Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Reverse (-)

3101097 .. 3102782

Gene Structure 1686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGCAGAAGAACGAGATGGAAAAGGTTGATGATGTGATGTTGCCGGGTTTTCGGTTTCACCCGACCGATGAGGAGCTTGTAGGGTTTTACCTGAAGAGAAAATTCCAGCAGGGGGTTCTTCCCATTGAGCTGATTAAGCAAGTTGACATTTATAAATATGATCCCTGGGATCTTCCAAAGCTGGCAAGTACTGGGGAGAAAGAGTGGTACTTCTACTGCCCGAGGGACCGAAAATACAAGAACAGCACTAGGCCTAATCGCGTCACGGGAGCCGGGTTTTGGAAAGCAACCGGAACAGATCGGCCTGTCTATTCTTCGGAAGGCTCCAAGTGCATAGGTTTAAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCAAAAGGGATCAAAACTGACTGGATGATGCACGAGTTTCGGTTGCCTTCTCTCTCAAATTCAGTTCCACCAAAAAAGCTCTTAGATAAAAGCCTCCCTGCAAATGATTCATGGGCAATTTGCAGGATTTTCAAGAAAACAAACTCCATGGCACAGAGAGCACTTTCTCACTCTTGGGACTCTCAGTTTCCAGAGCCTACGGCAGCTGGTTTATTCACCCAACAGTTCAGCTCAGAGGACATGTCTTGCACAACTGACATGGGATCAACCATGCAGTTTTGGAATAACAATGACTTGCAACAAGCATCTAACACAAACTACTCTTCCTTTGACACTCTTCCTTACAAACCAATCAACCCTACCGTGTCGAAACCCTCCATGTTCGACGGAGAGTTTCCCAACAGCTTCATGTTCTCGCCGGCTGAACTGTCCGGAACTATGAACCCTGCGTTAATCGATGATTTAAGCAACCCCGCAGGGAGCATAGACTTCGATGGTTCACAGCAGCAGTTCGCCGGCTTTTCGATCAGTTTGCAGCAACAAGATCAGATGCAAGGAAACACGGGGACATCAGAAAACGAAGGGGGATTCAGGAAGAACATGAATAGTAGTAGTAACAGTACAAGCCAGTGGGGAAGCAGCAGCATCAGATCAATTGGTTTTCCCTTCAGTTTGGCTTCAGATGATGAGTCTTGGAAGCCAACTCTGCCTTCTTATTCACCACCTTATCCTAGTAGCTATTCTACAAACAAATGCTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

381

Amino Acids

42.86

Weight (kDa)

6.36

Isoelectric Point (pI)

43.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 141	3.7e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccII	CGCG	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	809
AciI	CCGC	1 cut(s)	852
AclWI	GGATC	4 cut(s)	158, 180, 395, 649
AcsI	RAATTY	2 cut(s)	104, 436
AcuI	CTGAAG	3 cut(s)	116, 1030, 1041
AfaI	GTAC	3 cut(s)	193, 212, 1000
AfiI	CCNNNNNNNGG	2 cut(s)	115, 282
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	167
AjuI	GAANNNNNNNTTGG	2 cut(s)	1072, 1104
AluBI	AGCT	9 cut(s)	79, 133, 184, 377, 457, 584, 609, 783, 1116
AluI	AGCT	9 cut(s)	79, 133, 184, 377, 457, 584, 609, 783, 1116
Alw21I	GWGCWC	1 cut(s)	541
AlwI	GGATC	4 cut(s)	158, 180, 395, 649
Ama87I	CYCGRG	1 cut(s)	223
Aor13HI	TCCGGA	1 cut(s)	809
AoxI	GGCC	2 cut(s)	254, 305
ApeKI	GCWGC	6 cut(s)	377, 581, 883, 913, 1017, 1020
ApoI	RAATTY	2 cut(s)	104, 436
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	2 cut(s)	48, 277
AsuHPI	GGTGA	3 cut(s)	53, 586, 1089
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	6 cut(s)	364, 593, 895, 925, 1029, 1032
BccI	CCATC	2 cut(s)	13, 866
BceAI	ACGGC	1 cut(s)	594
BcgI	CGANNNNNNTGC	6 cut(s)	398, 432, 850, 884, 892, 926
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	48, 277
BfaI	CTAG	2 cut(s)	252, 1110
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	6 cut(s)	378, 582, 884, 914, 1018, 1021
BlsI	GCNGC	6 cut(s)	379, 583, 885, 915, 1019, 1022
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	48, 169, 277
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	230, 274, 328
BmrFI	CCNGG	3 cut(s)	48, 169, 277
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	4 cut(s)	396, 692, 918, 1032
BmuI	ACTGGG	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	48, 277
Bsa29I	ATCGAT	1 cut(s)	834
BsaJI	CCNNGG	4 cut(s)	167, 168, 224, 525
BsaWI	WCCGGW	2 cut(s)	293, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 282
Bse118I	RCCGGY	2 cut(s)	796, 893
Bse1I	ACTGG	3 cut(s)	199, 404, 1006
BseAI	TCCGGA	1 cut(s)	809
BseBI	CCWGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	834
BseDI	CCNNGG	4 cut(s)	167, 168, 224, 525
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	115, 282
BseMII	CTCAG	2 cut(s)	575, 624
BseNI	ACTGG	3 cut(s)	199, 404, 1006
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	6 cut(s)	364, 593, 895, 925, 1029, 1032
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	256, 307
BshVI	ATCGAT	1 cut(s)	834
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	6 cut(s)	47, 276, 294, 797, 810, 894
BslFI	GGGAC	4 cut(s)	242, 337, 569, 958
BslI	CCNNNNNNNGG	2 cut(s)	115, 282
BsmFI	GGGAC	4 cut(s)	242, 337, 569, 958
BsnI	GGCC	2 cut(s)	256, 307
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp13I	TCCGGA	1 cut(s)	809
Bsp143I	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	1 cut(s)	852
BspANI	GGCC	2 cut(s)	256, 307
BspCNI	CTCAG	2 cut(s)	574, 623
BspDI	ATCGAT	1 cut(s)	834
BspEI	TCCGGA	1 cut(s)	809
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	230, 274, 328
BspPI	GGATC	4 cut(s)	158, 180, 395, 649
BsrFI	RCCGGY	2 cut(s)	796, 893
BsrI	ACTGG	3 cut(s)	199, 404, 1006
BssAI	RCCGGY	2 cut(s)	796, 893
BssECI	CCNNGG	4 cut(s)	167, 168, 224, 525
BssMI	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
BssSI	CACGAG	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	4 cut(s)	603, 742, 807, 998
Bst6I	CTCTTC	3 cut(s)	92, 706, 720
BstC8I	GCNNGC	3 cut(s)	186, 798, 895
BstDEI	CTNAG	3 cut(s)	460, 561, 610
BstDSI	CCRYGG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	8 cut(s)	166, 175, 304, 390, 644, 906, 925, 1031
BstMBI	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 333, 536, 1084
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	3 cut(s)	46, 167, 275
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	6 cut(s)	364, 593, 895, 925, 1029, 1032
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	834
BsuRI	GGCC	2 cut(s)	256, 307
BsuTUI	ATCGAT	1 cut(s)	834
BtgI	CCRYGG	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	1013
Cac8I	GCNNGC	3 cut(s)	186, 798, 895
Cfr10I	RCCGGY	2 cut(s)	796, 893
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	834
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	192, 211, 999
CviAII	CATG	8 cut(s)	489, 526, 619, 637, 649, 757, 787, 979
CviQI	GTAC	3 cut(s)	192, 211, 999
DdeI	CTNAG	3 cut(s)	460, 561, 610
DpnI	GATC	8 cut(s)	165, 174, 303, 389, 643, 905, 924, 1030
DpnII	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	92, 706, 720
EarI	CTCTTC	3 cut(s)	92, 706, 720
Eco130I	CCWWGG	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	3 cut(s)	116, 1030, 1041
Eco88I	CYCGRG	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
FaqI	GGGAC	4 cut(s)	242, 337, 569, 958
FatI	CATG	8 cut(s)	488, 525, 618, 636, 648, 756, 786, 978
FauI	CCCGC	1 cut(s)	859
Fnu4HI	GCNGC	6 cut(s)	378, 582, 884, 914, 1018, 1021
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	6 cut(s)	378, 582, 884, 914, 1018, 1021
FspBI	CTAG	2 cut(s)	252, 1110
GluI	GCNGC	6 cut(s)	378, 582, 884, 914, 1018, 1021
HaeIII	GGCC	2 cut(s)	256, 307
HapII	CCGG	6 cut(s)	47, 276, 294, 797, 810, 894
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	4 cut(s)	485, 557, 966, 1067
HpaII	CCGG	6 cut(s)	47, 276, 294, 797, 810, 894
HphI	GGTGA	3 cut(s)	53, 586, 1089
Hpy166II	GTNNAC	2 cut(s)	148, 878
Hpy188I	TCNGA	6 cut(s)	322, 613, 927, 952, 1028, 1060
Hpy188III	TCNNGA	4 cut(s)	511, 569, 810, 970
Hpy8I	GTNNAC	2 cut(s)	148, 878
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	5 cut(s)	317, 435, 953, 1054, 1098
HpyCH4III	ACNGT	4 cut(s)	603, 742, 807, 998
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 333, 536, 1084
HpyF3I	CTNAG	3 cut(s)	460, 561, 610
Hsp92II	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
Kpn2I	TCCGGA	1 cut(s)	809
KroI	GCCGGC	2 cut(s)	796, 893
KroNI	GCCGGC	2 cut(s)	798, 895
Kzo9I	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
LmnI	GCTCC	5 cut(s)	4, 76, 272, 332, 858
Lsp1109I	GCAGC	6 cut(s)	364, 593, 895, 925, 1029, 1032
LweI	GCATC	4 cut(s)	396, 692, 918, 1032
MaeI	CTAG	2 cut(s)	252, 1110
MaeIII	GTNAC	2 cut(s)	265, 992
MalI	GATC	8 cut(s)	165, 174, 303, 389, 643, 905, 924, 1030
MboI	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
MboII	GAAGA	8 cut(s)	22, 109, 113, 167, 309, 693, 707, 985
MfeI	CAATTG	1 cut(s)	1032
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	104, 436, 495, 1032
MlyI	GAGTC	2 cut(s)	551, 1076
MnlI	CCTC	6 cut(s)	67, 219, 362, 482, 607, 763
MroI	TCCGGA	1 cut(s)	809
MroNI	GCCGGC	2 cut(s)	796, 893
MseI	TTAA	4 cut(s)	138, 344, 830, 842
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	6 cut(s)	47, 276, 294, 797, 810, 894
MspR9I	CCNGG	3 cut(s)	48, 169, 277
MunI	CAATTG	1 cut(s)	1032
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	139, 333, 536, 1084
NaeI	GCCGGC	2 cut(s)	798, 895
NciI	CCSGG	2 cut(s)	48, 277
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
NgoMIV	GCCGGC	2 cut(s)	796, 893
NlaIII	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
NlaIV	GGNNCC	3 cut(s)	230, 274, 328
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	622
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	256
PciI	ACATGT	1 cut(s)	618
PdiI	GCCGGC	2 cut(s)	798, 895
PfeI	GAWTC	2 cut(s)	485, 966
PkrI	GCNGC	6 cut(s)	379, 583, 885, 915, 1019, 1022
PleI	GAGTC	2 cut(s)	551, 1075
PpsI	GAGTC	2 cut(s)	551, 1075
PscI	ACATGT	1 cut(s)	618
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	230, 274, 328
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	193, 212, 1000
RsaNI	GTAC	3 cut(s)	192, 211, 999
SaqAI	TTAA	4 cut(s)	138, 344, 830, 842
SatI	GCNGC	6 cut(s)	378, 582, 884, 914, 1018, 1021
Sau3AI	GATC	8 cut(s)	163, 172, 301, 387, 641, 903, 922, 1028
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	551, 1076
ScrFI	CCNGG	3 cut(s)	48, 169, 277
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	4 cut(s)	396, 692, 918, 1032
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	4 cut(s)	104, 436, 495, 1032
SseBI	AGGCCT	1 cut(s)	256
SsiI	CCGC	1 cut(s)	852
SspMI	CTAG	2 cut(s)	252, 1110
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	3 cut(s)	46, 167, 275
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	4 cut(s)	603, 742, 807, 998
TaqI	TCGA	5 cut(s)	746, 762, 834, 870, 902
TaqII	GACCGA	2 cut(s)	83, 246
TasI	AATT	4 cut(s)	104, 436, 495, 1032
TatI	WGTACW	2 cut(s)	191, 998
TfiI	GAWTC	2 cut(s)	485, 966
Tru1I	TTAA	4 cut(s)	138, 344, 830, 842
Tru9I	TTAA	4 cut(s)	138, 344, 830, 842
TscAI	CASTG	1 cut(s)	1013
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	6 cut(s)	377, 581, 883, 913, 1017, 1020
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	477, 775, 833, 995
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	1 cut(s)	1013
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	104, 436
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	2 cut(s)	252, 1110
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.