Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010099

Physical Location & Seq

Genomic Coordinates Forward (+)

84097602 .. 84102375

Gene Structure 4774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53764

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3492 bp

ATGGCCTTCTCGTCCTTCAGCACTCGCCGCGGCGGCGGTTGGGCCCACTCGCTCCTCCCTTCCACCGCCACCTCCTCCGCCAAATCCAAGCACACAAGAAAGCCCCGGCGGCGATTGCTCCTCCGCGACTTCCTCTTCGCCAACTTCTTCACCATCGGCCTCTCCGTCTCCCTCTTCTTCTTTTTCCTCGTCGTCCTCCGCTACGGCGTCCCGCACCCGATCACCGCCCACTTCAAGCCCACCAGGTCACCGATCCGCTTCCCCAAGCCCCGAATCAAACCCCTCCCCCGTAGAAGGCCCGGCGGGAGCAACAACGACGCCGTTTCGGGCGCGGCCGTGGACATCACCACCAAGGAGCTTTACGACAAGATCGAATTCTCCGACGTCGACGGCGGGCCGTGGAAGCAGGGATGGAGAGTCAATTACAAAGGCGACGAGTGGGACTCTGAGAAGTTGAAGGTGATTTTGGTGCCGCACTCGCATAACGATCCGGGGTGGAAGCTCACTGTGGAGGAGTACTATGAGAGGCAGTCCAGGCATATACTCGACACCATCGTTGATACACTCTCCAAGGATACTCGGCGCAAGTTTATATGGGAAGAGATGTCTTATCTGGAAAGGTGGTGGAGAGACTCCTCGGATGACAAAAGAGAATTGTTCACCAATCTGGTAAAGAATGGTCAGCTAGAAATTGTTGGAGGTGGCTGGGTGATGAATGATGAGGCTAATTCACATTACTATGCCATAATTGAACAGATCACAGAAGGAAATTTGTGGCTGAATGAAACCGTGGGTGTTGTTCCTAAGAATTCGTGGGCAATAGATCCATTTGGTTACTCACCCACCATGGCATATCTTCTGCGCCGTATGGGTTTCGAAAATATGCTCATTCAGAGGACCCATTACGAGCTTAAGAAAGAACTTGCACTGCACAAGAATTTGGAGTATATATGGCGTCAGAGCTGGGATGTCGATGAATCTACTGATATTTTTGTCCACATGATGCCCTTTTATTCTTATGATATTCCACATACTTGTGGGCCAGAGCCAGCTATTTGTTGTCAGTTCGACTTTGCTCGTATGCGTGGCTTTATGTATGAACTTTGTCCTTGGGGAGACCATCCAGTAGAGACTAACCAAGAAAATGTGCGGGAGCGGGCACTTCTACTACTAGATCAATATAGGAAGAAATCAACACTGTACAGGACAAATACACTTCTTATTCCTCTTGGAGATGATTTCCGCTACGTTAGCATAGATGAAGCTGAAGCTCAGTTTAGGAATTATCAAATGTTATTTGATTATATCAATTCTAATCCCAGTTTAAATGCTGAGGCGCATTTTGGAACTTTGGAAGACTACTTTCGAACCATTCGTGAGGAGGCTGAAAGAATAAATTACTCACTTCCTGGGGAGATTGGTTCCGGTCAGGTTGGAGGTTTTCCTTCTTTGTCGGGTGACTTCTTTACTTATGCTGACAGGCAACAGGACTATTGGAGTGGTTATTATGTATCAAGGCCTTTCTTCAAGGCTGTTGATCGAGTACTAGAGCATACGCTTCGTACCACGGATATGATGATGGCTTTCCTGCTTGGGTACTGTGGGAGATCACAATGCGAAAAGTTACCCTTGGGGTTTTCCTACAAGTTGGCAGCTGCTAGAAGGAATTTAGCTCTTTTTCAGCATCATGATGGTGTAACTGGTACTGCTAAAGATCATGTTGTCCTGGATTATGGGACTCGGATGCACACTTCCTTGCAGGACTTGCAGATTTTCATGTCTAAAGCTATTGAAGTGTTGCTTGGAATACGCCATGACAAATATGATAACCCTTCTCAGTTTGAGGCAGAACAGGTGAGATCTAAATATGATGTCCAGCCTGTTCATAGAGCAATCATGGCTCGTGAAGGAACCCGCCAAACAGTGGTCTTTTTTAATCCCTTGGAGCAGATAAGAGAAGAGGTTGTGATGGTTATTGTTAACCGTCCCGATGTTACTGTTCTGGACTTGAACTGGACATGTGTCCCAAGCCAAATATCGCCTGAATTGCAGCATGATAAAAGCAAAATCTTCACTGGAAGGCATCGTGTCTACTGGCAGGCTTCTGTTCCTGCTCTGGGGTTGCAGACATATTATATAACTAATGGGTTTGTTGGATGTGAAAAGGCGAAACCAGCAAAACTTAGATACTTCTCAAAGTCTAGTTCTTTCTCTTGCCCCACTCCATATCCTTGTTCGAAAGTAGAAGCTGATGTGGCTGAAATCAAGAACAGGCATCAAACACTCACTTTTGATGTCAATCGTGGTTTGTTGCAGAAAATAAGCTACAAAAATGGGTCCCAAATTGTTGTGGGTGAAGAAATAGCTATGTACTCTAGCTGGGGAAGTGGAGCATACCTTTTTAAACCTGATGGTGATGCGCAGCCTATCATTACAGCAGGTGGGCAGATGGTGATCTCTGAGGGACCTTTGGTGCAGGAAGTATATTCTTATCCAAGTACACAAAGCGAGAAGAGCCCCATTTCTCATAGCACCCGTCTCTACAACGGAGATAATACTGTACAGGAGTTTTTCATTGAGAAGGAATATCATGTTGAGCTCCTCGACCAGCAGTTTAATGACAAGGAGTTGATAGTTAGATACAGAACAGATATTGACAACAAAAAAGTATTCTTTTCTGATTTAAATGGCTTTCAGATGAGCAGGAGAGAAACCTACGATAAAATCCCCCTCCAGGGCAATTACTACCCTATGCCCTCTCTTGCATTCATGCAAGGATCTAATGGTCAGCGGTTTTCTGTCCATTCCCGGCAGTCATTGGGTGTGGCAAGCCTTAAAAATGGATGGTTGGAGATTATGCTTGACCGTCGTTTGGTAAGAGATGACGGACGTGGTCTTGGACAAGGAGTGATGGACAACCGTGCAATGAATGTAATCTTCCACATCCTTGTAGAGTCCAACATTTCTTGTGCATCAAACCCAGTTTCCAACCCATTGCCGTTAAACCCCTCTCTTCTTTCCCACCGTGTCGGTGCTGACCTGAACTATCCATTGCATTCATTCATTTCCAAGAAGCCAGAGGATTTGTCAGTGCAACCACCCCCAAGATCATTCTCACCTCTAGCTGCACCCTTACCTTGTGATCTGCATATTGTAAGTTTAAAGGTTCCTCAACCTTTAAAATTCTCAGAGCTACCACTTGAAAATTCTAGGTTTGTCCTAACATTACAGAGACGAAGTTGGGACTCTTCATATTGCCGGAAGGGCAGATCTGGTTGCACTAGGTTTGCTGATGAAAGTGTGAATTTGCTCAACATGTTCCGGGAGCTCACTGTATCGAATGCGAGAGCCACTTCATTAAATCTTCTACACGAAGACATAGATATGCTTGGATATACTGAGCAGTTTGGAGATGTTGCTCCAGAAGGGCAAGTCCTCATTTCTCCTATGGAAATACAGGCTTACAAGTTGGAGTTACAGCCACACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

1163

Amino Acids

133.57

Weight (kDa)

6.82

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_57	PF03065	141 - 305	1.4e-06	Glycosyl hydrolase family 57
Glyco_hydro_38N	PF01074	153 - 491	4.5e-83	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	498 - 600	1.5e-20	Alpha mannosidase middle domain
Glyco_hydro_38C	PF07748	755 - 964	5e-31	Glycosyl hydrolases family 38 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14950
fragaria_vesca	FvH4_6g49910 FvH4_6g49910
malus_domestica	MD09G1040900.v1.1 MD17G1042200.v1.1
prunus_persica	Prupe.3G276800_v2.0.a1
pyrus_communis	pycom111g03190 pycom17g03770
rosa_chinensis	RchiOBHm_Chr2g0170081
rosa_laevigata	RLG00000021920
rosa_multiflora	Rmu_co8321257.1_g000001 Rmu_sc0013078.1_g000007 Rmu_sc0013453.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081600
rosa_rugosa	Rorug02G0545500 Rorug02G0545600.1
rosa_samantha	Rh2AG617700 Rh2BG629200 Rh2CG598600 Rh2DG641000
rosa_wichuraiana	Rw2G051140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2429
AatII	GACGTC	1 cut(s)	387
Acc16I	TGCGCA	1 cut(s)	2421
Acc36I	ACCTGC	1 cut(s)	2429
AccB1I	GGYRCC	1 cut(s)	469
AccB7I	CCANNNNNTGG	1 cut(s)	1924
AccBSI	CCGCTC	1 cut(s)	1156
AccI	GTMKAC	2 cut(s)	387, 2091
AccII	CGCG	3 cut(s)	30, 126, 332
AclWI	GGATC	4 cut(s)	247, 482, 818, 2785
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	8 cut(s)	374, 769, 808, 937, 1666, 3182, 3205, 3304
AcuI	CTGAAG	1 cut(s)	1287
AcyI	GRCGYC	4 cut(s)	207, 318, 384, 955
AfaI	GTAC	9 cut(s)	518, 1202, 1545, 1564, 1598, 1705, 2372, 2500, 2562
AfiI	CCNNNNNNNGG	6 cut(s)	294, 1924, 2117, 2734, 2735, 2872
AflII	CTTAAG	1 cut(s)	911
AflIII	ACRYGT	2 cut(s)	2018, 3315
AgsI	TTSAA	7 cut(s)	235, 457, 752, 1528, 1793, 2011, 3203
AjiI	CACGTC	1 cut(s)	2891
AjnI	CCWGG	5 cut(s)	242, 533, 1408, 1725, 2733
AjuI	GAANNNNNNNTTGG	4 cut(s)	449, 481, 1785, 1817
Alw21I	GWGCWC	2 cut(s)	2601, 3330
Alw26I	GTCTC	6 cut(s)	172, 624, 1110, 1124, 2543, 3226
AlwI	GGATC	4 cut(s)	247, 482, 818, 2785
AoxI	GGCC	8 cut(s)	3, 42, 157, 296, 333, 395, 1040, 1517
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	5 cut(s)	1652, 1655, 2050, 2422, 3125
ApoI	RAATTY	8 cut(s)	374, 769, 808, 937, 1666, 3182, 3205, 3304
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	5 cut(s)	332, 585, 864, 1339, 2422
AspS9I	GGNCC	8 cut(s)	42, 43, 297, 395, 897, 1040, 2337, 2465
AsuC2I	CCSGG	5 cut(s)	106, 300, 492, 2809, 3323
AsuII	TTCGAA	3 cut(s)	876, 1366, 2237
AvaII	GGWCC	3 cut(s)	897, 2337, 2465
BaeGI	GKGCMC	2 cut(s)	46, 1162
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	4 cut(s)	46, 2519, 2601, 3330
BauI	CACGAG	1 cut(s)	1902
BbsI	GAAGAC	2 cut(s)	1362, 3381
Bbv12I	GWGCWC	2 cut(s)	2601, 3330
BbvCI	CCTCAGC	1 cut(s)	1332
BbvI	GCAGC	5 cut(s)	1642, 1664, 2062, 2434, 3112
BceAI	ACGGC	7 cut(s)	220, 305, 320, 382, 406, 849, 2983
BcgI	CGANNNNNNTGC	2 cut(s)	1541, 1575
BciT130I	CCWGG	5 cut(s)	244, 535, 1410, 1727, 2735
BciVI	GTATCC	1 cut(s)	568
BcnI	CCSGG	5 cut(s)	106, 300, 492, 2809, 3323
BcoDI	GTCTC	6 cut(s)	172, 624, 1110, 1124, 2543, 3226
BfaI	CTAG	9 cut(s)	686, 1172, 1547, 1659, 2202, 2376, 3122, 3210, 3282
BfrI	CTTAAG	1 cut(s)	911
BfuAI	ACCTGC	1 cut(s)	2429
BfuI	GTATCC	1 cut(s)	568
BglI	GCCNNNNNGGC	3 cut(s)	33, 109, 3264
BglII	AGATCT	2 cut(s)	1859, 3269
BmcAI	AGTACT	2 cut(s)	518, 1545
Bme18I	GGWCC	3 cut(s)	897, 2337, 2465
BmgBI	CACGTC	1 cut(s)	2891
BmgT120I	GGNCC	8 cut(s)	42, 43, 297, 395, 897, 1040, 2337, 2465
BmiI	GGNNCC	9 cut(s)	44, 471, 899, 1423, 1912, 2338, 2339, 2466, 3168
BmrI	ACTGGG	2 cut(s)	1314, 2975
BmsI	GCATC	7 cut(s)	993, 1693, 1734, 2092, 2284, 2407, 2981
BmuI	ACTGGG	2 cut(s)	1314, 2975
BoxI	GACNNNNGTC	1 cut(s)	2021
BpiI	GAAGAC	2 cut(s)	1362, 3381
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpmI	CTGGAG	2 cut(s)	2717, 3405
Bpu10I	CCTNAGC	1 cut(s)	1332
Bpu14I	TTCGAA	3 cut(s)	876, 1366, 2237
BpuMI	CCSGG	5 cut(s)	106, 300, 492, 2809, 3323
BsaBI	GATNNNNATC	2 cut(s)	2298, 2453
BsaHI	GRCGYC	4 cut(s)	207, 318, 384, 955
BsaI	GGTCTC	1 cut(s)	1110
BsaWI	WCCGGW	1 cut(s)	1424
Bsc4I	CCNNNNNNNGG	6 cut(s)	294, 1924, 2117, 2734, 2735, 2872
Bse1I	ACTGG	7 cut(s)	1124, 1320, 1705, 2018, 2080, 2099, 2981
Bse3DI	GCAATG	3 cut(s)	2931, 2993, 3050
Bse8I	GATNNNNATC	2 cut(s)	2298, 2453
BseBI	CCWGG	5 cut(s)	244, 535, 1410, 1727, 2735
BseGI	GGATG	8 cut(s)	416, 646, 973, 1120, 1749, 2162, 2849, 2943
BseJI	GATNNNNATC	2 cut(s)	2298, 2453
BseLI	CCNNNNNNNGG	6 cut(s)	294, 1924, 2117, 2734, 2735, 2872
BseMI	GCAATG	3 cut(s)	2931, 2993, 3050
BseMII	CTCAG	7 cut(s)	438, 1286, 1323, 1850, 2451, 3201, 3390
BseNI	ACTGG	7 cut(s)	1124, 1320, 1705, 2018, 2080, 2099, 2981
BseRI	GAGGAG	7 cut(s)	44, 64, 110, 527, 625, 1394, 2591
BseSI	GKGCMC	2 cut(s)	46, 1162
BseX3I	CGGCCG	1 cut(s)	333
BseXI	GCAGC	5 cut(s)	1642, 1664, 2062, 2434, 3112
BseYI	CCCAGC	3 cut(s)	705, 963, 2379
BsgI	GTGCAG	3 cut(s)	914, 2495, 3111
Bsh1236I	CGCG	3 cut(s)	30, 126, 332
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	8 cut(s)	5, 44, 159, 298, 335, 397, 1042, 1519
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	336
BsiHKAI	GWGCWC	2 cut(s)	2601, 3330
BsiSI	CCGG	7 cut(s)	106, 300, 491, 1425, 2809, 3259, 3322
BslFI	GGGAC	8 cut(s)	194, 455, 1750, 1971, 2009, 2323, 2478, 3257
BslI	CCNNNNNNNGG	6 cut(s)	294, 1924, 2117, 2734, 2735, 2872
BsmAI	GTCTC	6 cut(s)	172, 624, 1110, 1124, 2543, 3226
BsmBI	CGTCTC	3 cut(s)	172, 2543, 3226
BsmFI	GGGAC	8 cut(s)	194, 455, 1750, 1971, 2009, 2323, 2478, 3257
BsmI	GAATGC	3 cut(s)	2765, 3055, 3346
BsnI	GGCC	8 cut(s)	5, 44, 159, 298, 335, 397, 1042, 1519
Bso31I	GGTCTC	1 cut(s)	1110
Bsp119I	TTCGAA	3 cut(s)	876, 1366, 2237
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	5 cut(s)	46, 1162, 2519, 2601, 3330
Bsp1407I	TGTACA	2 cut(s)	1200, 2560
Bsp19I	CCATGG	1 cut(s)	846
BspANI	GGCC	8 cut(s)	5, 44, 159, 298, 335, 397, 1042, 1519
BspCNI	CTCAG	7 cut(s)	439, 1285, 1324, 1849, 2452, 3200, 3391
BspFNI	CGCG	3 cut(s)	30, 126, 332
BspHI	TCATGA	1 cut(s)	1687
BspLI	GGNNCC	9 cut(s)	44, 471, 899, 1423, 1912, 2338, 2339, 2466, 3168
BspMI	ACCTGC	1 cut(s)	2429
BspPI	GGATC	4 cut(s)	247, 482, 818, 2785
BspQI	GCTCTTC	1 cut(s)	2507
BspT104I	TTCGAA	3 cut(s)	876, 1366, 2237
BspT107I	GGYRCC	1 cut(s)	469
BspTI	CTTAAG	1 cut(s)	911
BspTNI	GGTCTC	1 cut(s)	1110
BsrBI	CCGCTC	1 cut(s)	1156
BsrDI	GCAATG	3 cut(s)	2931, 2993, 3050
BsrGI	TGTACA	2 cut(s)	1200, 2560
BsrI	ACTGG	7 cut(s)	1124, 1320, 1705, 2018, 2080, 2099, 2981
BssNI	GRCGYC	4 cut(s)	207, 318, 384, 955
BssSI	CACGAG	1 cut(s)	1902
BssT1I	CCWWGG	6 cut(s)	351, 570, 846, 1109, 1629, 1941
Bst2BI	CACGAG	1 cut(s)	1902
Bst2UI	CCWGG	5 cut(s)	244, 535, 1410, 1727, 2735
Bst6I	CTCTTC	7 cut(s)	140, 179, 594, 1953, 2507, 3018, 3253
BstACI	GRCGYC	4 cut(s)	207, 318, 384, 955
BstAFI	CTTAAG	1 cut(s)	911
BstAPI	GCANNNNNTGC	1 cut(s)	1765
BstAUI	TGTACA	2 cut(s)	1200, 2560
BstBI	TTCGAA	3 cut(s)	876, 1366, 2237
BstC8I	GCNNGC	5 cut(s)	395, 1050, 1158, 2100, 2830
BstDEI	CTNAG	9 cut(s)	447, 804, 1272, 1332, 1836, 2183, 2460, 3187, 3399
BstDSI	CCRYGG	6 cut(s)	28, 336, 398, 789, 846, 1566
BstEII	GGTNACC	1 cut(s)	246
BstF5I	GGATG	8 cut(s)	416, 646, 973, 1120, 1749, 2162, 2849, 2943
BstFNI	CGCG	3 cut(s)	30, 126, 332
BstHHI	GCGC	5 cut(s)	332, 585, 864, 1339, 2422
BstMAI	GTCTC	6 cut(s)	172, 624, 1110, 1124, 2543, 3226
BstMCI	CGRYCG	1 cut(s)	336
BstNI	CCWGG	5 cut(s)	244, 535, 1410, 1727, 2735
BstNSI	RCATGY	2 cut(s)	2022, 3319
BstPAI	GACNNNNGTC	1 cut(s)	2021
BstPI	GGTNACC	1 cut(s)	246
BstSLI	GKGCMC	2 cut(s)	46, 1162
BstUI	CGCG	3 cut(s)	30, 126, 332
BstV1I	GCAGC	5 cut(s)	1642, 1664, 2062, 2434, 3112
BstV2I	GAAGAC	2 cut(s)	1362, 3381
BstX2I	RGATCY	4 cut(s)	823, 1859, 2777, 3269
BstYI	RGATCY	4 cut(s)	823, 1859, 2777, 3269
BstZI	CGGCCG	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	8 cut(s)	5, 44, 159, 298, 335, 397, 1042, 1519
BtgI	CCRYGG	6 cut(s)	28, 336, 398, 789, 846, 1566
BtrI	CACGTC	1 cut(s)	2891
BtsCI	GGATG	8 cut(s)	416, 646, 973, 1120, 1749, 2162, 2849, 2943
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	7 cut(s)	504, 926, 1196, 1929, 2073, 3096, 3330
BveI	ACCTGC	1 cut(s)	2429
Cac8I	GCNNGC	5 cut(s)	395, 1050, 1158, 2100, 2830
CciI	TCATGA	1 cut(s)	1687
CfoI	GCGC	5 cut(s)	332, 585, 864, 1339, 2422
Cfr13I	GGNCC	8 cut(s)	42, 43, 297, 395, 897, 1040, 2337, 2465
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	3 cut(s)	196, 326, 944
CsiI	ACCWGGT	1 cut(s)	242
Csp6I	GTAC	9 cut(s)	517, 1201, 1544, 1563, 1597, 1704, 2371, 2499, 2561
CviQI	GTAC	9 cut(s)	517, 1201, 1544, 1563, 1597, 1704, 2371, 2499, 2561
DdeI	CTNAG	9 cut(s)	447, 804, 1272, 1332, 1836, 2183, 2460, 3187, 3399
DraI	TTTAAA	5 cut(s)	1326, 2404, 2685, 3162, 3180
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	7 cut(s)	140, 179, 594, 1953, 2507, 3018, 3253
EarI	CTCTTC	7 cut(s)	140, 179, 594, 1953, 2507, 3018, 3253
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	2 cut(s)	2599, 3328
EclXI	CGGCCG	1 cut(s)	333
Eco130I	CCWWGG	6 cut(s)	351, 570, 846, 1109, 1629, 1941
Eco147I	AGGCCT	1 cut(s)	1519
Eco24I	GRGCYC	4 cut(s)	46, 2519, 2601, 3330
Eco31I	GGTCTC	1 cut(s)	1110
Eco47I	GGWCC	3 cut(s)	897, 2337, 2465
Eco52I	CGGCCG	1 cut(s)	333
Eco53kI	GAGCTC	2 cut(s)	2599, 3328
Eco57I	CTGAAG	1 cut(s)	1287
Eco91I	GGTNACC	1 cut(s)	246
EcoICRI	GAGCTC	2 cut(s)	2599, 3328
EcoO109I	RGGNCCY	3 cut(s)	897, 2337, 2465
EcoO65I	GGTNACC	1 cut(s)	246
EcoRI	GAATTC	2 cut(s)	374, 808
EcoRII	CCWGG	5 cut(s)	242, 533, 1408, 1725, 2733
EcoT14I	CCWWGG	6 cut(s)	351, 570, 846, 1109, 1629, 1941
EcoT38I	GRGCYC	4 cut(s)	46, 2519, 2601, 3330
ErhI	CCWWGG	6 cut(s)	351, 570, 846, 1109, 1629, 1941
Esp3I	CGTCTC	3 cut(s)	172, 2543, 3226
FalI	AAGNNNNNCTT	4 cut(s)	1613, 1645, 1785, 1817
FaqI	GGGAC	8 cut(s)	194, 455, 1750, 1971, 2009, 2323, 2478, 3257
FauI	CCCGC	6 cut(s)	219, 296, 386, 1143, 1149, 1922
FblI	GTMKAC	2 cut(s)	387, 2091
FokI	GGATG	8 cut(s)	423, 653, 980, 1107, 1756, 2169, 2856, 2930
FriOI	GRGCYC	4 cut(s)	46, 2519, 2601, 3330
FspBI	CTAG	9 cut(s)	686, 1172, 1547, 1659, 2202, 2376, 3122, 3210, 3282
FspI	TGCGCA	1 cut(s)	2421
GlaI	GCGC	5 cut(s)	331, 584, 863, 1338, 2421
GsaI	CCCAGC	3 cut(s)	709, 967, 2383
GsuI	CTGGAG	2 cut(s)	2717, 3405
HaeIII	GGCC	8 cut(s)	5, 44, 159, 298, 335, 397, 1042, 1519
HapII	CCGG	7 cut(s)	106, 300, 491, 1425, 2809, 3259, 3322
HgaI	GACGC	3 cut(s)	196, 326, 944
HhaI	GCGC	5 cut(s)	332, 585, 864, 1339, 2422
Hin1I	GRCGYC	4 cut(s)	207, 318, 384, 955
Hin6I	GCGC	5 cut(s)	330, 583, 862, 1337, 2420
HinP1I	GCGC	5 cut(s)	330, 583, 862, 1337, 2420
HincII	GTYRAC	2 cut(s)	388, 1981
HindII	GTYRAC	2 cut(s)	388, 1981
HinfI	GANTC	8 cut(s)	273, 417, 443, 632, 977, 1738, 2954, 3245
HpaI	GTTAAC	1 cut(s)	1981
HpaII	CCGG	7 cut(s)	106, 300, 491, 1425, 2809, 3259, 3322
Hpy166II	GTNNAC	7 cut(s)	340, 388, 660, 997, 1981, 2092, 2501
Hpy188III	TCNNGA	8 cut(s)	614, 1376, 1688, 1904, 1988, 2003, 2266, 3422
Hpy8I	GTNNAC	7 cut(s)	340, 388, 660, 997, 1981, 2092, 2501
Hpy99I	CGWCG	7 cut(s)	194, 320, 386, 389, 392, 437, 2871
HpyCH4IV	ACGT	3 cut(s)	384, 1248, 2890
HpyF3I	CTNAG	9 cut(s)	447, 804, 1272, 1332, 1836, 2183, 2460, 3187, 3399
HpySE526I	ACGT	3 cut(s)	384, 1248, 2890
Hsp92I	GRCGYC	4 cut(s)	207, 318, 384, 955
HspAI	GCGC	5 cut(s)	330, 583, 862, 1337, 2420
KflI	GGGWCCC	1 cut(s)	2337
KspAI	GTTAAC	1 cut(s)	1981
KspI	CCGCGG	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	2507
Lsp1109I	GCAGC	5 cut(s)	1642, 1664, 2062, 2434, 3112
LweI	GCATC	7 cut(s)	993, 1693, 1734, 2092, 2284, 2407, 2981
MabI	ACCWGGT	1 cut(s)	242
MaeI	CTAG	9 cut(s)	686, 1172, 1547, 1659, 2202, 2376, 3122, 3210, 3282
MaeII	ACGT	3 cut(s)	384, 1248, 2890
MaeIII	GTNAC	7 cut(s)	246, 833, 1457, 1623, 1696, 1993, 3474
MbiI	CCGCTC	1 cut(s)	1156
MflI	RGATCY	4 cut(s)	823, 1859, 2777, 3269
MhlI	GDGCHC	5 cut(s)	46, 1162, 2519, 2601, 3330
MlyI	GAGTC	6 cut(s)	426, 437, 626, 1732, 2963, 3239
MmeI	TCCRAC	8 cut(s)	405, 676, 1414, 2134, 2829, 2982, 3012, 3450
MslI	CAYNNNNRTG	7 cut(s)	738, 1035, 1571, 1689, 1692, 3383, 3487
MspA1I	CMGCKG	3 cut(s)	30, 1655, 2791
MspCI	CTTAAG	1 cut(s)	911
MspI	CCGG	7 cut(s)	106, 300, 491, 1425, 2809, 3259, 3322
Mva1269I	GAATGC	3 cut(s)	2765, 3055, 3346
MvaI	CCWGG	5 cut(s)	244, 535, 1410, 1727, 2735
MvnI	CGCG	3 cut(s)	30, 126, 332
NciI	CCSGG	5 cut(s)	106, 300, 492, 2809, 3323
NcoI	CCATGG	1 cut(s)	846
NlaIV	GGNNCC	9 cut(s)	44, 471, 899, 1423, 1912, 2338, 2339, 2466, 3168
NmeAIII	GCCGAG	1 cut(s)	559
NmuCI	GTSAC	2 cut(s)	246, 1457
NsbI	TGCGCA	1 cut(s)	2421
NspI	RCATGY	2 cut(s)	2022, 3319
NspV	TTCGAA	3 cut(s)	876, 1366, 2237
PagI	TCATGA	1 cut(s)	1687
PaqCI	CACCTGC	1 cut(s)	2429
PceI	AGGCCT	1 cut(s)	1519
PciI	ACATGT	2 cut(s)	2018, 3315
PciSI	GCTCTTC	1 cut(s)	2507
PcsI	WCGNNNNNNNCGW	5 cut(s)	162, 369, 378, 552, 1372
PctI	GAATGC	3 cut(s)	2765, 3055, 3346
PfeI	GAWTC	2 cut(s)	273, 977
PflFI	GACNNNGTC	1 cut(s)	2892
PflMI	CCANNNNNTGG	1 cut(s)	1924
PfoI	TCCNGGA	2 cut(s)	1725, 3321
PleI	GAGTC	6 cut(s)	425, 437, 626, 1732, 2962, 3239
PpsI	GAGTC	6 cut(s)	425, 437, 626, 1732, 2962, 3239
PpuMI	RGGWCCY	3 cut(s)	897, 2337, 2465
PscI	ACATGT	2 cut(s)	2018, 3315
PshAI	GACNNNNGTC	1 cut(s)	2021
Psp124BI	GAGCTC	2 cut(s)	2601, 3330
Psp5II	RGGWCCY	3 cut(s)	897, 2337, 2465
Psp6I	CCWGG	5 cut(s)	242, 533, 1408, 1725, 2733
PspEI	GGTNACC	1 cut(s)	246
PspFI	CCCAGC	3 cut(s)	705, 963, 2379
PspGI	CCWGG	5 cut(s)	242, 533, 1408, 1725, 2733
PspN4I	GGNNCC	9 cut(s)	44, 471, 899, 1423, 1912, 2338, 2339, 2466, 3168
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	8 cut(s)	42, 43, 297, 395, 897, 1040, 2337, 2465
PspPPI	RGGWCCY	3 cut(s)	897, 2337, 2465
PsuI	RGATCY	4 cut(s)	823, 1859, 2777, 3269
PsyI	GACNNNGTC	1 cut(s)	2892
PvuII	CAGCTG	1 cut(s)	1655
RsaI	GTAC	9 cut(s)	518, 1202, 1545, 1564, 1598, 1705, 2372, 2500, 2562
RsaNI	GTAC	9 cut(s)	517, 1201, 1544, 1563, 1597, 1704, 2371, 2499, 2561
RseI	CAYNNNNRTG	7 cut(s)	738, 1035, 1571, 1689, 1692, 3383, 3487
SacI	GAGCTC	2 cut(s)	2601, 3330
SacII	CCGCGG	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	2507
Sau96I	GGNCC	8 cut(s)	42, 43, 297, 395, 897, 1040, 2337, 2465
ScaI	AGTACT	2 cut(s)	518, 1545
SchI	GAGTC	6 cut(s)	426, 437, 626, 1732, 2963, 3239
SduI	GDGCHC	5 cut(s)	46, 1162, 2519, 2601, 3330
SexAI	ACCWGGT	1 cut(s)	242
SfaNI	GCATC	7 cut(s)	993, 1693, 1734, 2092, 2284, 2407, 2981
Sfr303I	CCGCGG	1 cut(s)	31
SfuI	TTCGAA	3 cut(s)	876, 1366, 2237
SgrBI	CCGCGG	1 cut(s)	31
SgrDI	CGTCGACG	1 cut(s)	386
SinI	GGWCC	3 cut(s)	897, 2337, 2465
SmiI	ATTTAAAT	1 cut(s)	2685
SmiMI	CAYNNNNRTG	7 cut(s)	738, 1035, 1571, 1689, 1692, 3383, 3487
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SseBI	AGGCCT	1 cut(s)	1519
SspMI	CTAG	9 cut(s)	686, 1172, 1547, 1659, 2202, 2376, 3122, 3210, 3282
SstI	GAGCTC	2 cut(s)	2601, 3330
StuI	AGGCCT	1 cut(s)	1519
StyI	CCWWGG	6 cut(s)	351, 570, 846, 1109, 1629, 1941
SwaI	ATTTAAAT	1 cut(s)	2685
TaiI	ACGT	3 cut(s)	387, 1251, 2893
TatI	WGTACW	6 cut(s)	516, 1200, 1543, 2370, 2498, 2560
TauI	GCSGC	6 cut(s)	30, 33, 36, 112, 335, 475
TfiI	GAWTC	2 cut(s)	273, 977
TscAI	CASTG	7 cut(s)	511, 933, 1203, 1929, 2080, 3096, 3337
TseFI	GTSAC	2 cut(s)	246, 1457
TseI	GCWGC	5 cut(s)	1652, 1655, 2050, 2422, 3125
Tsp45I	GTSAC	2 cut(s)	246, 1457
TspGWI	ACGGA	4 cut(s)	154, 1583, 2562, 2901
TspRI	CASTG	7 cut(s)	511, 933, 1203, 1929, 2080, 3096, 3337
Tth111I	GACNNNGTC	1 cut(s)	2892
Van91I	CCANNNNNTGG	1 cut(s)	1924
Vha464I	CTTAAG	1 cut(s)	911
VpaK11BI	GGWCC	3 cut(s)	897, 2337, 2465
XapI	RAATTY	8 cut(s)	374, 769, 808, 937, 1666, 3182, 3205, 3304
XceI	RCATGY	2 cut(s)	2022, 3319
XmiI	GTMKAC	2 cut(s)	387, 2091
XspI	CTAG	9 cut(s)	686, 1172, 1547, 1659, 2202, 2376, 3122, 3210, 3282
ZraI	GACGTC	1 cut(s)	385
ZrmI	AGTACT	2 cut(s)	518, 1545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.