 250
BspQI GCTCTTC 1 cut(s) 443
BspT104I TTCGAA 1 cut(s) 1164
BspTNI GGTCTC 2 cut(s) 411, 1502
BsrDI GCAATG 5 cut(s) 499, 906, 1031, 1591, 1908
BsrFI RCCGGY 1 cut(s) 2030
BsrGI TGTACA 1 cut(s) 1389
BsrI ACTGG 3 cut(s) 800, 910, 1491
BssAI RCCGGY 1 cut(s) 2030
BssECI CCNNGG 2 cut(s) 228, 1710
BssMI GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
Bst2UI CCWGG 2 cut(s) 1467, 1819
Bst4CI ACNGT 4 cut(s) 405, 1321, 1357, 1877
Bst6I CTCTTC 3 cut(s) 443, 1476, 1994
BstAPI GCANNNNNTGC 2 cut(s) 866, 1033
BstAUI TGTACA 1 cut(s) 1389
BstBI TTCGAA 1 cut(s) 1164
BstC8I GCNNGC 9 cut(s) 92, 235, 813, 878, 1029, 1195, 1768, 1888, 2032
BstDEI CTNAG 8 cut(s) 238, 375, 518, 775, 1014, 1050, 1477, 1626
BstDSI CCRYGG 1 cut(s) 1710
BstFNI CGCG 6 cut(s) 537, 983, 985, 1262, 1279, 1707
BstH2I RGCGCY 1 cut(s) 1550
BstHHI GCGC 5 cut(s) 985, 1279, 1549, 1709, 1747
BstKTI GATC 9 cut(s) 217, 245, 568, 601, 1143, 1537, 1788, 2060, 2100
BstMAI GTCTC 6 cut(s) 411, 429, 989, 1251, 1337, 1502
BstMBI GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
BstNI CCWGG 2 cut(s) 1467, 1819
BstNSI RCATGY 4 cut(s) 752, 880, 1025, 1201
BstSCI CCNGG 7 cut(s) 4, 227, 228, 1083, 1465, 1591, 1817
BstSFI CTRYAG 3 cut(s) 85, 1611, 1797
BstUI CGCG 6 cut(s) 537, 983, 985, 1262, 1279, 1707
BstV1I GCAGC 7 cut(s) 190, 770, 783, 1156, 1244, 1498, 1783
BstV2I GAAGAC 1 cut(s) 1132
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 3 cut(s) 142, 1219, 2062
BstYI RGATCY 1 cut(s) 214
Bsu15I ATCGAT 1 cut(s) 1242
BsuRI GGCC 4 cut(s) 233, 607, 1596, 1766
BsuTUI ATCGAT 1 cut(s) 1242
BtgI CCRYGG 1 cut(s) 1710
BtrI CACGTC 1 cut(s) 999
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 3 cut(s) 693, 1317, 1498
BveI ACCTGC 2 cut(s) 932, 1899
Cac8I GCNNGC 9 cut(s) 92, 235, 813, 878, 1029, 1195, 1768, 1888, 2032
CfoI GCGC 5 cut(s) 985, 1279, 1549, 1709, 1747
Cfr10I RCCGGY 1 cut(s) 2030
Cfr13I GGNCC 4 cut(s) 231, 605, 1594, 1844
Cfr9I CCCGGG 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 1242
CseI GACGC 2 cut(s) 989, 1268
Csp6I GTAC 4 cut(s) 111, 784, 1390, 1642
CviAII CATG 7 cut(s) 749, 877, 1022, 1132, 1198, 1528, 1951
CviQI GTAC 4 cut(s) 111, 784, 1390, 1642
DdeI CTNAG 8 cut(s) 238, 375, 518, 775, 1014, 1050, 1477, 1626
DpnI GATC 9 cut(s) 216, 244, 567, 600, 1142, 1536, 1787, 2059, 2099
DpnII GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
Eam1104I CTCTTC 3 cut(s) 443, 1476, 1994
EarI CTCTTC 3 cut(s) 443, 1476, 1994
EciI GGCGGA 2 cut(s) 2006, 2027
Ecl136II GAGCTC 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 101, 212
Eco31I GGTCTC 2 cut(s) 411, 1502
Eco47I GGWCC 1 cut(s) 1844
Eco47III AGCGCT 1 cut(s) 1548
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 597, 1571
Eco88I CYCGRG 4 cut(s) 228, 602, 806, 1106
EcoICRI GAGCTC 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 919
EcoRII CCWGG 2 cut(s) 1465, 1817
EcoT38I GRGCYC 2 cut(s) 101, 212
Esp3I CGTCTC 2 cut(s) 989, 1251
FaeI CATG 7 cut(s) 752, 880, 1025, 1135, 1201, 1531, 1954
FalI AAGNNNNNCTT 2 cut(s) 1158, 1190
FaqI GGGAC 1 cut(s) 1149
FatI CATG 7 cut(s) 748, 876, 1021, 1131, 1197, 1527, 1950
FauI CCCGC 1 cut(s) 149
FauNDI CATATG 1 cut(s) 1894
FbaI TGATCA 1 cut(s) 565
FblI GTMKAC 1 cut(s) 506
FriOI GRGCYC 2 cut(s) 101, 212
FspBI CTAG 5 cut(s) 11, 711, 857, 1461, 2040
GlaI GCGC 5 cut(s) 984, 1278, 1548, 1708, 1746
GsuI CTGGAG 2 cut(s) 1955, 2084
HaeII RGCGCY 1 cut(s) 1550
HaeIII GGCC 4 cut(s) 233, 607, 1596, 1766
HapII CCGG 8 cut(s) 6, 229, 827, 1084, 1592, 1982, 2031, 2047
HgaI GACGC 2 cut(s) 989, 1268
HhaI GCGC 5 cut(s) 985, 1279, 1549, 1709, 1747
Hin1II CATG 7 cut(s) 752, 880, 1025, 1135, 1201, 1531, 1954
Hin6I GCGC 5 cut(s) 983, 1277, 1547, 1707, 1745
HinP1I GCGC 5 cut(s) 983, 1277, 1547, 1707, 1745
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HindIII AAGCTT 1 cut(s) 1964
HpaII CCGG 8 cut(s) 6, 229, 827, 1084, 1592, 1982, 2031, 2047
HphI GGTGA 3 cut(s) 899, 1004, 1844
Hpy166II GTNNAC 3 cut(s) 507, 1369, 1873
Hpy8I GTNNAC 3 cut(s) 507, 1369, 1873
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 3 cut(s) 234, 1558, 1828
HpyCH4III ACNGT 4 cut(s) 405, 1321, 1357, 1877
HpyCH4IV ACGT 3 cut(s) 192, 998, 1371
HpyF3I CTNAG 8 cut(s) 238, 375, 518, 775, 1014, 1050, 1477, 1626
HpySE526I ACGT 3 cut(s) 192, 998, 1371
Hsp92II CATG 7 cut(s) 752, 880, 1025, 1135, 1201, 1531, 1954
HspAI GCGC 5 cut(s) 983, 1277, 1547, 1707, 1745
Kpn2I TCCGGA 1 cut(s) 1981
KroI GCCGGC 1 cut(s) 2030
KroNI GCCGGC 1 cut(s) 2032
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 1594
Lsp1109I GCAGC 7 cut(s) 190, 770, 783, 1156, 1244, 1498, 1783
LweI GCATC 6 cut(s) 10, 487, 1219, 1244, 1888, 1906
MaeI CTAG 5 cut(s) 11, 711, 857, 1461, 2040
MaeII ACGT 3 cut(s) 192, 998, 1371
MaeIII GTNAC 3 cut(s) 362, 887, 1145
MalI GATC 9 cut(s) 216, 244, 567, 600, 1142, 1536, 1787, 2059, 2099
MboI GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
MboII GAAGA 6 cut(s) 460, 1137, 1493, 1570, 1823, 2011
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 4 cut(s) 101, 212, 1182, 1607
MluI ACGCGT 1 cut(s) 1260
MlyI GAGTC 6 cut(s) 359, 567, 1122, 1142, 1424, 1661
MmeI TCCRAC 5 cut(s) 271, 434, 567, 1376, 1893
MroI TCCGGA 1 cut(s) 1981
MroNI GCCGGC 1 cut(s) 2030
MroXI GAANNNNTTC 2 cut(s) 695, 1577
MseI TTAA 2 cut(s) 1326, 1410
MslI CAYNNNNRTG 2 cut(s) 140, 1202
MspA1I CMGCKG 1 cut(s) 1777
MspI CCGG 8 cut(s) 6, 229, 827, 1084, 1592, 1982, 2031, 2047
MspR9I CCNGG 7 cut(s) 6, 229, 230, 1085, 1467, 1593, 1819
MvaI CCWGG 2 cut(s) 1467, 1819
MvnI CGCG 6 cut(s) 537, 983, 985, 1262, 1279, 1707
NaeI GCCGGC 1 cut(s) 2032
NciI CCSGG 5 cut(s) 6, 229, 230, 1085, 1593
NdeI CATATG 1 cut(s) 1894
NdeII GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
NgoMIV GCCGGC 1 cut(s) 2030
NlaIII CATG 7 cut(s) 752, 880, 1025, 1135, 1201, 1531, 1954
NlaIV GGNNCC 3 cut(s) 133, 216, 2045
NmuCI GTSAC 3 cut(s) 362, 887, 1145
NspI RCATGY 4 cut(s) 752, 880, 1025, 1201
NspV TTCGAA 1 cut(s) 1164
PaeI GCATGC 1 cut(s) 880
PaeR7I CTCGAG 2 cut(s) 806, 1106
PciI ACATGT 1 cut(s) 1021
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 2115
PdiI GCCGGC 1 cut(s) 2032
PdmI GAANNNNTTC 2 cut(s) 695, 1577
PfeI GAWTC 6 cut(s) 28, 50, 257, 269, 1470, 1930
PfoI TCCNGGA 1 cut(s) 1465
PleI GAGTC 6 cut(s) 359, 566, 1122, 1142, 1423, 1661
PpsI GAGTC 6 cut(s) 359, 566, 1122, 1142, 1423, 1661
PscI ACATGT 1 cut(s) 1021
Psp124BI GAGCTC 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 1465, 1817
PspGI CCWGG 2 cut(s) 1465, 1817
PspN4I GGNNCC 3 cut(s) 133, 216, 2045
PspPI GGNCC 4 cut(s) 231, 605, 1594, 1844
PspXI VCTCGAGB 2 cut(s) 806, 1106
PsrI GAACNNNNNNTAC 2 cut(s) 103, 135
PstI CTGCAG 2 cut(s) 1615, 1801
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 4 cut(s) 112, 785, 1391, 1643
RsaNI GTAC 4 cut(s) 111, 784, 1390, 1642
RseI CAYNNNNRTG 2 cut(s) 140, 1202
SacI GAGCTC 1 cut(s) 212
SalI GTCGAC 1 cut(s) 505
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 1326, 1410
Sau3AI GATC 9 cut(s) 214, 242, 565, 598, 1140, 1534, 1785, 2057, 2097
Sau96I GGNCC 4 cut(s) 231, 605, 1594, 1844
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 6 cut(s) 359, 567, 1122, 1142, 1424, 1661
ScrFI CCNGG 7 cut(s) 6, 229, 230, 1085, 1467, 1593, 1819
SduI GDGCHC 4 cut(s) 101, 212, 1182, 1607
SfaNI GCATC 6 cut(s) 10, 487, 1219, 1244, 1888, 1906
SfcI CTRYAG 3 cut(s) 85, 1611, 1797
Sfr274I CTCGAG 2 cut(s) 806, 1106
SfuI TTCGAA 1 cut(s) 1164
SinI GGWCC 1 cut(s) 1844
SlaI CTCGAG 2 cut(s) 806, 1106
SmaI CCCGGG 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 140, 1202
SmlI CTYRAG 6 cut(s) 617, 668, 806, 1106, 1175, 1559
SmoI CTYRAG 6 cut(s) 617, 668, 806, 1106, 1175, 1559
SpeI ACTAGT 1 cut(s) 710
SphI GCATGC 1 cut(s) 880
SspMI CTAG 5 cut(s) 11, 711, 857, 1461, 2040
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 7 cut(s) 4, 227, 228, 1083, 1465, 1591, 1817
TaaI ACNGT 4 cut(s) 405, 1321, 1357, 1877
TaiI ACGT 3 cut(s) 195, 1001, 1374
TatI WGTACW 4 cut(s) 110, 783, 1389, 1641
TauI GCSGC 3 cut(s) 540, 1118, 1922
TfiI GAWTC 6 cut(s) 28, 50, 257, 269, 1470, 1930
Tru1I TTAA 2 cut(s) 1326, 1410
Tru9I TTAA 2 cut(s) 1326, 1410
TscAI CASTG 3 cut(s) 693, 1324, 1498
TseFI GTSAC 3 cut(s) 362, 887, 1145
TseI GCWGC 7 cut(s) 178, 758, 771, 1169, 1232, 1511, 1796
Tsp45I GTSAC 3 cut(s) 362, 887, 1145
TspDTI ATGAA 4 cut(s) 41, 63, 164, 1544
TspGWI ACGGA 1 cut(s) 671
TspMI CCCGGG 1 cut(s) 228
TspRI CASTG 3 cut(s) 693, 1324, 1498
VpaK11BI GGWCC 1 cut(s) 1844
XapI RAATTY 3 cut(s) 919, 951, 1446
XceI RCATGY 4 cut(s) 752, 880, 1025, 1201
XcmI CCANNNNNNNNNTGG 4 cut(s) 1088, 1534, 1825, 1930
XhoI CTCGAG 2 cut(s) 806, 1106
XmaI CCCGGG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 506
XmnI GAANNNNTTC 2 cut(s) 695, 1577
XspI CTAG 5 cut(s) 11, 711, 857, 1461, 2040
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.