Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8321257.1

Orthogroup ID

OG0010099

Physical Location & Seq

Genomic Coordinates Forward (+)

282 .. 863

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8321257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggccttctcgtccttcagcactcgccgcggcggcggttgggcccactcgctcctcccttccaccgccacctcctccgccaaatccaagcacacaagaaagccccggcggcgattgctcctccgcgacttcctcttcgccaacttcttcaccatcggcctctccgtctccctcttcttctttttcctcgtcgtcctccgctacggcgtcccgcacccgatcaccgcccacttcaagcccaccaggtcaccgatccgcttctccaagccccgaatcaaacccctcccccgtagaaggcccggcgggagcaacaacgacgccgtttcgggcgcggccgtggacatcaccaccaaggagctttacgacaagatcgaattctccgacgtcgacggcgggccgtggaagcagggatggagagtcaattacaaaggcgacgagtgggactctgagaagttgaaggtgattttggtgccgcactcgcataacgatccggggtggaagctcactgtggaggagtactacgagaggcagtccaggcatatactcgacaccatcgttgatacactctccaaggtgagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004572 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006486 GO:0006487 GO:0006491 GO:0006517 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0034645 GO:0036211 GO:0042538 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070085 GO:0071704 GO:0097708 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

Alpha-mann_mid Glyco_hydro_38 Glyco_hydro_38C

Protein Analysis

193

Amino Acids

22.04

Weight (kDa)

10.21

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14950
fragaria_vesca	FvH4_6g49910 FvH4_6g49910
malus_domestica	MD09G1040900.v1.1 MD17G1042200.v1.1
prunus_persica	Prupe.3G276800_v2.0.a1
pyrus_communis	pycom111g03190 pycom17g03770
rosa_chinensis	RchiOBHm_Chr2g0170081
rosa_laevigata	RLG00000021920
rosa_multiflora	Rmu_co8321257.1_g000001 Rmu_sc0013078.1_g000007 Rmu_sc0013453.1_g000004
rosa_roxburghii	Rroxscaffold_2G00081600
rosa_rugosa	Rorug02G0545500 Rorug02G0545600.1
rosa_samantha	Rh2AG617700 Rh2BG629200 Rh2CG598600 Rh2DG641000
rosa_wichuraiana	Rw2G051140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	3 cut(s)	30, 126, 332
AclWI	GGATC	2 cut(s)	247, 482
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	374
AcyI	GRCGYC	3 cut(s)	207, 318, 384
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	235, 457
AjnI	CCWGG	2 cut(s)	242, 533
AjuI	GAANNNNNNNTTGG	2 cut(s)	449, 481
AluBI	AGCT	3 cut(s)	358, 502, 579
AluI	AGCT	3 cut(s)	358, 502, 579
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	247, 482
AoxI	GGCC	6 cut(s)	3, 42, 157, 296, 333, 395
ApaI	GGGCCC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	4 cut(s)	42, 43, 297, 395
AsuC2I	CCSGG	3 cut(s)	106, 300, 492
AsuHPI	GGTGA	5 cut(s)	142, 214, 240, 337, 472
BaeGI	GKGCMC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	46
BccI	CCATC	3 cut(s)	161, 405, 560
BceAI	ACGGC	5 cut(s)	220, 305, 320, 382, 406
BciT130I	CCWGG	2 cut(s)	244, 535
BcnI	CCSGG	3 cut(s)	106, 300, 492
BcoDI	GTCTC	1 cut(s)	172
BglI	GCCNNNNNGGC	2 cut(s)	33, 109
BisI	GCNGC	6 cut(s)	28, 31, 34, 110, 333, 473
BlsI	GCNGC	6 cut(s)	29, 32, 35, 111, 334, 474
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	5 cut(s)	106, 244, 300, 492, 535
BmgT120I	GGNCC	4 cut(s)	42, 43, 297, 395
BmiI	GGNNCC	2 cut(s)	44, 471
BmrFI	CCNGG	5 cut(s)	106, 244, 300, 492, 535
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
BpuMI	CCSGG	3 cut(s)	106, 300, 492
BsaHI	GRCGYC	3 cut(s)	207, 318, 384
BsaJI	CCNNGG	7 cut(s)	28, 104, 336, 351, 398, 491, 570
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	244, 535
BseDI	CCNNGG	7 cut(s)	28, 104, 336, 351, 398, 491, 570
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	4 cut(s)	44, 64, 110, 527
BseSI	GKGCMC	1 cut(s)	46
BseX3I	CGGCCG	1 cut(s)	333
Bsh1236I	CGCG	3 cut(s)	30, 126, 332
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	6 cut(s)	5, 44, 159, 298, 335, 397
BshNI	GGYRCC	1 cut(s)	469
BsiEI	CGRYCG	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	106, 300, 491
BslFI	GGGAC	2 cut(s)	194, 455
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	194, 455
BsnI	GGCC	6 cut(s)	5, 44, 159, 298, 335, 397
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	219, 252, 369, 487
BspANI	GGCC	6 cut(s)	5, 44, 159, 298, 335, 397
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	3 cut(s)	30, 126, 332
BspLI	GGNNCC	2 cut(s)	44, 471
BspPI	GGATC	2 cut(s)	247, 482
BspT107I	GGYRCC	1 cut(s)	469
BssECI	CCNNGG	7 cut(s)	28, 104, 336, 351, 398, 491, 570
BssMI	GATC	4 cut(s)	219, 252, 369, 487
BssNI	GRCGYC	3 cut(s)	207, 318, 384
BssT1I	CCWWGG	2 cut(s)	351, 570
Bst2UI	CCWGG	2 cut(s)	244, 535
Bst4CI	ACNGT	1 cut(s)	508
Bst6I	CTCTTC	2 cut(s)	140, 179
BstACI	GRCGYC	3 cut(s)	207, 318, 384
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	3 cut(s)	28, 336, 398
BstEII	GGTNACC	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	3 cut(s)	30, 126, 332
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	4 cut(s)	222, 255, 372, 490
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	4 cut(s)	219, 252, 369, 487
BstMCI	CGRYCG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 33, 109, 115, 403, 478, 535
BstNI	CCWGG	2 cut(s)	244, 535
BstPI	GGTNACC	1 cut(s)	246
BstSCI	CCNGG	5 cut(s)	104, 242, 298, 490, 533
BstSLI	GKGCMC	1 cut(s)	46
BstUI	CGCG	3 cut(s)	30, 126, 332
BstZI	CGGCCG	1 cut(s)	333
BsuRI	GGCC	6 cut(s)	5, 44, 159, 298, 335, 397
BtgI	CCRYGG	3 cut(s)	28, 336, 398
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	4 cut(s)	42, 43, 297, 395
Cfr42I	CCGCGG	1 cut(s)	31
CseI	GACGC	2 cut(s)	196, 326
CsiI	ACCWGGT	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	517
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	4 cut(s)	221, 254, 371, 489
DpnII	GATC	4 cut(s)	219, 252, 369, 487
EaeI	YGGCCR	1 cut(s)	333
EagI	CGGCCG	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	140, 179
EarI	CTCTTC	2 cut(s)	140, 179
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	351, 570
Eco24I	GRGCYC	1 cut(s)	46
Eco52I	CGGCCG	1 cut(s)	333
Eco91I	GGTNACC	1 cut(s)	246
EcoO65I	GGTNACC	1 cut(s)	246
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	242, 533
EcoT14I	CCWWGG	2 cut(s)	351, 570
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	2 cut(s)	351, 570
Esp3I	CGTCTC	1 cut(s)	172
FaiI	YATR	3 cut(s)	483, 540, 542
FaqI	GGGAC	2 cut(s)	194, 455
FauI	CCCGC	3 cut(s)	219, 296, 386
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	6 cut(s)	28, 31, 34, 110, 333, 473
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	6 cut(s)	28, 31, 34, 110, 333, 473
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	6 cut(s)	28, 31, 34, 110, 333, 473
HaeIII	GGCC	6 cut(s)	5, 44, 159, 298, 335, 397
HapII	CCGG	3 cut(s)	106, 300, 491
HgaI	GACGC	2 cut(s)	196, 326
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	3 cut(s)	207, 318, 384
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	3 cut(s)	273, 417, 443
HpaII	CCGG	3 cut(s)	106, 300, 491
HphI	GGTGA	5 cut(s)	142, 214, 240, 337, 472
Hpy166II	GTNNAC	2 cut(s)	340, 388
Hpy188I	TCNGA	2 cut(s)	382, 448
Hpy8I	GTNNAC	2 cut(s)	340, 388
Hpy99I	CGWCG	6 cut(s)	194, 320, 386, 389, 392, 437
HpyAV	CCTTC	5 cut(s)	16, 25, 69, 288, 451
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	384
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 33, 109, 115, 403, 478, 535
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	3 cut(s)	207, 318, 384
HspAI	GCGC	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	219, 252, 369, 487
LmnI	GCTCC	4 cut(s)	57, 123, 306, 355
LpnPI	CCDG	8 cut(s)	119, 229, 256, 313, 392, 504, 520, 547
MabI	ACCWGGT	1 cut(s)	242
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	4 cut(s)	221, 254, 371, 489
MboI	GATC	4 cut(s)	219, 252, 369, 487
MboII	GAAGA	4 cut(s)	127, 139, 166, 169
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	374, 421
MlyI	GAGTC	2 cut(s)	426, 437
MmeI	TCCRAC	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	3 cut(s)	106, 300, 491
MspR9I	CCNGG	5 cut(s)	106, 244, 300, 492, 535
MvaI	CCWGG	2 cut(s)	244, 535
MvnI	CGCG	3 cut(s)	30, 126, 332
MwoI	GCNNNNNNNGC	7 cut(s)	27, 33, 109, 115, 403, 478, 535
NciI	CCSGG	3 cut(s)	106, 300, 492
NdeII	GATC	4 cut(s)	219, 252, 369, 487
NlaIV	GGNNCC	2 cut(s)	44, 471
NmuCI	GTSAC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	4 cut(s)	162, 369, 378, 552
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	6 cut(s)	29, 32, 35, 111, 334, 474
PleI	GAGTC	2 cut(s)	425, 437
PpsI	GAGTC	2 cut(s)	425, 437
Psp6I	CCWGG	2 cut(s)	242, 533
PspEI	GGTNACC	1 cut(s)	246
PspGI	CCWGG	2 cut(s)	242, 533
PspN4I	GGNNCC	2 cut(s)	44, 471
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	4 cut(s)	42, 43, 297, 395
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
SacII	CCGCGG	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	386
SatI	GCNGC	6 cut(s)	28, 31, 34, 110, 333, 473
Sau3AI	GATC	4 cut(s)	219, 252, 369, 487
Sau96I	GGNCC	4 cut(s)	42, 43, 297, 395
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	2 cut(s)	426, 437
ScrFI	CCNGG	5 cut(s)	106, 244, 300, 492, 535
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	8 cut(s)	74, 248, 360, 387, 462, 504, 576, 581
SexAI	ACCWGGT	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SgrDI	CGTCGACG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	374, 421
StyD4I	CCNGG	5 cut(s)	104, 242, 298, 490, 533
StyI	CCWWGG	2 cut(s)	351, 570
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	3 cut(s)	372, 387, 546
TasI	AATT	2 cut(s)	374, 421
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	6 cut(s)	30, 33, 36, 112, 335, 475
TfiI	GAWTC	1 cut(s)	273
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	511
XapI	RAATTY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	387
ZraI	GACGTC	1 cut(s)	385
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.