pycom17g08130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012186
Physical Location & Seq
Forward (+)
6064647 .. 6066568
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1020 bp
ATGGCGACTTCCATTCCCACCATCTCCGCTCCAACCCCCTCCGTTCTCAGACTCAAAGTCACTTCTTTTTCTCCCCCCAGAATCCAACCTCATACCCAAACAATCCCTTTTCGCAGTTTACCCAAATTCCAATGTTTGAACCGAATACAAGCTCAGAATTTTCCTGGGTTTTTGTTTGAGAGAAAGTTGAGGGTTCGTGCGAGTGTGAAAAATGAGGGTGTTGATGCAGCTGAGGAGGAGAGCAGAGGGGAGAGTACTATGCCTGAGCGGTTCAGGTACTTGACCAAGGAAGCTCCTGACCCTCCTGTCAGGTGGCCTTGGCTTGTAGCATTGGTCTTCCTTATCTATGCATGGAGAGCTGTCTTGCTGGAATTAGCTAACTGGAGAAAGGCTGCTGAGGGCGTTGTCCGTTTTGTGGGATACCTTTTGAAACTTATCCTGGCTCTAATCTTTCATTTCATTGGAGATCCCATTACTTCCGTGATCAGATTCATAGAAACAACATTGTATGCCATACGCTCTTTCTACTCTGGCATAGTGGCATACGCTCCAATTCCAGAGTTGACGACAGTGATCATACTTGCATCAACTGTTCTTGCTATCGCAGAAGCTGTTGTTCCAACTGCTGTAAACTGTCAACCTTTTCTTCTCACAGCATCTGGTGTAGTAGGCTACGCAGCAGTGGCAGGTTACATCTCAGAGCCTTTATTCTGGACGATTCTAGTAGGGTTCTACGGTTACTCACGATTAGTTAAAAAGAGGGATGATATTACGTCTGCATTGCCTGCGGCAGCTGTGATGTCTGCCATAGGAGAACCATGGGTTAGAGTTTTGGTGATCGCATCGTATCTGGCCTTGGCCATTTTTCATCACTCAAAGAAGGTATCAGATACGGAGGAGGAAATTGTAGTGGCTAACAGGAAGCTTCCAATGCCCTTGCTTGGTGCAGGTTTAGCCATTGGAATTCGTCTTGCTGCTAAGTGGGCTGGCTACCGGCATTTGACATGGATGATAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

37.61

Weight (kDa)

9.69

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtTam38 PF25114 74 - 339 3.4e-139 AtTam38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G28210
fragaria_vesca FvH4_6g44760
malus_domestica MD09G1093800.v1.1 MD17G1083500.v1.1
prunus_persica Prupe.3G231600_v2.0.a1
pyrus_communis pycom09g01900 pycom17g08130
rosa_chinensis RchiOBHm_Chr2g0161911
rosa_laevigata RLG00000021306
rosa_multiflora Rmu_sc0008565.1_g000006 Rmu_sc0008565.1_g000007 Rmu_sc0018381.1_g000007
rosa_roxburghii Rroxscaffold_2G00088470
rosa_rugosa Rorug02G0493100
rosa_samantha Rh2AG559000 Rh2BG572300 Rh2CG542700 Rh2DG582200
rosa_wichuraiana Rw2G046270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
Acc36I ACCTGC 2 cut(s) 677, 938
AccBSI CCGCTC 2 cut(s) 29, 268
AciI CCGC 3 cut(s) 27, 268, 788
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 3 cut(s) 125, 157, 963
AfaI GTAC 2 cut(s) 256, 278
AfiI CCNNNNNNNGG 2 cut(s) 415, 941
AgsI TTSAA 2 cut(s) 139, 430
AhdI GACNNNNNGTC 1 cut(s) 56
AjnI CCWGG 2 cut(s) 163, 438
AluBI AGCT 8 cut(s) 152, 230, 293, 359, 377, 611, 794, 925
AluI AGCT 8 cut(s) 152, 230, 293, 359, 377, 611, 794, 925
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 2 cut(s) 611, 659
AoxI GGCC 3 cut(s) 314, 852, 858
ApeKI GCWGC 5 cut(s) 227, 392, 677, 791, 974
ApoI RAATTY 3 cut(s) 125, 157, 963
AsuHPI GGTGA 1 cut(s) 847
BalI TGGCCA 1 cut(s) 860
BbsI GAAGAC 1 cut(s) 328
BbvCI CCTCAGC 2 cut(s) 231, 396
BbvI GCAGC 5 cut(s) 239, 379, 689, 803, 961
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 165, 440
BciVI GTATCC 1 cut(s) 413
BclI TGATCA 2 cut(s) 483, 573
BfaI CTAG 1 cut(s) 722
BfuAI ACCTGC 2 cut(s) 677, 938
BfuI GTATCC 1 cut(s) 413
BisI GCNGC 6 cut(s) 228, 393, 678, 789, 792, 975
BlsI GCNGC 6 cut(s) 229, 394, 679, 790, 793, 976
BmcAI AGTACT 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 165, 440
BmeRI GACNNNNNGTC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 165, 440
BmsI GCATC 4 cut(s) 214, 593, 665, 851
BpiI GAAGAC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 3 cut(s) 231, 264, 396
BsaJI CCNNGG 5 cut(s) 164, 285, 317, 818, 855
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 941
Bse118I RCCGGY 1 cut(s) 993
Bse1I ACTGG 1 cut(s) 386
Bse3DI GCAATG 1 cut(s) 779
BseBI CCWGG 2 cut(s) 165, 440
BseDI CCNNGG 5 cut(s) 164, 285, 317, 818, 855
BseGI GGATG 2 cut(s) 769, 1014
BseLI CCNNNNNNNGG 2 cut(s) 415, 941
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 6 cut(s) 61, 167, 222, 255, 387, 711
BseNI ACTGG 1 cut(s) 386
BseRI GAGGAG 3 cut(s) 248, 251, 911
BseXI GCAGC 5 cut(s) 239, 379, 689, 803, 961
BsgI GTGCAG 1 cut(s) 966
BshFI GGCC 3 cut(s) 316, 854, 860
BsiSI CCGG 1 cut(s) 994
BslI CCNNNNNNNGG 2 cut(s) 415, 941
BsnI GGCC 3 cut(s) 316, 854, 860
Bsp143I GATC 4 cut(s) 466, 483, 573, 837
Bsp19I CCATGG 1 cut(s) 818
BspACI CCGC 3 cut(s) 27, 268, 788
BspANI GGCC 3 cut(s) 316, 854, 860
BspCNI CTCAG 6 cut(s) 60, 166, 223, 256, 388, 710
BspMI ACCTGC 2 cut(s) 677, 938
BspPI GGATC 1 cut(s) 461
BsrBI CCGCTC 2 cut(s) 29, 268
BsrDI GCAATG 1 cut(s) 779
BsrFI RCCGGY 1 cut(s) 993
BsrI ACTGG 1 cut(s) 386
BssAI RCCGGY 1 cut(s) 993
BssECI CCNNGG 5 cut(s) 164, 285, 317, 818, 855
BssMI GATC 4 cut(s) 466, 483, 573, 837
BssT1I CCWWGG 4 cut(s) 285, 317, 818, 855
Bst2UI CCWGG 2 cut(s) 165, 440
Bst4CI ACNGT 4 cut(s) 571, 592, 635, 737
BstAPI GCANNNNNTGC 1 cut(s) 785
BstC8I GCNNGC 2 cut(s) 786, 988
BstDEI CTNAG 7 cut(s) 47, 153, 231, 264, 396, 697, 978
BstDSI CCRYGG 1 cut(s) 818
BstF5I GGATG 2 cut(s) 769, 1014
BstKTI GATC 4 cut(s) 469, 486, 576, 840
BstMBI GATC 4 cut(s) 466, 483, 573, 837
BstMWI GCNNNNNNNGC 6 cut(s) 356, 683, 785, 931, 953, 983
BstNI CCWGG 2 cut(s) 165, 440
BstSCI CCNGG 2 cut(s) 163, 438
BstV1I GCAGC 5 cut(s) 239, 379, 689, 803, 961
BstV2I GAAGAC 1 cut(s) 328
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuI GTATCC 1 cut(s) 413
BsuRI GGCC 3 cut(s) 316, 854, 860
BtgI CCRYGG 1 cut(s) 818
BtsCI GGATG 2 cut(s) 769, 1014
BtsI GCAGTG 1 cut(s) 687
BtsIMutI CAGTG 2 cut(s) 576, 687
BveI ACCTGC 2 cut(s) 677, 938
Cac8I GCNNGC 2 cut(s) 786, 988
CaiI CAGNNNCTG 2 cut(s) 611, 659
Cfr10I RCCGGY 1 cut(s) 993
Csp6I GTAC 2 cut(s) 255, 277
CviAII CATG 3 cut(s) 351, 819, 1005
CviQI GTAC 2 cut(s) 255, 277
DdeI CTNAG 7 cut(s) 47, 153, 231, 264, 396, 697, 978
DpnI GATC 4 cut(s) 468, 485, 575, 839
DpnII GATC 4 cut(s) 466, 483, 573, 837
DrdI GACNNNNNNGTC 1 cut(s) 305
DriI GACNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 305
EaeI YGGCCR 1 cut(s) 858
Eam1105I GACNNNNNGTC 1 cut(s) 56
Eco130I CCWWGG 4 cut(s) 285, 317, 818, 855
EcoRI GAATTC 1 cut(s) 963
EcoRII CCWGG 2 cut(s) 163, 438
EcoT14I CCWWGG 4 cut(s) 285, 317, 818, 855
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 4 cut(s) 285, 317, 818, 855
FaeI CATG 3 cut(s) 354, 822, 1008
FatI CATG 3 cut(s) 350, 818, 1004
FbaI TGATCA 2 cut(s) 483, 573
Fnu4HI GCNGC 6 cut(s) 228, 393, 678, 789, 792, 975
FokI GGATG 1 cut(s) 776
Fsp4HI GCNGC 6 cut(s) 228, 393, 678, 789, 792, 975
FspBI CTAG 1 cut(s) 722
GluI GCNGC 6 cut(s) 228, 393, 678, 789, 792, 975
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 3 cut(s) 316, 854, 860
HapII CCGG 1 cut(s) 994
Hin1II CATG 3 cut(s) 354, 822, 1008
HincII GTYRAC 2 cut(s) 564, 638
HindII GTYRAC 2 cut(s) 564, 638
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 4 cut(s) 51, 81, 489, 718
HpaII CCGG 1 cut(s) 994
HphI GGTGA 1 cut(s) 847
Hpy166II GTNNAC 4 cut(s) 119, 564, 631, 638
Hpy188I TCNGA 5 cut(s) 50, 156, 488, 700, 889
Hpy188III TCNNGA 4 cut(s) 296, 557, 712, 744
Hpy8I GTNNAC 4 cut(s) 119, 564, 631, 638
HpyAV CCTTC 1 cut(s) 874
HpyCH4III ACNGT 4 cut(s) 571, 592, 635, 737
HpyCH4IV ACGT 1 cut(s) 773
HpyCH4V TGCA 5 cut(s) 227, 350, 584, 779, 947
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 683, 785, 931, 953, 983
HpyF3I CTNAG 7 cut(s) 47, 153, 231, 264, 396, 697, 978
HpySE526I ACGT 1 cut(s) 773
Hsp92II CATG 3 cut(s) 354, 822, 1008
Ksp22I TGATCA 2 cut(s) 483, 573
Kzo9I GATC 4 cut(s) 466, 483, 573, 837
LmnI GCTCC 3 cut(s) 34, 298, 553
Lsp1109I GCAGC 5 cut(s) 239, 379, 689, 803, 961
LweI GCATC 4 cut(s) 214, 593, 665, 851
MaeI CTAG 1 cut(s) 722
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 3 cut(s) 58, 689, 737
MalI GATC 4 cut(s) 468, 485, 575, 839
MbiI CCGCTC 2 cut(s) 29, 268
MboI GATC 4 cut(s) 466, 483, 573, 837
MboII GAAGA 2 cut(s) 328, 638
MflI RGATCY 1 cut(s) 466
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 6 cut(s) 125, 157, 371, 552, 903, 963
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 3 cut(s) 56, 109, 644
Mox20I TGGCCA 1 cut(s) 860
Mph1103I ATGCAT 1 cut(s) 352
MscI TGGCCA 1 cut(s) 860
MseI TTAA 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 2 cut(s) 230, 794
MspI CCGG 1 cut(s) 994
MspR9I CCNGG 2 cut(s) 165, 440
MvaI CCWGG 2 cut(s) 165, 440
MwoI GCNNNNNNNGC 6 cut(s) 356, 683, 785, 931, 953, 983
NcoI CCATGG 1 cut(s) 818
NdeII GATC 4 cut(s) 466, 483, 573, 837
NlaIII CATG 3 cut(s) 354, 822, 1008
NmuCI GTSAC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 352
PfeI GAWTC 3 cut(s) 81, 489, 718
PkrI GCNGC 6 cut(s) 229, 394, 679, 790, 793, 976
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 163, 438
PspGI CCWGG 2 cut(s) 163, 438
PstNI CAGNNNCTG 2 cut(s) 611, 659
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 2 cut(s) 230, 794
RsaI GTAC 2 cut(s) 256, 278
RsaNI GTAC 2 cut(s) 255, 277
SaqAI TTAA 1 cut(s) 753
SatI GCNGC 6 cut(s) 228, 393, 678, 789, 792, 975
Sau3AI GATC 4 cut(s) 466, 483, 573, 837
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 2 cut(s) 165, 440
SfaNI GCATC 4 cut(s) 214, 593, 665, 851
Sse9I AATT 6 cut(s) 125, 157, 371, 552, 903, 963
SsiI CCGC 3 cut(s) 27, 268, 788
SspMI CTAG 1 cut(s) 722
StyD4I CCNGG 2 cut(s) 163, 438
StyI CCWWGG 4 cut(s) 285, 317, 818, 855
TaaI ACNGT 4 cut(s) 571, 592, 635, 737
TaiI ACGT 1 cut(s) 776
TasI AATT 6 cut(s) 125, 157, 371, 552, 903, 963
TatI WGTACW 1 cut(s) 254
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 3 cut(s) 81, 489, 718
Tru1I TTAA 1 cut(s) 753
Tru9I TTAA 1 cut(s) 753
TscAI CASTG 2 cut(s) 576, 687
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 5 cut(s) 227, 392, 677, 791, 974
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 443, 448, 481, 857
TspGWI ACGGA 4 cut(s) 31, 398, 469, 908
TspRI CASTG 2 cut(s) 576, 687
XapI RAATTY 3 cut(s) 125, 157, 963
XspI CTAG 1 cut(s) 722
ZrmI AGTACT 1 cut(s) 256
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.