pycom17g07420

transmembrane ascorbate ferrireductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0017157
Physical Location & Seq
Forward (+)
5339360 .. 5341183
1824 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07420.4

Sequence Viewer

Length: 702 bp
ATGGCGGTTCCGGTGGTCCCGTTCCCGATCTTGAATGCAGTGAGGGTTATAGGAGTGATAGTGGCGGCTCTGGTGCTCACGTGGAACGTTCATTTCCGCGGTGGATTGGCTCTCATTTCCGATGACAAAAGTCTTATTTTCAATGTTCATCCGGTATTAATGGTGATTGGGTTGATACTGCTCAATGGAGAAGCCATGCTAGCATACAAGACGGTTTCAGGAACAAAAAACTTGAAAAAATTAGTTCATCTTACACTACAATTCCTTGCCTTTTGCTTAAGCATCATAGGCGTATGGGCTGCTTTGAAGTTCCACAACGATAAGGGCATTGACAACTTCTACAGTCTGCATTCCTGGTTGGGTCTAGCTTGCTTATTCCTCTTCACCCTCCAGTGGGCTGCTGGATTTGTAACGTATTGGTTCCCAGGAGGCTCGAAACACAGCAGAGCTAACTTGCTGCCATGGCATGTATTTTTCGGTGTTTATACTTACGCCCTTGCTGTTGTTACAGTAACTACTGGTATTTTAGAAAAAGTCACCTTCCTCCAAACCCACCAAGTAATCTCACGCTATTCAACCGAGGCTTTGCTCGTGAACTCTCTCGGAATATTGGTCGTTGTTCTGGGAGGTTTTGTTATCCTTGCCGTTATTACTCCGATGAATAATAATAGAGGTGATGTTCTCAGAGGACCAATAGAGTAA

Protein Analysis

234

Amino Acids

25.59

Weight (kDa)

9.48

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017157)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38630
fragaria_vesca FvH4_6g45440 FvH4_6g45440 FvH4_6g45440
malus_domestica MD17G1073300.v1.1
prunus_persica Prupe.3G240600_v2.0.a1
pyrus_communis pycom17g07420
rosa_chinensis RchiOBHm_Chr2g0163271
rosa_laevigata RLG00000021387
rosa_roxburghii Rroxscaffold_2G00087420
rosa_rugosa Rorug02G0501900
rosa_samantha Rh2BG580800
rosa_wichuraiana Rw2G047050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 5, 65, 97, 99
AclI AACGTT 1 cut(s) 87
AcvI CACGTG 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 393, 394
AflII CTTAAG 1 cut(s) 277
AgsI TTSAA 5 cut(s) 34, 142, 235, 307, 576
AjnI CCWGG 2 cut(s) 353, 424
AluBI AGCT 2 cut(s) 368, 449
AluI AGCT 2 cut(s) 368, 449
Alw21I GWGCWC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 299, 398, 457
AseI ATTAAT 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 16, 689
AsuHPI GGTGA 4 cut(s) 175, 376, 529, 686
AsuNHI GCTAGC 1 cut(s) 199
AvaII GGWCC 2 cut(s) 16, 689
BauI CACGAG 1 cut(s) 590
BbrPI CACGTG 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 3 cut(s) 286, 385, 444
BceAI ACGGC 1 cut(s) 629
BciT130I CCWGG 2 cut(s) 355, 426
BfaI CTAG 2 cut(s) 200, 365
BfmI CTRYAG 1 cut(s) 340
BfrI CTTAAG 1 cut(s) 277
BisI GCNGC 4 cut(s) 66, 300, 399, 458
BlsI GCNGC 4 cut(s) 67, 301, 400, 459
Bme1390I CCNGG 2 cut(s) 355, 426
Bme18I GGWCC 2 cut(s) 16, 689
BmgT120I GGNCC 2 cut(s) 16, 689
BmiI GGNNCC 3 cut(s) 9, 18, 422
BmrFI CCNGG 2 cut(s) 355, 426
BmsI GCATC 1 cut(s) 291
BmtI GCTAGC 1 cut(s) 203
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 374
BsaAI YACGTR 1 cut(s) 81
BsaJI CCNNGG 4 cut(s) 97, 424, 461, 579
BsaWI WCCGGW 2 cut(s) 10, 151
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 618, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 394
Bse1I ACTGG 2 cut(s) 391, 523
BseBI CCWGG 2 cut(s) 355, 426
BseDI CCNNGG 4 cut(s) 97, 424, 461, 579
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 2 cut(s) 393, 394
BseMII CTCAG 1 cut(s) 697
BseNI ACTGG 2 cut(s) 391, 523
BseXI GCAGC 3 cut(s) 286, 385, 444
Bsh1236I CGCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 11, 152
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 2 cut(s) 393, 394
BsmFI GGGAC 1 cut(s) 2
BsmI GAATGC 2 cut(s) 40, 349
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 4 cut(s) 5, 65, 97, 99
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 3 cut(s) 9, 18, 422
BspOI GCTAGC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 277
BsrI ACTGG 2 cut(s) 391, 523
BssECI CCNNGG 4 cut(s) 97, 424, 461, 579
BssMI GATC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 590
BssT1I CCWWGG 1 cut(s) 461
Bst2BI CACGAG 1 cut(s) 590
Bst2UI CCWGG 2 cut(s) 355, 426
Bst4CI ACNGT 3 cut(s) 214, 344, 511
Bst6I CTCTTC 1 cut(s) 386
BstAFI CTTAAG 1 cut(s) 277
BstBAI YACGTR 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 201, 370
BstDEI CTNAG 1 cut(s) 683
BstDSI CCRYGG 2 cut(s) 97, 461
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 200, 288, 463
BstNI CCWGG 2 cut(s) 355, 426
BstNSI RCATGY 1 cut(s) 470
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 353, 424
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 286, 385, 444
BtgI CCRYGG 2 cut(s) 97, 461
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 398
Cac8I GCNNGC 2 cut(s) 201, 370
Cfr13I GGNCC 2 cut(s) 16, 689
Cfr42I CCGCGG 1 cut(s) 100
CviAII CATG 3 cut(s) 196, 462, 467
CviJI RGCY 9 cut(s) 68, 110, 194, 299, 368, 398, 432, 449, 584
CviKI_1 RGCY 9 cut(s) 68, 110, 194, 299, 368, 398, 432, 449, 584
DdeI CTNAG 1 cut(s) 683
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 16, 689
Eco72I CACGTG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 353, 424
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 3 cut(s) 199, 465, 470
FaiI YATR 8 cut(s) 50, 197, 205, 287, 295, 463, 468, 486
FaqI GGGAC 1 cut(s) 2
FatI CATG 3 cut(s) 195, 461, 466
Fnu4HI GCNGC 4 cut(s) 66, 300, 399, 458
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 66, 300, 399, 458
FspBI CTAG 2 cut(s) 200, 365
GluI GCNGC 4 cut(s) 66, 300, 399, 458
GsuI CTGGAG 1 cut(s) 374
HapII CCGG 2 cut(s) 11, 152
Hin1II CATG 3 cut(s) 199, 465, 470
HpaII CCGG 2 cut(s) 11, 152
HphI GGTGA 4 cut(s) 175, 376, 529, 686
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 4 cut(s) 121, 605, 657, 686
Hpy188III TCNNGA 4 cut(s) 25, 31, 219, 592
Hpy8I GTNNAC 1 cut(s) 595
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 3 cut(s) 214, 344, 511
HpyCH4IV ACGT 3 cut(s) 80, 87, 413
HpyCH4V TGCA 2 cut(s) 38, 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 288, 463
HpyF3I CTNAG 1 cut(s) 683
HpySE526I ACGT 3 cut(s) 80, 87, 413
Hsp92II CATG 3 cut(s) 199, 465, 470
KspI CCGCGG 1 cut(s) 100
Kzo9I GATC 1 cut(s) 27
Lsp1109I GCAGC 3 cut(s) 286, 385, 444
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 200, 365
MaeII ACGT 3 cut(s) 80, 87, 413
MaeIII GTNAC 4 cut(s) 409, 505, 511, 535
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 239, 260
MnlI CCTC 9 cut(s) 36, 389, 398, 422, 554, 574, 620, 665, 680
MseI TTAA 2 cut(s) 158, 278
MspA1I CMGCKG 1 cut(s) 99
MspCI CTTAAG 1 cut(s) 277
MspI CCGG 2 cut(s) 11, 152
MspR9I CCNGG 2 cut(s) 355, 426
Mva1269I GAATGC 2 cut(s) 40, 349
MvaI CCWGG 2 cut(s) 355, 426
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 200, 288, 463
NcoI CCATGG 1 cut(s) 461
NdeII GATC 1 cut(s) 27
NheI GCTAGC 1 cut(s) 199
NlaIII CATG 3 cut(s) 199, 465, 470
NlaIV GGNNCC 3 cut(s) 9, 18, 422
NmuCI GTSAC 1 cut(s) 535
NspI RCATGY 1 cut(s) 470
PctI GAATGC 2 cut(s) 40, 349
PkrI GCNGC 4 cut(s) 67, 301, 400, 459
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 81
PshAI GACNNNNGTC 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 158
Psp1406I AACGTT 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 353, 424
PspCI CACGTG 1 cut(s) 81
PspGI CCWGG 2 cut(s) 353, 424
PspN4I GGNNCC 3 cut(s) 9, 18, 422
PspPI GGNCC 2 cut(s) 16, 689
SacII CCGCGG 1 cut(s) 100
SaqAI TTAA 2 cut(s) 158, 278
SatI GCNGC 4 cut(s) 66, 300, 399, 458
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 2 cut(s) 16, 689
ScrFI CCNGG 2 cut(s) 355, 426
SduI GDGCHC 1 cut(s) 78
SetI ASST 8 cut(s) 83, 90, 370, 416, 451, 542, 631, 676
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 340
Sfr303I CCGCGG 1 cut(s) 100
SgrBI CCGCGG 1 cut(s) 100
SinI GGWCC 2 cut(s) 16, 689
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 2 cut(s) 239, 260
SsiI CCGC 4 cut(s) 5, 65, 97, 99
SspI AATATT 1 cut(s) 609
SspMI CTAG 2 cut(s) 200, 365
StyD4I CCNGG 2 cut(s) 353, 424
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 3 cut(s) 214, 344, 511
TaiI ACGT 3 cut(s) 83, 90, 416
TaqI TCGA 1 cut(s) 434
TasI AATT 2 cut(s) 239, 260
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 158, 278
Tru9I TTAA 2 cut(s) 158, 278
TscAI CASTG 2 cut(s) 45, 398
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 3 cut(s) 299, 398, 457
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 4 cut(s) 80, 137, 236, 674
TspRI CASTG 2 cut(s) 45, 398
Vha464I CTTAAG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 16, 689
VspI ATTAAT 1 cut(s) 158
XceI RCATGY 1 cut(s) 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XspI CTAG 2 cut(s) 200, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.