Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007870

Physical Location & Seq

Genomic Coordinates Forward (+)

2099355 .. 2101399

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGAGTAAGGGTGTGATTGTTTCTGCAGTTCGAGCTCTTGCTTCATCAGGAAGCTCAGCATCATCAGCAACTTTCACCAGGCACCTCCATGCATCTGGTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCAAATGAGTATGCAGAATTGAACCCCAATTTTCTGGGTTCTCAGGAGAGAGCTTTGGGGATAAGGGACTGGCTGGAATCACAGGGCCACAAGTATATTGTCACTGATGACAAGGATGGACCAAATAGTGAACTAGAGAAACACATTGAAGATCTTCATGTTCTCATAACAACCCCCTTCCACCCTGCCTATGTCACGGCTGAACGGATCAAAAAGGCGAAGAATTTGCAACTGCTTCTAACAGCCGGAATTGGCTCTGATCACATTGATCTGAAAGCTGCAGCTGCTGCTGGTTTGACAGTGGCAGAGGTCACGGGAAGCAATGTGGTTTCGGTTGCAGAAGACGAGCTCATGAGAATCCTCATTCTCGTCCGCAACTTCGTACCTGGGTATCAGCAGATTGTAACCGGGGAATGGAATGTTGCAGGTATTGCCCACAGAGCTTATGATCTCGAAGGAAAGACAGTGGGGACAGTTGGTGCTGGACGCATTGGCAGGCTTTTGCTCCAAAGGTTGAAGCCTTTCAACTGCAATCTTCTCTATCATGATCGTCTCAAGATTGACCCCGAATTGGAGCAACAGACTGGGGCAAAGTTCGAGGAGGATCTGGATGCAATGCTTCCGAAATGTGATGTTATCGTTGTCAACACACCGCTTACTGAAAAAACAAGAGGACTGTTTGACAAAGAAAGAATTGCGAAGTGTAAGAAGGGAGTCCTGATCGTTAACAATGCTCGTGGGGCAATCATGGACACGCAGGCTGTTGTCGATGCTTGCTCCAGCGGACACATTGCAGGTTACAGTGGTGATGTTTGGAACCCACAACCAGCTCCAAAAGACCATCCATGGCGTTACATGCCAAACCATGCTATGACCCCTCATATATCCGGTACCACAATTGACGCACAGTTGCGTTATGCTGCTGGGACGAAGGATATGCTTGACAGGTACTTCAAGGGAGAAGAATTTCCAGCACAAAACTACATTGTCAAGGACGGTATATTAGCAAGCCAGTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009507 GO:0009536 GO:0009579 GO:0010035 GO:0010038 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00630 ko00680 ko01100 ko01120 ko01200 map00630 map00680 map01100 map01120 map01200

Pfam Domains

Protein Families

2-Hacid_dh 2-Hacid_dh_C

Protein Analysis

386

Amino Acids

42.09

Weight (kDa)

6.9

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh	PF00389	71 - 367	8.7e-16	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2-Hacid_dh_C	PF02826	163 - 341	3.9e-51	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14780 AT5G14780 AT5G14780
fragaria_vesca	FvH4_6g50630
malus_domestica	MD09G1034400.v1.1 MD17G1034800.v1.1
prunus_persica	Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1 Prupe.3G284000_v2.0.a1
pyrus_communis	pycom111g02730 pycom17g03210
rosa_chinensis	RchiOBHm_Chr2g0171431
rosa_laevigata	RLG00000022013
rosa_multiflora	Rmu_sc0007646.1_g000006 Rmu_sc0027265.1_g000001 Rmu_sc0030144.1_g000002
rosa_roxburghii	Rroxscaffold_2G00080660
rosa_rugosa	Rorug02G0554200
rosa_samantha	Rh2AG628500 Rh2CG607600 Rh2DG650000 Rh2DG656000
rosa_wichuraiana	Rw2G052060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	551, 920
Acc65I	GGTACC	1 cut(s)	1025
AccB1I	GGYRCC	2 cut(s)	84, 1025
AciI	CCGC	3 cut(s)	508, 788, 918
AclWI	GGATC	2 cut(s)	350, 747
AcsI	RAATTY	2 cut(s)	358, 1100
AfaI	GTAC	4 cut(s)	519, 1027, 1085, 1151
AfiI	CCNNNNNNNGG	2 cut(s)	549, 706
AgsI	TTSAA	5 cut(s)	157, 284, 652, 661, 1090
AjnI	CCWGG	2 cut(s)	80, 520
AluBI	AGCT	8 cut(s)	38, 57, 188, 413, 419, 484, 578, 965
AluI	AGCT	8 cut(s)	38, 57, 188, 413, 419, 484, 578, 965
Alw21I	GWGCWC	2 cut(s)	40, 486
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	2 cut(s)	350, 747
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	5 cut(s)	413, 416, 419, 422, 1055
ApoI	RAATTY	2 cut(s)	358, 1100
Asp700I	GAANNNNTTC	3 cut(s)	288, 656, 1101
Asp718I	GGTACC	1 cut(s)	1025
AspS9I	GGNCC	2 cut(s)	220, 254
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	70, 953
AvaII	GGWCC	1 cut(s)	254
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BanI	GGYRCC	2 cut(s)	84, 1025
BanII	GRGCYC	2 cut(s)	40, 486
BauI	CACGAG	1 cut(s)	870
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	2 cut(s)	40, 486
BbvI	GCAGC	5 cut(s)	400, 406, 409, 428, 1042
BccI	CCATC	2 cut(s)	245, 984
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	4 cut(s)	343, 377, 1054, 1088
BciT130I	CCWGG	2 cut(s)	82, 522
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	2 cut(s)	27, 414
BfuAI	ACCTGC	2 cut(s)	551, 920
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	5 cut(s)	414, 417, 420, 423, 1056
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	5 cut(s)	415, 418, 421, 424, 1057
Bme1390I	CCNGG	3 cut(s)	82, 522, 544
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	220, 254
BmiI	GGNNCC	3 cut(s)	86, 953, 1027
BmrFI	CCNGG	3 cut(s)	82, 522, 544
BmrI	ACTGGG	1 cut(s)	729
BmsI	GCATC	4 cut(s)	71, 104, 736, 895
BmuI	ACTGGG	1 cut(s)	729
BpiI	GAAGAC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	898
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	674
BpuMI	CCSGG	1 cut(s)	544
BsaJI	CCNNGG	3 cut(s)	521, 543, 980
BsaWI	WCCGGW	1 cut(s)	1022
Bsc4I	CCNNNNNNNGG	2 cut(s)	549, 706
Bse1I	ACTGG	4 cut(s)	209, 724, 1147, 1153
Bse3DI	GCAATG	3 cut(s)	463, 756, 924
BseBI	CCWGG	2 cut(s)	82, 522
BseDI	CCNNGG	3 cut(s)	521, 543, 980
BseGI	GGATG	3 cut(s)	256, 751, 976
BseLI	CCNNNNNNNGG	2 cut(s)	549, 706
BseMI	GCAATG	3 cut(s)	463, 756, 924
BseMII	CTCAG	2 cut(s)	72, 191
BseNI	ACTGG	4 cut(s)	209, 724, 1147, 1153
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	5 cut(s)	400, 406, 409, 428, 1042
BseYI	CCCAGC	1 cut(s)	1058
BshFI	GGCC	1 cut(s)	222
BshNI	GGYRCC	2 cut(s)	84, 1025
BsiHKAI	GWGCWC	2 cut(s)	40, 486
BsiSI	CCGG	3 cut(s)	381, 543, 1023
BslFI	GGGAC	3 cut(s)	215, 619, 1075
BslI	CCNNNNNNNGG	2 cut(s)	549, 706
BsmAI	GTCTC	1 cut(s)	692
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	3 cut(s)	215, 619, 1075
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	40, 486
Bsp143I	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
Bsp1720I	GCTNAGC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	3 cut(s)	508, 788, 918
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	71, 190
BspHI	TCATGA	2 cut(s)	486, 679
BspLI	GGNNCC	3 cut(s)	86, 953, 1027
BspMAI	CTGCAG	2 cut(s)	31, 418
BspMI	ACCTGC	2 cut(s)	551, 920
BspPI	GGATC	2 cut(s)	350, 747
BspT107I	GGYRCC	2 cut(s)	84, 1025
BsrDI	GCAATG	3 cut(s)	463, 756, 924
BsrI	ACTGG	4 cut(s)	209, 724, 1147, 1153
BssECI	CCNNGG	3 cut(s)	521, 543, 980
BssMI	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
BssSI	CACGAG	1 cut(s)	870
BssT1I	CCWWGG	1 cut(s)	980
Bst2BI	CACGAG	1 cut(s)	870
Bst2UI	CCWGG	2 cut(s)	82, 522
Bst4CI	ACNGT	7 cut(s)	436, 601, 610, 813, 938, 1044, 1133
BstAPI	GCANNNNNTGC	2 cut(s)	422, 566
BstC8I	GCNNGC	4 cut(s)	632, 894, 910, 1144
BstDEI	CTNAG	2 cut(s)	58, 177
BstDSI	CCRYGG	1 cut(s)	980
BstF5I	GGATG	3 cut(s)	256, 751, 976
BstKTI	GATC	8 cut(s)	289, 345, 397, 406, 586, 685, 742, 858
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 68, 419, 422, 566, 575, 875, 991
BstNI	CCWGG	2 cut(s)	82, 522
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	3 cut(s)	80, 520, 542
BstSFI	CTRYAG	2 cut(s)	27, 414
BstV1I	GCAGC	5 cut(s)	400, 406, 409, 428, 1042
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	286, 739
BstXI	CCANNNNNNTGG	2 cut(s)	98, 169
BstYI	RGATCY	2 cut(s)	286, 739
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	980
BtsCI	GGATG	3 cut(s)	256, 751, 976
BtsIMutI	CAGTG	4 cut(s)	237, 441, 606, 943
BveI	ACCTGC	2 cut(s)	551, 920
Cac8I	GCNNGC	4 cut(s)	632, 894, 910, 1144
CaiI	CAGNNNCTG	1 cut(s)	422
CciI	TCATGA	2 cut(s)	486, 679
Cfr13I	GGNCC	2 cut(s)	220, 254
CseI	GACGC	2 cut(s)	630, 1046
Csp6I	GTAC	4 cut(s)	518, 1026, 1084, 1150
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviAII	CATG	8 cut(s)	92, 293, 487, 680, 883, 981, 991, 1001
CviQI	GTAC	4 cut(s)	518, 1026, 1084, 1150
DdeI	CTNAG	2 cut(s)	58, 177
DpnI	GATC	8 cut(s)	288, 344, 396, 405, 585, 684, 741, 857
DpnII	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
Ecl136II	GAGCTC	2 cut(s)	38, 484
Eco130I	CCWWGG	1 cut(s)	980
Eco24I	GRGCYC	2 cut(s)	40, 486
Eco47I	GGWCC	1 cut(s)	254
Eco53kI	GAGCTC	2 cut(s)	38, 484
EcoICRI	GAGCTC	2 cut(s)	38, 484
EcoRII	CCWGG	2 cut(s)	80, 520
EcoT14I	CCWWGG	1 cut(s)	980
EcoT22I	ATGCAT	1 cut(s)	97
EcoT38I	GRGCYC	2 cut(s)	40, 486
ErhI	CCWWGG	1 cut(s)	980
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	8 cut(s)	95, 296, 490, 683, 886, 984, 994, 1004
FaqI	GGGAC	3 cut(s)	215, 619, 1075
FatI	CATG	8 cut(s)	91, 292, 486, 679, 882, 980, 990, 1000
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	5 cut(s)	414, 417, 420, 423, 1056
FokI	GGATG	3 cut(s)	263, 758, 963
FriOI	GRGCYC	2 cut(s)	40, 486
Fsp4HI	GCNGC	5 cut(s)	414, 417, 420, 423, 1056
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	5 cut(s)	414, 417, 420, 423, 1056
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	1 cut(s)	898
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	3 cut(s)	381, 543, 1023
HgaI	GACGC	2 cut(s)	630, 1046
Hin1II	CATG	8 cut(s)	95, 296, 490, 683, 886, 984, 994, 1004
HincII	GTYRAC	2 cut(s)	781, 862
HindII	GTYRAC	2 cut(s)	781, 862
HinfI	GANTC	3 cut(s)	212, 492, 849
HpaI	GTTAAC	1 cut(s)	862
HpaII	CCGG	3 cut(s)	381, 543, 1023
HphI	GGTGA	2 cut(s)	70, 953
Hpy166II	GTNNAC	3 cut(s)	266, 781, 862
Hpy188I	TCNGA	3 cut(s)	394, 408, 759
Hpy188III	TCNNGA	8 cut(s)	51, 179, 487, 587, 680, 691, 743, 853
Hpy8I	GTNNAC	3 cut(s)	266, 781, 862
HpyAV	CCTTC	4 cut(s)	322, 584, 838, 1060
HpyCH4III	ACNGT	7 cut(s)	436, 601, 610, 813, 938, 1044, 1133
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 68, 419, 422, 566, 575, 875, 991
HpyF3I	CTNAG	2 cut(s)	58, 177
Hsp92II	CATG	8 cut(s)	95, 296, 490, 683, 886, 984, 994, 1004
KpnI	GGTACC	1 cut(s)	1029
Ksp22I	TGATCA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	862
Kzo9I	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
LmnI	GCTCC	4 cut(s)	645, 709, 917, 970
Lsp1109I	GCAGC	5 cut(s)	400, 406, 409, 428, 1042
LweI	GCATC	4 cut(s)	71, 104, 736, 895
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	6 cut(s)	235, 328, 445, 538, 932, 986
MalI	GATC	8 cut(s)	288, 344, 396, 405, 585, 684, 741, 857
MboI	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
MboII	GAAGA	6 cut(s)	281, 296, 367, 488, 662, 1109
MfeI	CAATTG	1 cut(s)	1032
MflI	RGATCY	2 cut(s)	286, 739
MhlI	GDGCHC	2 cut(s)	40, 486
MluCI	AATT	8 cut(s)	152, 163, 358, 384, 704, 828, 1032, 1100
MlyI	GAGTC	1 cut(s)	858
MnlI	CCTC	7 cut(s)	98, 436, 506, 727, 730, 800, 1023
Mph1103I	ATGCAT	1 cut(s)	97
MroXI	GAANNNNTTC	3 cut(s)	288, 656, 1101
MseI	TTAA	1 cut(s)	861
MslI	CAYNNNNRTG	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	419, 918
MspI	CCGG	3 cut(s)	381, 543, 1023
MspR9I	CCNGG	3 cut(s)	82, 522, 544
MunI	CAATTG	1 cut(s)	1032
MvaI	CCWGG	2 cut(s)	82, 522
MwoI	GCNNNNNNNGC	8 cut(s)	35, 68, 419, 422, 566, 575, 875, 991
NciI	CCSGG	1 cut(s)	544
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
NlaIII	CATG	8 cut(s)	95, 296, 490, 683, 886, 984, 994, 1004
NlaIV	GGNNCC	3 cut(s)	86, 953, 1027
NmuCI	GTSAC	3 cut(s)	235, 328, 445
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	994
PagI	TCATGA	2 cut(s)	486, 679
PdmI	GAANNNNTTC	3 cut(s)	288, 656, 1101
PfeI	GAWTC	2 cut(s)	212, 492
PkrI	GCNGC	5 cut(s)	415, 418, 421, 424, 1057
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
Psp124BI	GAGCTC	2 cut(s)	40, 486
Psp6I	CCWGG	2 cut(s)	80, 520
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	2 cut(s)	80, 520
PspN4I	GGNNCC	3 cut(s)	86, 953, 1027
PspPI	GGNCC	2 cut(s)	220, 254
PstI	CTGCAG	2 cut(s)	31, 418
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	286, 739
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	4 cut(s)	519, 1027, 1085, 1151
RsaNI	GTAC	4 cut(s)	518, 1026, 1084, 1150
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	2 cut(s)	40, 486
SaqAI	TTAA	1 cut(s)	861
SatI	GCNGC	5 cut(s)	414, 417, 420, 423, 1056
Sau3AI	GATC	8 cut(s)	286, 342, 394, 403, 583, 682, 739, 855
Sau96I	GGNCC	2 cut(s)	220, 254
SchI	GAGTC	1 cut(s)	858
ScrFI	CCNGG	3 cut(s)	82, 522, 544
SduI	GDGCHC	2 cut(s)	40, 486
SfaNI	GCATC	4 cut(s)	71, 104, 736, 895
SfcI	CTRYAG	2 cut(s)	27, 414
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	8 cut(s)	152, 163, 358, 384, 704, 828, 1032, 1100
SsiI	CCGC	3 cut(s)	508, 788, 918
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	2 cut(s)	40, 486
StyD4I	CCNGG	3 cut(s)	80, 520, 542
StyI	CCWWGG	1 cut(s)	980
TaaI	ACNGT	7 cut(s)	436, 601, 610, 813, 938, 1044, 1133
TaqI	TCGA	4 cut(s)	34, 588, 732, 903
TasI	AATT	8 cut(s)	152, 163, 358, 384, 704, 828, 1032, 1100
TfiI	GAWTC	2 cut(s)	212, 492
Tru1I	TTAA	1 cut(s)	861
Tru9I	TTAA	1 cut(s)	861
TscAI	CASTG	4 cut(s)	244, 441, 606, 943
TseFI	GTSAC	3 cut(s)	235, 328, 445
TseI	GCWGC	5 cut(s)	413, 416, 419, 422, 1055
Tsp45I	GTSAC	3 cut(s)	235, 328, 445
TspDTI	ATGAA	2 cut(s)	36, 281
TspGWI	ACGGA	1 cut(s)	355
TspRI	CASTG	4 cut(s)	244, 441, 606, 943
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	2 cut(s)	358, 1100
XceI	RCATGY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmnI	GAANNNNTTC	3 cut(s)	288, 656, 1101
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.