Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013703

Physical Location & Seq

Genomic Coordinates Reverse (-)

4218575 .. 4221076

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGACATCAGTGACCACTATGCAAGGAATCAATGAGAAGATCCTTTCCTTAAATTACAACGAATATAAGGCTGAGATAAAGACTGCTGATGCTCAGAAGTCTTATGAAGACGGGGTGACTGTGTTAGTTACTGGATGTTTAACAGGCAAGGATAACTTGAAAAGGAAATTCGCCCAATCATTTTTTCTTGCCCCTCAAGACAATGGGTTCTTTGTATTGAATGATGTCTTTAGATTTGTGGAAGATGGAGATCTTTTTGAAAACCATTCAGTTAATGAAGTTAATGATGCCGCAACAATCCTCTCAAGCCAGGATCCAGAGCCAACTCATGTTCCTGATCCTCCTGCACCTGATCTGGAAACTACTCAAGTTGAAGAGAATCCAATTATTGTTGAGAAAACTTATGACACATCAGACCATGAGGGACAATATGCTACAGAATCTGACGTGGAACCCCCGTCTTATTCAAATGGGAACGATGTCACTGTGACAGTTGAGCTGGCTTCTACGACAGCCCAAGAGGATAGTTCGAAGAAGTCGTATGCATCAATTGTTAAAGTTCCTAAAGGGAGTCCAGGACCAAGTAAGGTTTATGTGCCTACTAATACTGTTGGAGTGACTTCTAAGAAAGCGGAAACTAATTTGCCTGGGCCAACTGCACCTGCTTCTGTGCCTGAAGCATCAGCCCCAACTAGCACTAGCGCCTTAGAGAGTAGTGATACTAATGAGGAAGTTGAGGGCTATTCTATTTACATAAGGAATTTGCCCTTAAACGTGACGACTGATCAGCTTCAGGAAGAATTCAAGAAATTTGGACCAATAAAGCAAGGAGGCGTCCAAGTCCGAAATAAGAAACTCCAGGGCTACTGTTTTGGATTTGTTGAGTTCGAGTCTTCAAGTTCCATGAATAGTGCCATTCAGGCTTCACCAATCACTATTGGTGGCCGTCAAGCTGTCATCGAGATAAAGAGAACTACCACTCGAGTTGGTAGCAGTGAAAGAGGTAGATTTCCTCCTGCTGGAAGGGGTGGGTTCCGAAATGACAGCTTTAGAGGCCGTGGGAACTATGGCGGTGGCCGGAGCTTCGGCAGAAACGAATATGTGAGAAGGGGCGAATTCTCAGGCCGAGGCAGGGGTGGCCCAGCCGGGCGCAGTGGATATGGTTATCAGGCACGAGGGAGGGGCGGACGCTCAAGTGAACCAAACCAGAATGCTGTTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006807 GO:0006914 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0010494 GO:0016236 GO:0016579 GO:0019538 GO:0032386 GO:0032879 GO:0032991 GO:0034517 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0043021 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051049 GO:0060341 GO:0060627 GO:0060628 GO:0061912 GO:0061919 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1905538 GO:1990861 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTF2 RRM_1

Protein Analysis

409

Amino Acids

44.01

Weight (kDa)

5.34

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTF2	PF02136	3 - 79	8e-20	Nuclear transport factor 2 (NTF2) domain
RRM_1	PF00076	250 - 316	3.8e-13	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g46800 FvH4_6g46800
malus_domestica	MD09G1067300.v1.1 MD17G1060400.v1.1
prunus_persica	Prupe.3G254500_v2.0.a1
pyrus_communis	pycom17g06010
rosa_chinensis	RchiOBHm_Chr2g0165791
rosa_laevigata	RLG00000021554
rosa_multiflora	Rmu_sc0003227.1_g000012
rosa_roxburghii	Rroxscaffold_2G00085520
rosa_rugosa	Rorug02G0517400 Rorug02G0517500 Rorug02G0517600
rosa_samantha	Rh2AG583100 Rh2BG595200 Rh2CG565800 Rh2DG605000
rosa_wichuraiana	Rw2G048640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AciI	CCGC	4 cut(s)	291, 632, 1071, 1185
AclWI	GGATC	4 cut(s)	34, 308, 321, 332
AcoI	YGGCCR	2 cut(s)	943, 1075
AcsI	RAATTY	5 cut(s)	167, 760, 800, 809, 1115
AcuI	CTGAAG	2 cut(s)	696, 776
AcyI	GRCGYC	1 cut(s)	834
AfiI	CCNNNNNNNGG	2 cut(s)	1019, 1132
AgsI	TTSAA	7 cut(s)	160, 220, 260, 374, 468, 805, 897
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	4 cut(s)	309, 574, 646, 858
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	5 cut(s)	499, 790, 953, 1047, 1083
AluI	AGCT	5 cut(s)	499, 790, 953, 1047, 1083
AlwI	GGATC	4 cut(s)	34, 308, 321, 332
AlwNI	CAGNNNCTG	1 cut(s)	443
Ama87I	CYCGRG	1 cut(s)	981
AoxI	GGCC	6 cut(s)	650, 943, 1054, 1075, 1123, 1138
ApoI	RAATTY	5 cut(s)	167, 760, 800, 809, 1115
AspLEI	GCGC	2 cut(s)	704, 1152
AspS9I	GGNCC	4 cut(s)	578, 650, 815, 1139
AsuC2I	CCSGG	1 cut(s)	1147
AsuHPI	GGTGA	2 cut(s)	127, 918
AsuII	TTCGAA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	981
AvaII	GGWCC	2 cut(s)	578, 815
BamHI	GGATCC	1 cut(s)	313
BauI	CACGAG	1 cut(s)	1173
BbsI	GAAGAC	2 cut(s)	114, 885
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	2 cut(s)	930, 1041
BciT130I	CCWGG	4 cut(s)	311, 576, 648, 860
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	1147
BfaI	CTAG	2 cut(s)	693, 699
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	705
BfuAI	ACCTGC	1 cut(s)	670
BglI	GCCNNNNNGGC	1 cut(s)	920
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	5 cut(s)	311, 576, 648, 860, 1147
Bme18I	GGWCC	2 cut(s)	578, 815
BmeT110I	CYCGRG	1 cut(s)	981
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	4 cut(s)	578, 650, 815, 1139
BmiI	GGNNCC	3 cut(s)	315, 453, 1034
BmrFI	CCNGG	5 cut(s)	311, 576, 648, 860, 1147
BmsI	GCATC	4 cut(s)	79, 277, 554, 689
BpiI	GAAGAC	2 cut(s)	114, 885
BpmI	CTGGAG	1 cut(s)	842
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	4 cut(s)	180, 289, 351, 1177
BpuMI	CCSGG	1 cut(s)	1147
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	834
BsaJI	CCNNGG	4 cut(s)	647, 859, 1057, 1126
Bsc4I	CCNNNNNNNGG	2 cut(s)	1019, 1132
Bse1I	ACTGG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	4 cut(s)	311, 576, 648, 860
BseDI	CCNNGG	4 cut(s)	647, 859, 1057, 1126
BseGI	GGATG	1 cut(s)	140
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	1019, 1132
BseMII	CTCAG	3 cut(s)	63, 107, 1134
BseNI	ACTGG	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	1141
BsgI	GTGCAG	2 cut(s)	330, 642
BshFI	GGCC	6 cut(s)	652, 945, 1056, 1077, 1125, 1140
BsiHKCI	CYCGRG	1 cut(s)	981
BsiSI	CCGG	2 cut(s)	1078, 1146
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	1019, 1132
BsmFI	GGGAC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	1216
BsnI	GGCC	6 cut(s)	652, 945, 1056, 1077, 1125, 1140
BsoBI	CYCGRG	1 cut(s)	981
Bsp119I	TTCGAA	1 cut(s)	530
Bsp143I	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
BspACI	CCGC	4 cut(s)	291, 632, 1071, 1185
BspANI	GGCC	6 cut(s)	652, 945, 1056, 1077, 1125, 1140
BspCNI	CTCAG	3 cut(s)	64, 106, 1133
BspLI	GGNNCC	3 cut(s)	315, 453, 1034
BspMI	ACCTGC	1 cut(s)	670
BspPI	GGATC	4 cut(s)	34, 308, 321, 332
BspT104I	TTCGAA	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	4 cut(s)	647, 859, 1057, 1126
BssMI	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
BssNI	GRCGYC	1 cut(s)	834
BssSI	CACGAG	1 cut(s)	1173
Bst2BI	CACGAG	1 cut(s)	1173
Bst2UI	CCWGG	4 cut(s)	311, 576, 648, 860
Bst4CI	ACNGT	5 cut(s)	121, 487, 493, 610, 869
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	834
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	5 cut(s)	72, 93, 624, 706, 1120
BstDSI	CCRYGG	1 cut(s)	1057
BstF5I	GGATG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	705
BstHHI	GCGC	2 cut(s)	704, 1152
BstKTI	GATC	6 cut(s)	42, 253, 316, 340, 355, 787
BstMBI	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
BstMWI	GCNNNNNNNGC	4 cut(s)	920, 1053, 1137, 1220
BstNI	CCWGG	4 cut(s)	311, 576, 648, 860
BstSCI	CCNGG	5 cut(s)	309, 574, 646, 858, 1145
BstSFI	CTRYAG	1 cut(s)	435
BstV2I	GAAGAC	2 cut(s)	114, 885
BstX2I	RGATCY	3 cut(s)	39, 250, 313
BstYI	RGATCY	3 cut(s)	39, 250, 313
BsuRI	GGCC	6 cut(s)	652, 945, 1056, 1077, 1125, 1140
BtgI	CCRYGG	1 cut(s)	1057
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	2 cut(s)	1000, 1159
BtsIMutI	CAGTG	4 cut(s)	15, 483, 1000, 1159
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	501
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	2 cut(s)	704, 1152
Cfr13I	GGNCC	4 cut(s)	578, 650, 815, 1139
CseI	GACGC	2 cut(s)	823, 1197
CspCI	CAANNNNNGTGG	2 cut(s)	967, 1002
CviAII	CATG	3 cut(s)	329, 419, 904
DdeI	CTNAG	5 cut(s)	72, 93, 624, 706, 1120
DpnI	GATC	6 cut(s)	41, 252, 315, 339, 354, 786
DpnII	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
EaeI	YGGCCR	2 cut(s)	943, 1075
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	1200
Eco47I	GGWCC	2 cut(s)	578, 815
Eco57I	CTGAAG	2 cut(s)	696, 776
Eco88I	CYCGRG	1 cut(s)	981
EcoRI	GAATTC	2 cut(s)	800, 1115
EcoRII	CCWGG	4 cut(s)	309, 574, 646, 858
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	3 cut(s)	332, 422, 907
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	3 cut(s)	328, 418, 903
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	2 cut(s)	693, 699
GlaI	GCGC	2 cut(s)	703, 1151
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	1145
GsuI	CTGGAG	1 cut(s)	842
HaeII	RGCGCY	1 cut(s)	705
HaeIII	GGCC	6 cut(s)	652, 945, 1056, 1077, 1125, 1140
HapII	CCGG	2 cut(s)	1078, 1146
HgaI	GACGC	2 cut(s)	823, 1197
HhaI	GCGC	2 cut(s)	704, 1152
Hin1I	GRCGYC	1 cut(s)	834
Hin1II	CATG	3 cut(s)	332, 422, 907
Hin6I	GCGC	2 cut(s)	702, 1150
HinP1I	GCGC	2 cut(s)	702, 1150
HinfI	GANTC	5 cut(s)	27, 379, 440, 571, 890
HpaII	CCGG	2 cut(s)	1078, 1146
HphI	GGTGA	2 cut(s)	127, 918
Hpy166II	GTNNAC	1 cut(s)	1199
Hpy188I	TCNGA	5 cut(s)	96, 415, 445, 845, 1037
Hpy188III	TCNNGA	7 cut(s)	197, 317, 335, 356, 794, 805, 961
Hpy8I	GTNNAC	1 cut(s)	1199
HpyAV	CCTTC	2 cut(s)	1017, 1101
HpyCH4III	ACNGT	5 cut(s)	121, 487, 493, 610, 869
HpyCH4IV	ACGT	2 cut(s)	447, 774
HpyCH4V	TGCA	5 cut(s)	22, 347, 545, 659, 1223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	920, 1053, 1137, 1220
HpyF3I	CTNAG	5 cut(s)	72, 93, 624, 706, 1120
HpySE526I	ACGT	2 cut(s)	447, 774
Hsp92I	GRCGYC	1 cut(s)	834
Hsp92II	CATG	3 cut(s)	332, 422, 907
HspAI	GCGC	2 cut(s)	702, 1150
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
LmnI	GCTCC	1 cut(s)	1080
LweI	GCATC	4 cut(s)	79, 277, 554, 689
MaeI	CTAG	2 cut(s)	693, 699
MaeII	ACGT	2 cut(s)	447, 774
MaeIII	GTNAC	7 cut(s)	10, 115, 127, 481, 487, 616, 775
MalI	GATC	6 cut(s)	41, 252, 315, 339, 354, 786
MboI	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
MboII	GAAGA	7 cut(s)	49, 119, 254, 386, 544, 809, 885
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	3 cut(s)	39, 250, 313
MluCI	AATT	9 cut(s)	52, 167, 384, 549, 640, 760, 800, 809, 1115
MlyI	GAGTC	2 cut(s)	580, 899
MmeI	TCCRAC	1 cut(s)	592
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	6 cut(s)	50, 140, 273, 282, 555, 770
MspI	CCGG	2 cut(s)	1078, 1146
MspR9I	CCNGG	5 cut(s)	311, 576, 648, 860, 1147
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	1216
MvaI	CCWGG	4 cut(s)	311, 576, 648, 860
MwoI	GCNNNNNNNGC	4 cut(s)	920, 1053, 1137, 1220
NciI	CCSGG	1 cut(s)	1147
NdeII	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
NlaIII	CATG	3 cut(s)	332, 422, 907
NlaIV	GGNNCC	3 cut(s)	315, 453, 1034
NmeAIII	GCCGAG	1 cut(s)	1151
NmuCI	GTSAC	6 cut(s)	10, 115, 481, 487, 616, 775
NsiI	ATGCAT	1 cut(s)	547
NspV	TTCGAA	1 cut(s)	530
PaeR7I	CTCGAG	1 cut(s)	981
PaqCI	CACCTGC	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	2 cut(s)	536, 1092
PctI	GAATGC	1 cut(s)	1216
PfeI	GAWTC	3 cut(s)	27, 379, 440
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	579, 898
PpsI	GAGTC	2 cut(s)	579, 898
Psp6I	CCWGG	4 cut(s)	309, 574, 646, 858
PspFI	CCCAGC	1 cut(s)	1141
PspGI	CCWGG	4 cut(s)	309, 574, 646, 858
PspN4I	GGNNCC	3 cut(s)	315, 453, 1034
PspPI	GGNCC	4 cut(s)	578, 650, 815, 1139
PspXI	VCTCGAGB	1 cut(s)	981
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	3 cut(s)	39, 250, 313
SaqAI	TTAA	6 cut(s)	50, 140, 273, 282, 555, 770
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	6 cut(s)	39, 250, 313, 337, 352, 784
Sau96I	GGNCC	4 cut(s)	578, 650, 815, 1139
SchI	GAGTC	2 cut(s)	580, 899
ScrFI	CCNGG	5 cut(s)	311, 576, 648, 860, 1147
SfaNI	GCATC	4 cut(s)	79, 277, 554, 689
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	981
SfuI	TTCGAA	1 cut(s)	530
SinI	GGWCC	2 cut(s)	578, 815
SlaI	CTCGAG	1 cut(s)	981
SmlI	CTYRAG	5 cut(s)	195, 304, 366, 981, 1192
SmoI	CTYRAG	5 cut(s)	195, 304, 366, 981, 1192
Sse9I	AATT	9 cut(s)	52, 167, 384, 549, 640, 760, 800, 809, 1115
SsiI	CCGC	4 cut(s)	291, 632, 1071, 1185
SspMI	CTAG	2 cut(s)	693, 699
StyD4I	CCNGG	5 cut(s)	309, 574, 646, 858, 1145
TaaI	ACNGT	5 cut(s)	121, 487, 493, 610, 869
TaiI	ACGT	2 cut(s)	450, 777
TaqI	TCGA	4 cut(s)	530, 888, 960, 982
TasI	AATT	9 cut(s)	52, 167, 384, 549, 640, 760, 800, 809, 1115
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	3 cut(s)	27, 379, 440
Tru1I	TTAA	6 cut(s)	50, 140, 273, 282, 555, 770
Tru9I	TTAA	6 cut(s)	50, 140, 273, 282, 555, 770
TscAI	CASTG	4 cut(s)	15, 490, 1000, 1159
TseFI	GTSAC	6 cut(s)	10, 115, 481, 487, 616, 775
Tsp45I	GTSAC	6 cut(s)	10, 115, 481, 487, 616, 775
TspDTI	ATGAA	3 cut(s)	120, 291, 920
TspRI	CASTG	4 cut(s)	15, 490, 1000, 1159
VpaK11BI	GGWCC	2 cut(s)	578, 815
XapI	RAATTY	5 cut(s)	167, 760, 800, 809, 1115
XhoI	CTCGAG	1 cut(s)	981
XspI	CTAG	2 cut(s)	693, 699
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.