Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010099

Physical Location & Seq

Genomic Coordinates Forward (+)

2575189 .. 2579351

Gene Structure 4163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3510 bp

ATGGCTTTCTCGTCGTACATTGGCAGCACCCGCCGCGGCGGCTGGGCCAACTCCCTCCTCCCTTCCTCCTCCGCTTCCAACCCCAAATCCAAGCTCACCAGAAAGCCCCGCAGGCGATTACCCCTCCGCGACTTCATCTTCGCAAACTTCTTCGTTATCGGCATCTCGATCTCCCTCTTCTTCTTCCTCATTATCTTCCTCCGCTACGGCGTCCCCACACCCCTCTCCTCCCACTTCAAATCCAAATCCCCCGCCCGCTTCTCCAAGCCCCGAAAGCCCGTTTCCCGCAAGACCGTCTCGGCCGCCGATTCGGGCGCCGACGCCGATGCGGGGGCCACCGTCGACCTCACCACCAAGGACCTGTACGACAAGATTAACTTCTCGGATGTGGACGGCGGGCCGTGGAAGCAGGGGTGGCGGGTGAGCTACAAAGGGGACGAGTGGGACTCTGAGAAATTGAAGGTGATCGTGGTGCCCCATTCGCATAATCTGGATCGATCCCGGCTGGAAGCTCACGGTGGAAGAGTACTACGATGTGCAATCCAGACATATTCTCGACACCATTGTCGATACGCTTTCGAAGTAATTGATTCTCGGCGCAAGTTTATATGGGAAGAGATGTCTTATCTGGAAAGATGGTGGAGAGACGCCTCTGATCACAAAAGGGAGTCATTCACCAATTTGGTGAAAAATGGTCAGCTCGAAATTGTTGGAGGTGGCTGGGTAATGAACGATGAGGCTAATTCACATTATTATGCCATAATTGAGCAGATGACAGAAGGAAATATGTGGTTGAACGAAACTGTTGGGGTTATTCCTAAAAATGCTTGGGCGATAGATCGATCTGGATACTCACCTACCATGGCATATCTTCTCCGTCGCATGGGTTTTGAAAATATGCTTATTCAGAGGACCCATTATGAGCTGAAGAAGGAACTTGCACTGCATAAAAATTTGGAGTATATATGGCGTCAGATCTGGGATGTGGATGAAACTACCGATATTTTTGTCCACATGATGCCTTTTTATTCTTATGATATTCCACATACTTGTGGGCCAGAGCCTGCTATTTGTTGTCAGTTTGACTTTGCTCGAATGCGTGGCTTTGATTATGAACTCTGTCCATGGGGAGACGATCCAGTAGAGACCAACCAGGGAAATGTTCAGGAGCGGGCACTTATTCTACTAGATCAATATAAGAAGAAATCAACACTGTACAGGACAAATACACTTCTTATTCCTCTTGGAGATGATTTCCGCTACATAAGCATCGATGAAGCTGAAGCTCAGTTTAGGAACTACCAAATGTTGTTTGATTATATCAATTCTAATCCCAGTTTAAACACAGAGGCCAAGTTTGGAACTCTGGAAGATTACTTTTGGACCCTTCGTGAGGAGGCTGAAAGAATAAATCATTCACTTCCTGGTGAGATTGGTTCCTTTCAGGTTGGGGGTTTTCCTTCTTTGTCAGGTGACTTCTTCACTTATGCTGATAGGCAACAGGACTATTGGAGTGGCTATTATGTTTCCAGGCCTTTCTTCAAGGCTGTTGATCGAGTTCTCGAGCAGACAATTCGTACCACAGAGATGATGATTGCTTTCCTGCTTGGGTACTGCCAGAAACCACAATGTGAAAAGTTGCCCATGGGGTTCTCCTACAAGTTGGCAGCTGCTAGGAGGAACTTAGCTCTTTTCCAGCATCACGATGGAGTGACTGGTTCTGCTAAAGATCATGTGGTCGTGGACTATGGGACTCGGATGCACACATCTTTGCAGGACTTGCAGATTTTCATGTCTAAAGCTATTGAAGTACTGCTCGGAATGCGCCATGAGAAAAATGAGAATAACCCATCTCAGTTTGAGCCAGAACAGGTGAGATCTAAATATGATGTTCAGCCTGTTCATAGAGCAATCATGGCCCGTGAAGGAACTAGACGGTCGGTGGTGTTTTTTAATCCTTTGGAGCAGACAAGAGAAGAGGTTGTGATGGTTATTGTTAACCGTCCAGATGTTACTGTTCTAGACTCAAACTGGACATGTGTTCAAAGCCAAATATCCCCTGAGCTTCAGCATGATAAAAGCAAAACTTTTACCGGAAGGCACCGTGTCTACTGGCAGGCTTCTGTTCCTGCATTGGGGTTGCAAACATATTACATTGTTAATGGTTTTGTTGGATGCGAAAAGGCCAAACCAGCAAAACTAAAATTTTTCTCAAAGTCTGGTTCTTTATCTTGTCCCATTCCATATGCTTGCTCAAAACCAGACGCTGATGTGGCTGAAATCCAGAACAGGAACCAAATACTCACCTTTGATATGAAGCATGGCTTGCTGCAGAAAATAAGCTATAAGAATGGTTCGCAAAATGTTGCGGGTGAGGAAATAGCTATGTACTCTAGCTCGGGTAGTGGAGCCTACCTATTTAAACCCAAAGGTGATGCCCAGCCTATCATCGAAGAAGGTGGGCAGTTGGTGATCTCTGAGGGCCCTTTGGTGCAGGAAGTTTACTCTTATCCAAGGACTGCATGGGAGAAGAGCCCCATTTCTCATAGCACCCGTATCTACAATGGGGAGAATACTGTACAGGAATTTCTCATTGAGAAGGAGTATCATGTTGAGCTTCTCGGCCAGGAGTTTGATGACAAGGAGTTGATAGTTAGGTATAAAACAGATGTTGATAACAAAAGGATATTCTTTTCTGATTTAAATGGCTTTCAGATGAGCCGGAGAGAAACCTATGATAAAATCCCAGTTCAGGGCAATTATTACCCTATGCCCGCTCTTGCGTTCATGCAGGGCTCCAATGGTCAGCGGTTTTCAGTCCATTCCCGGCAGTCGTTGGGTGTTGCAAGTCTTAAAAATGGATGGTTGGAGATTATGCTTGACCGTCGTTTGGTAAGAGATGATGGACGAGGTCTTGGACAAGGAGTGATGGACAACCGTGCTATGAATGTAATCTTCCACATCGTTGTGGAGTCTAACATTTCAGCCACATCAAACCCAGTTTCCAACCCATTGCCCTTGAACCCCTCTCTTCTTTCTCACCGTGTCAGTGCTCACCTGAACTATCCGTTGCATGCATTCATTGACAAGAAGCCAGAGGAGTTAACAGTGCAGCCACCCCCAAGATCTTTCTCCCCCTTAGCCGCTTCCTTACCATGTGATCTGCATATTGTAAGTTTTAAGGTTCCCCAACCACTAAAACACACTCAGCAACCTCTCGGAGATTCTAGGTTTGCGCTACTTTTACAGAGACAGAACTGGGACTCTTCATATTGTCGGAAGGGCAGATCAGGGTGCACTAGATTTGCTGATGAGACTGTGAATCTCTTTTACATGTTCAAAGACCTTGCGGTATTTAATGCAAGAGCTACTTCCTTAAATCTTTTACATGAGGACATGGATATGCTTGGGTATACCGATCAATTTGGAGATGTTGCTCAAGACGGACACGTTCTTATGTCTCCAATGGAAATACAGGCTTACAAGTTGGAATTGCGGCCGCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1170

Amino Acids

133.96

Weight (kDa)

7.61

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	154 - 496	2.7e-66	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	503 - 605	3.2e-20	Alpha mannosidase middle domain
Glyco_hydro_38C	PF07748	761 - 970	2.2e-30	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14950
fragaria_vesca	FvH4_6g49910 FvH4_6g49910
malus_domestica	MD09G1040900.v1.1 MD17G1042200.v1.1
prunus_persica	Prupe.3G276800_v2.0.a1
pyrus_communis	pycom111g03190 pycom17g03770
rosa_chinensis	RchiOBHm_Chr2g0170081
rosa_laevigata	RLG00000021920
rosa_multiflora	Rmu_co8321257.1_g000001 Rmu_sc0013078.1_g000007 Rmu_sc0013453.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081600
rosa_rugosa	Rorug02G0545500 Rorug02G0545600.1
rosa_samantha	Rh2AG617700 Rh2BG629200 Rh2CG598600 Rh2DG641000
rosa_wichuraiana	Rw2G051140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	564
AccB1I	GGYRCC	3 cut(s)	314, 472, 2100
AccBSI	CCGCTC	2 cut(s)	1171, 2777
AccI	GTMKAC	3 cut(s)	342, 2109, 3413
AccII	CGCG	2 cut(s)	36, 129
AclWI	GGATC	3 cut(s)	492, 501, 1130
AcoI	YGGCCR	3 cut(s)	300, 2623, 3497
AcsI	RAATTY	3 cut(s)	952, 2204, 2585
AcuI	CTGAAG	3 cut(s)	947, 1302, 2051
AcyI	GRCGYC	5 cut(s)	210, 315, 321, 648, 970
AdeI	CACNNNGTG	1 cut(s)	1631
AfaI	GTAC	9 cut(s)	17, 365, 528, 1217, 1579, 1613, 1812, 2390, 2580
AfiI	CCNNNNNNNGG	7 cut(s)	330, 883, 1393, 2135, 2752, 2753, 2890
AflIII	ACRYGT	3 cut(s)	2036, 3333, 3448
AgsI	TTSAA	9 cut(s)	238, 460, 796, 893, 1543, 1808, 2045, 3022, 3340
AjnI	CCWGG	4 cut(s)	1152, 1423, 1529, 2625
Alw21I	GWGCWC	2 cut(s)	3055, 3299
Alw26I	GTCTC	7 cut(s)	301, 639, 1125, 1139, 3244, 3308, 3465
Alw44I	GTGCAC	1 cut(s)	3295
AlwI	GGATC	3 cut(s)	492, 501, 1130
AlwNI	CAGNNNCTG	2 cut(s)	1064, 2267
Ama87I	CYCGRG	2 cut(s)	1562, 2398
ApaI	GGGCCC	1 cut(s)	2486
ApaLI	GTGCAC	1 cut(s)	3295
ApeKI	GCWGC	5 cut(s)	24, 1667, 1670, 2329, 3112
ApoI	RAATTY	3 cut(s)	952, 2204, 2585
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspLEI	GCGC	4 cut(s)	317, 600, 1827, 3238
AsuC2I	CCSGG	2 cut(s)	502, 2827
AsuII	TTCGAA	1 cut(s)	579
AvaI	CYCGRG	2 cut(s)	1562, 2398
AvaII	GGWCC	3 cut(s)	358, 912, 1383
BaeGI	GKGCMC	4 cut(s)	477, 1177, 2486, 3299
BanI	GGYRCC	3 cut(s)	314, 472, 2100
BanII	GRGCYC	3 cut(s)	2486, 2537, 2798
Bbv12I	GWGCWC	2 cut(s)	3055, 3299
BbvI	GCAGC	5 cut(s)	36, 1657, 1679, 2316, 3124
BccI	CCATC	7 cut(s)	630, 1700, 1858, 1981, 2856, 2897, 2923
BceAI	ACGGC	3 cut(s)	223, 385, 409
BcgI	CGANNNNNNTGC	4 cut(s)	308, 342, 1556, 1590
BciT130I	CCWGG	4 cut(s)	1154, 1425, 1531, 2627
BciVI	GTATCC	1 cut(s)	842
BclI	TGATCA	1 cut(s)	655
BcnI	CCSGG	2 cut(s)	502, 2827
BcoDI	GTCTC	7 cut(s)	301, 639, 1125, 1139, 3244, 3308, 3465
BfaI	CTAG	7 cut(s)	1187, 1674, 1932, 2021, 2394, 3228, 3300
BfmI	CTRYAG	1 cut(s)	2330
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	1 cut(s)	842
BglI	GCCNNNNNGGC	2 cut(s)	39, 112
BglII	AGATCT	3 cut(s)	975, 1877, 3125
BmcAI	AGTACT	2 cut(s)	528, 1812
Bme1390I	CCNGG	6 cut(s)	502, 1154, 1425, 1531, 2627, 2827
Bme18I	GGWCC	3 cut(s)	358, 912, 1383
BmeT110I	CYCGRG	2 cut(s)	1562, 2398
BmrFI	CCNGG	6 cut(s)	502, 1154, 1425, 1531, 2627, 2827
BmrI	ACTGGG	4 cut(s)	1329, 2741, 2993, 3268
BmsI	GCATC	8 cut(s)	171, 316, 1008, 1278, 1708, 1749, 2165, 2425
BmuI	ACTGGG	4 cut(s)	1329, 2741, 2993, 3268
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
Bpu10I	CCTNAGC	2 cut(s)	2061, 3139
Bpu14I	TTCGAA	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	3423
BpuMI	CCSGG	2 cut(s)	502, 2827
Bsa29I	ATCGAT	3 cut(s)	496, 841, 1272
BsaHI	GRCGYC	5 cut(s)	210, 315, 321, 648, 970
BsaI	GGTCTC	1 cut(s)	1139
BsaJI	CCNNGG	8 cut(s)	34, 354, 401, 861, 1124, 1153, 1644, 2513
BsaWI	WCCGGW	1 cut(s)	2093
Bsc4I	CCNNNNNNNGG	7 cut(s)	330, 883, 1393, 2135, 2752, 2753, 2890
Bse1I	ACTGG	8 cut(s)	1139, 1335, 1720, 2036, 2117, 2747, 2999, 3263
Bse3DI	GCAATG	1 cut(s)	3011
BseBI	CCWGG	4 cut(s)	1154, 1425, 1531, 2627
BseCI	ATCGAT	3 cut(s)	496, 841, 1272
BseDI	CCNNGG	8 cut(s)	34, 354, 401, 861, 1124, 1153, 1644, 2513
BseGI	GGATG	6 cut(s)	391, 988, 994, 1764, 2180, 2867
BseLI	CCNNNNNNNGG	7 cut(s)	330, 883, 1393, 2135, 2752, 2753, 2890
BseMI	GCAATG	1 cut(s)	3011
BseMII	CTCAG	6 cut(s)	441, 1301, 1868, 2052, 2469, 3221
BseNI	ACTGG	8 cut(s)	1139, 1335, 1720, 2036, 2117, 2747, 2999, 3263
BseRI	GAGGAG	5 cut(s)	47, 58, 217, 1409, 3113
BseSI	GKGCMC	4 cut(s)	477, 1177, 2486, 3299
BseX3I	CGGCCG	2 cut(s)	300, 3497
BseXI	GCAGC	5 cut(s)	36, 1657, 1679, 2316, 3124
BseYI	CCCAGC	3 cut(s)	42, 720, 2439
BsgI	GTGCAG	2 cut(s)	2513, 3131
Bsh1236I	CGCG	2 cut(s)	36, 129
Bsh1285I	CGRYCG	3 cut(s)	303, 1940, 3500
BshNI	GGYRCC	3 cut(s)	314, 472, 2100
BshVI	ATCGAT	3 cut(s)	496, 841, 1272
BsiEI	CGRYCG	3 cut(s)	303, 1940, 3500
BsiHKAI	GWGCWC	2 cut(s)	3055, 3299
BsiHKCI	CYCGRG	2 cut(s)	1562, 2398
BsiSI	CCGG	4 cut(s)	502, 2094, 2722, 2827
BslFI	GGGAC	6 cut(s)	197, 449, 458, 1765, 2220, 3275
BslI	CCNNNNNNNGG	7 cut(s)	330, 883, 1393, 2135, 2752, 2753, 2890
BsmAI	GTCTC	7 cut(s)	301, 639, 1125, 1139, 3244, 3308, 3465
BsmBI	CGTCTC	3 cut(s)	301, 639, 1125
BsmFI	GGGAC	6 cut(s)	197, 449, 458, 1765, 2220, 3275
BsmI	GAATGC	3 cut(s)	1101, 1827, 3077
Bso31I	GGTCTC	1 cut(s)	1139
BsoBI	CYCGRG	2 cut(s)	1562, 2398
Bsp119I	TTCGAA	1 cut(s)	579
Bsp120I	GGGCCC	1 cut(s)	2482
Bsp1286I	GDGCHC	7 cut(s)	477, 1177, 2486, 2537, 2798, 3055, 3299
Bsp1407I	TGTACA	2 cut(s)	1215, 2578
Bsp19I	CCATGG	3 cut(s)	861, 1124, 1644
BspCNI	CTCAG	6 cut(s)	442, 1300, 1867, 2053, 2470, 3220
BspDI	ATCGAT	3 cut(s)	496, 841, 1272
BspFNI	CGCG	2 cut(s)	36, 129
BspMAI	CTGCAG	1 cut(s)	2334
BspPI	GGATC	3 cut(s)	492, 501, 1130
BspQI	GCTCTTC	1 cut(s)	2525
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	3 cut(s)	314, 472, 2100
BspTNI	GGTCTC	1 cut(s)	1139
BsrBI	CCGCTC	2 cut(s)	1171, 2777
BsrDI	GCAATG	1 cut(s)	3011
BsrGI	TGTACA	2 cut(s)	1215, 2578
BsrI	ACTGG	8 cut(s)	1139, 1335, 1720, 2036, 2117, 2747, 2999, 3263
BssECI	CCNNGG	8 cut(s)	34, 354, 401, 861, 1124, 1153, 1644, 2513
BssNAI	GTATAC	1 cut(s)	3414
BssNI	GRCGYC	5 cut(s)	210, 315, 321, 648, 970
BssT1I	CCWWGG	5 cut(s)	354, 861, 1124, 1644, 2513
Bst1107I	GTATAC	1 cut(s)	3414
Bst2UI	CCWGG	4 cut(s)	1154, 1425, 1531, 2627
Bst6I	CTCTTC	7 cut(s)	182, 517, 609, 1971, 2525, 3036, 3271
BstACI	GRCGYC	5 cut(s)	210, 315, 321, 648, 970
BstAPI	GCANNNNNTGC	2 cut(s)	1780, 2326
BstAUI	TGTACA	2 cut(s)	1215, 2578
BstBI	TTCGAA	1 cut(s)	579
BstDEI	CTNAG	8 cut(s)	450, 1287, 1684, 1854, 2061, 2478, 3139, 3207
BstDSI	CCRYGG	5 cut(s)	34, 401, 861, 1124, 1644
BstENI	CCTNNNNNAGG	1 cut(s)	1391
BstF5I	GGATG	6 cut(s)	391, 988, 994, 1764, 2180, 2867
BstFNI	CGCG	2 cut(s)	36, 129
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	4 cut(s)	317, 600, 1827, 3238
BstMAI	GTCTC	7 cut(s)	301, 639, 1125, 1139, 3244, 3308, 3465
BstMCI	CGRYCG	3 cut(s)	303, 1940, 3500
BstNI	CCWGG	4 cut(s)	1154, 1425, 1531, 2627
BstNSI	RCATGY	3 cut(s)	2040, 3077, 3337
BstSCI	CCNGG	6 cut(s)	500, 1152, 1423, 1529, 2625, 2825
BstSFI	CTRYAG	1 cut(s)	2330
BstSLI	GKGCMC	4 cut(s)	477, 1177, 2486, 3299
BstUI	CGCG	2 cut(s)	36, 129
BstV1I	GCAGC	5 cut(s)	36, 1657, 1679, 2316, 3124
BstX2I	RGATCY	3 cut(s)	975, 1877, 3125
BstYI	RGATCY	3 cut(s)	975, 1877, 3125
BstZ17I	GTATAC	1 cut(s)	3414
BstZI	CGGCCG	2 cut(s)	300, 3497
Bsu15I	ATCGAT	3 cut(s)	496, 841, 1272
BsuI	GTATCC	1 cut(s)	842
BsuTUI	ATCGAT	3 cut(s)	496, 841, 1272
BtgI	CCRYGG	5 cut(s)	34, 401, 861, 1124, 1644
BtsCI	GGATG	6 cut(s)	391, 988, 994, 1764, 2180, 2867
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	4 cut(s)	941, 1211, 3055, 3114
CaiI	CAGNNNCTG	2 cut(s)	1064, 2267
CciNI	GCGGCCGC	1 cut(s)	3497
CfoI	GCGC	4 cut(s)	317, 600, 1827, 3238
Cfr42I	CCGCGG	1 cut(s)	37
ClaI	ATCGAT	3 cut(s)	496, 841, 1272
CseI	GACGC	5 cut(s)	199, 329, 656, 959, 2273
Csp6I	GTAC	9 cut(s)	16, 364, 527, 1216, 1578, 1612, 1811, 2389, 2579
CviQI	GTAC	9 cut(s)	16, 364, 527, 1216, 1578, 1612, 1811, 2389, 2579
DdeI	CTNAG	8 cut(s)	450, 1287, 1684, 1854, 2061, 2478, 3139, 3207
DinI	GGCGCC	1 cut(s)	316
DraI	TTTAAA	3 cut(s)	1341, 2422, 2703
DraIII	CACNNNGTG	1 cut(s)	1631
DrdI	GACNNNNNNGTC	1 cut(s)	564
DseDI	GACNNNNNNGTC	1 cut(s)	564
EaeI	YGGCCR	3 cut(s)	300, 2623, 3497
EagI	CGGCCG	2 cut(s)	300, 3497
Eam1104I	CTCTTC	7 cut(s)	182, 517, 609, 1971, 2525, 3036, 3271
EarI	CTCTTC	7 cut(s)	182, 517, 609, 1971, 2525, 3036, 3271
EclXI	CGGCCG	2 cut(s)	300, 3497
Eco130I	CCWWGG	5 cut(s)	354, 861, 1124, 1644, 2513
Eco147I	AGGCCT	1 cut(s)	1534
Eco24I	GRGCYC	3 cut(s)	2486, 2537, 2798
Eco31I	GGTCTC	1 cut(s)	1139
Eco47I	GGWCC	3 cut(s)	358, 912, 1383
Eco52I	CGGCCG	2 cut(s)	300, 3497
Eco57I	CTGAAG	3 cut(s)	947, 1302, 2051
Eco88I	CYCGRG	2 cut(s)	1562, 2398
EcoNI	CCTNNNNNAGG	1 cut(s)	1391
EcoO109I	RGGNCCY	4 cut(s)	358, 912, 2482, 2483
EcoRII	CCWGG	4 cut(s)	1152, 1423, 1529, 2625
EcoT14I	CCWWGG	5 cut(s)	354, 861, 1124, 1644, 2513
EcoT22I	ATGCAT	1 cut(s)	3079
EcoT38I	GRGCYC	3 cut(s)	2486, 2537, 2798
EgeI	GGCGCC	1 cut(s)	316
EheI	GGCGCC	1 cut(s)	316
ErhI	CCWWGG	5 cut(s)	354, 861, 1124, 1644, 2513
Esp3I	CGTCTC	3 cut(s)	301, 639, 1125
FalI	AAGNNNNNCTT	8 cut(s)	362, 394, 2071, 2103, 2309, 2341, 3355, 3387
FaqI	GGGAC	6 cut(s)	197, 449, 458, 1765, 2220, 3275
FauNDI	CATATG	1 cut(s)	2245
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	3 cut(s)	342, 2109, 3413
FokI	GGATG	6 cut(s)	398, 995, 1001, 1771, 2187, 2874
FriOI	GRGCYC	3 cut(s)	2486, 2537, 2798
FspBI	CTAG	7 cut(s)	1187, 1674, 1932, 2021, 2394, 3228, 3300
GlaI	GCGC	4 cut(s)	316, 599, 1826, 3237
GsaI	CCCAGC	3 cut(s)	46, 724, 2443
HaeII	RGCGCY	1 cut(s)	318
HapII	CCGG	4 cut(s)	502, 2094, 2722, 2827
HgaI	GACGC	5 cut(s)	199, 329, 656, 959, 2273
HhaI	GCGC	4 cut(s)	317, 600, 1827, 3238
Hin1I	GRCGYC	5 cut(s)	210, 315, 321, 648, 970
Hin6I	GCGC	4 cut(s)	315, 598, 1825, 3236
HinP1I	GCGC	4 cut(s)	315, 598, 1825, 3236
HincII	GTYRAC	3 cut(s)	343, 1999, 3105
HindII	GTYRAC	3 cut(s)	343, 1999, 3105
HpaI	GTTAAC	2 cut(s)	1999, 3105
HpaII	CCGG	4 cut(s)	502, 2094, 2722, 2827
Hpy99I	CGWCG	5 cut(s)	16, 323, 344, 882, 2889
HpyCH4IV	ACGT	1 cut(s)	3450
HpyF3I	CTNAG	8 cut(s)	450, 1287, 1684, 1854, 2061, 2478, 3139, 3207
HpySE526I	ACGT	1 cut(s)	3450
Hsp92I	GRCGYC	5 cut(s)	210, 315, 321, 648, 970
HspAI	GCGC	4 cut(s)	315, 598, 1825, 3236
KasI	GGCGCC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	655
KspAI	GTTAAC	2 cut(s)	1999, 3105
KspI	CCGCGG	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	2525
LmnI	GCTCC	4 cut(s)	1168, 1963, 2408, 2801
Lsp1109I	GCAGC	5 cut(s)	36, 1657, 1679, 2316, 3124
LweI	GCATC	8 cut(s)	171, 316, 1008, 1278, 1708, 1749, 2165, 2425
MaeI	CTAG	7 cut(s)	1187, 1674, 1932, 2021, 2394, 3228, 3300
MaeII	ACGT	1 cut(s)	3450
MaeIII	GTNAC	3 cut(s)	1472, 1711, 2011
MbiI	CCGCTC	2 cut(s)	1171, 2777
MflI	RGATCY	3 cut(s)	975, 1877, 3125
MhlI	GDGCHC	7 cut(s)	477, 1177, 2486, 2537, 2798, 3055, 3299
Mly113I	GGCGCC	1 cut(s)	315
MlyI	GAGTC	6 cut(s)	440, 677, 1747, 2018, 2981, 3257
MmeI	TCCRAC	7 cut(s)	102, 691, 2152, 2847, 3030, 3257, 3468
Mph1103I	ATGCAT	1 cut(s)	3079
MslI	CAYNNNNRTG	6 cut(s)	753, 1050, 1586, 1704, 2966, 3401
MspA1I	CMGCKG	3 cut(s)	36, 1670, 2809
MspI	CCGG	4 cut(s)	502, 2094, 2722, 2827
MspR9I	CCNGG	6 cut(s)	502, 1154, 1425, 1531, 2627, 2827
MssI	GTTTAAAC	1 cut(s)	1341
Mva1269I	GAATGC	3 cut(s)	1101, 1827, 3077
MvaI	CCWGG	4 cut(s)	1154, 1425, 1531, 2627
MvnI	CGCG	2 cut(s)	36, 129
NarI	GGCGCC	1 cut(s)	315
NciI	CCSGG	2 cut(s)	502, 2827
NcoI	CCATGG	3 cut(s)	861, 1124, 1644
NdeI	CATATG	1 cut(s)	2245
NmeAIII	GCCGAG	3 cut(s)	278, 574, 2601
NmuCI	GTSAC	2 cut(s)	1472, 1711
NotI	GCGGCCGC	1 cut(s)	3497
NsiI	ATGCAT	1 cut(s)	3079
NspI	RCATGY	3 cut(s)	2040, 3077, 3337
NspV	TTCGAA	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	3077
PaeR7I	CTCGAG	1 cut(s)	1562
PceI	AGGCCT	1 cut(s)	1534
PciI	ACATGT	2 cut(s)	2036, 3333
PciSI	GCTCTTC	1 cut(s)	2525
PctI	GAATGC	3 cut(s)	1101, 1827, 3077
PfeI	GAWTC	4 cut(s)	308, 590, 3224, 3322
PflFI	GACNNNGTC	1 cut(s)	2910
PleI	GAGTC	6 cut(s)	440, 676, 1747, 2018, 2980, 3257
PluTI	GGCGCC	1 cut(s)	318
PmeI	GTTTAAAC	1 cut(s)	1341
PpsI	GAGTC	6 cut(s)	440, 676, 1747, 2018, 2980, 3257
PpuMI	RGGWCCY	2 cut(s)	358, 912
PscI	ACATGT	2 cut(s)	2036, 3333
Psp5II	RGGWCCY	2 cut(s)	358, 912
Psp6I	CCWGG	4 cut(s)	1152, 1423, 1529, 2625
PspFI	CCCAGC	3 cut(s)	42, 720, 2439
PspGI	CCWGG	4 cut(s)	1152, 1423, 1529, 2625
PspOMI	GGGCCC	1 cut(s)	2482
PspPPI	RGGWCCY	2 cut(s)	358, 912
PstI	CTGCAG	1 cut(s)	2334
PstNI	CAGNNNCTG	2 cut(s)	1064, 2267
PsuI	RGATCY	3 cut(s)	975, 1877, 3125
PsyI	GACNNNGTC	1 cut(s)	2910
PvuII	CAGCTG	1 cut(s)	1670
RsaI	GTAC	9 cut(s)	17, 365, 528, 1217, 1579, 1613, 1812, 2390, 2580
RsaNI	GTAC	9 cut(s)	16, 364, 527, 1216, 1578, 1612, 1811, 2389, 2579
RseI	CAYNNNNRTG	6 cut(s)	753, 1050, 1586, 1704, 2966, 3401
SacII	CCGCGG	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	341
SapI	GCTCTTC	1 cut(s)	2525
ScaI	AGTACT	2 cut(s)	528, 1812
SchI	GAGTC	6 cut(s)	440, 677, 1747, 2018, 2981, 3257
ScrFI	CCNGG	6 cut(s)	502, 1154, 1425, 1531, 2627, 2827
SduI	GDGCHC	7 cut(s)	477, 1177, 2486, 2537, 2798, 3055, 3299
SfaNI	GCATC	8 cut(s)	171, 316, 1008, 1278, 1708, 1749, 2165, 2425
SfcI	CTRYAG	1 cut(s)	2330
SfoI	GGCGCC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	1562
Sfr303I	CCGCGG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	37
SinI	GGWCC	3 cut(s)	358, 912, 1383
SlaI	CTCGAG	1 cut(s)	1562
SmiI	ATTTAAAT	1 cut(s)	2703
SmiMI	CAYNNNNRTG	6 cut(s)	753, 1050, 1586, 1704, 2966, 3401
SmlI	CTYRAG	2 cut(s)	1562, 3438
SmoI	CTYRAG	2 cut(s)	1562, 3438
SphI	GCATGC	1 cut(s)	3077
SseBI	AGGCCT	1 cut(s)	1534
SspDI	GGCGCC	1 cut(s)	314
SspMI	CTAG	7 cut(s)	1187, 1674, 1932, 2021, 2394, 3228, 3300
StuI	AGGCCT	1 cut(s)	1534
StyD4I	CCNGG	6 cut(s)	500, 1152, 1423, 1529, 2625, 2825
StyI	CCWWGG	5 cut(s)	354, 861, 1124, 1644, 2513
SwaI	ATTTAAAT	1 cut(s)	2703
TaiI	ACGT	1 cut(s)	3453
TatI	WGTACW	5 cut(s)	526, 1215, 1810, 2388, 2578
TauI	GCSGC	7 cut(s)	36, 39, 42, 305, 3146, 3499, 3502
TfiI	GAWTC	4 cut(s)	308, 590, 3224, 3322
TscAI	CASTG	4 cut(s)	948, 1218, 3055, 3114
TseFI	GTSAC	2 cut(s)	1472, 1711
TseI	GCWGC	5 cut(s)	24, 1667, 1670, 2329, 3112
Tsp45I	GTSAC	2 cut(s)	1472, 1711
TspGWI	ACGGA	3 cut(s)	866, 3057, 3459
TspRI	CASTG	4 cut(s)	948, 1218, 3055, 3114
Tth111I	GACNNNGTC	1 cut(s)	2910
VneI	GTGCAC	1 cut(s)	3295
VpaK11BI	GGWCC	3 cut(s)	358, 912, 1383
XagI	CCTNNNNNAGG	1 cut(s)	1391
XapI	RAATTY	3 cut(s)	952, 2204, 2585
XbaI	TCTAGA	1 cut(s)	2020
XceI	RCATGY	3 cut(s)	2040, 3077, 3337
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1703, 2520
XhoI	CTCGAG	1 cut(s)	1562
XmiI	GTMKAC	3 cut(s)	342, 2109, 3413
XspI	CTAG	7 cut(s)	1187, 1674, 1932, 2021, 2394, 3228, 3300
ZrmI	AGTACT	2 cut(s)	528, 1812
Zsp2I	ATGCAT	1 cut(s)	3079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.