pycom17g08420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016374
Physical Location & Seq
Forward (+)
6299472 .. 6300405
934 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 840 bp
ATGAAGAAAAACGTTTCGAAGTCAAAACCCAAATTTCTGCACTGTTTTCGACCGGTGGACGTGGACATGGTGCTCGAGACCAAAGCTTCCTGGAGGAGACAGGTCCGAACTGTTGAATCCAGGGAGGACAAGAAGGCAGCTCTGCTGACGAAAACAATGTCTCTGGACAGAGGGTGTTCTTCTCCGGCAGATTCTGTGAACTCGAATATGCCTCCTCGTCCGAACAAAACTTTTTCCAAGGCGGTGAAAGCCGTGGTGTTCGAAACAATCTTGGCCAAGACAGCTCGTGATCGGAAAGTTTGCCGGCGGGACTCGTTCGGATCAAAGCGGTGTTTTTCGTTCAGAAATGAGGCGTCCCTGAATTTGGGAGGCGATGAGTCGGTGAAAAAAATTGAAGAAACAAAGCCAAATTCTGAGATGTCGTTACATTCTCGTTCTTCCAGTTCATCATCATCCGCATTATCTTCTTCGAGTTCGGTTTCGGAATCCGAAAGGTTGTCCAAAACTCTCTTGGACCCGACGAAACAGAGCCTCGGGAATCCTCACAACCCCGCCGCGAAACCGAAGAACACGAAAGTGGGGTCCTACTGTTTCAACTCTGGAACATATTTTCTTCTCATCAGCCTTGCAGTGACGGTATTTTGGGGCAAGGCGATTGCAATCCTTGTCTCATCAATTTGGCTCTACTTTTTTCCGTGGCAGAGTTCGATTACAATCTCGCCGGAATATGTGAGGAGGTGGTCGGAGGCGGAGTGTAGGGATAATAACAAGAGGGTAATTATGGAAGGGTTTATTGATAGGATGAACCACCACCACCAGCAGACAGAGAGGGGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

31.46

Weight (kDa)

9.88

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 557
AciI CCGC 7 cut(s) 242, 307, 328, 456, 552, 555, 749
AclI AACGTT 1 cut(s) 12
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 32, 361, 409
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 364
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 116, 395, 595
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 2 cut(s) 89, 119
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 3 cut(s) 86, 140, 284
AluI AGCT 3 cut(s) 86, 140, 284
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 4 cut(s) 71, 91, 165, 673
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 2 cut(s) 74, 533
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 3 cut(s) 32, 361, 409
ArsI GACNNNNNNTTYG 4 cut(s) 143, 175, 566, 598
AsiGI ACCGGT 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 103, 514, 582
AsuHPI GGTGA 2 cut(s) 256, 394
AsuII TTCGAA 2 cut(s) 17, 261
AvaI CYCGRG 2 cut(s) 74, 533
AvaII GGWCC 3 cut(s) 103, 514, 582
BalI TGGCCA 1 cut(s) 275
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 149
BceAI ACGGC 1 cut(s) 236
BcgI CGANNNNNNTGC 2 cut(s) 29, 63
BciT130I CCWGG 2 cut(s) 91, 121
BcoDI GTCTC 4 cut(s) 71, 91, 165, 673
BisI GCNGC 2 cut(s) 138, 555
BlsI GCNGC 2 cut(s) 139, 556
Bme1390I CCNGG 2 cut(s) 91, 121
Bme18I GGWCC 3 cut(s) 103, 514, 582
BmeT110I CYCGRG 2 cut(s) 74, 533
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 103, 514, 582
BmiI GGNNCC 2 cut(s) 516, 583
BmrFI CCNGG 2 cut(s) 91, 121
BpmI CTGGAG 1 cut(s) 112
Bpu14I TTCGAA 2 cut(s) 17, 261
BsaBI GATNNNNATC 2 cut(s) 659, 713
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 120, 237, 252, 532, 695
BsaWI WCCGGW 1 cut(s) 52
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 2 cut(s) 52, 303
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 2 cut(s) 659, 713
BseBI CCWGG 2 cut(s) 91, 121
BseDI CCNNGG 5 cut(s) 120, 237, 252, 532, 695
BseGI GGATG 2 cut(s) 452, 807
BseJI GATNNNNATC 2 cut(s) 659, 713
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 3 cut(s) 109, 204, 748
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 275
BshTI ACCGGT 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 2 cut(s) 74, 533
BsiSI CCGG 4 cut(s) 53, 185, 304, 722
BslFI GGGAC 2 cut(s) 323, 340
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 4 cut(s) 71, 91, 165, 673
BsmFI GGGAC 2 cut(s) 323, 340
BsnI GGCC 1 cut(s) 275
Bso31I GGTCTC 1 cut(s) 71
BsoBI CYCGRG 2 cut(s) 74, 533
Bsp119I TTCGAA 2 cut(s) 17, 261
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 289, 320
BspACI CCGC 7 cut(s) 242, 307, 328, 456, 552, 555, 749
BspANI GGCC 1 cut(s) 275
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 2 cut(s) 516, 583
BspPI GGATC 1 cut(s) 328
BspT104I TTCGAA 2 cut(s) 17, 261
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 52, 303
BsrI ACTGG 1 cut(s) 441
BssAI RCCGGY 2 cut(s) 52, 303
BssECI CCNNGG 5 cut(s) 120, 237, 252, 532, 695
BssMI GATC 2 cut(s) 289, 320
BssNI GRCGYC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 2 cut(s) 91, 121
Bst4CI ACNGT 4 cut(s) 44, 112, 590, 637
BstACI GRCGYC 1 cut(s) 353
BstBI TTCGAA 2 cut(s) 17, 261
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 2 cut(s) 252, 695
BstF5I GGATG 2 cut(s) 452, 807
BstFNI CGCG 1 cut(s) 557
BstKTI GATC 2 cut(s) 292, 323
BstMAI GTCTC 4 cut(s) 71, 91, 165, 673
BstMBI GATC 2 cut(s) 289, 320
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 248, 281
BstNI CCWGG 2 cut(s) 91, 121
BstSCI CCNGG 2 cut(s) 89, 119
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 275
BtgI CCRYGG 2 cut(s) 252, 695
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 2 cut(s) 452, 807
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 40, 636
Cac8I GCNNGC 1 cut(s) 305
CaiI CAGNNNCTG 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 52, 303
Cfr13I GGNCC 3 cut(s) 103, 514, 582
CseI GACGC 1 cut(s) 342
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 1 cut(s) 67
CviJI RGCY 9 cut(s) 86, 140, 251, 275, 284, 406, 531, 624, 682
CviKI_1 RGCY 9 cut(s) 86, 140, 251, 275, 284, 406, 531, 624, 682
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 291, 322
DpnII GATC 2 cut(s) 289, 320
EaeI YGGCCR 1 cut(s) 273
EciI GGCGGA 1 cut(s) 764
Eco130I CCWWGG 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 3 cut(s) 103, 514, 582
Eco88I CYCGRG 2 cut(s) 74, 533
EcoO109I RGGNCCY 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 89, 119
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 70
FaiI YATR 5 cut(s) 68, 209, 607, 729, 782
FaqI GGGAC 2 cut(s) 323, 340
FatI CATG 1 cut(s) 66
FauI CCCGC 2 cut(s) 300, 559
Fnu4HI GCNGC 2 cut(s) 138, 555
FokI GGATG 2 cut(s) 439, 814
Fsp4HI GCNGC 2 cut(s) 138, 555
GluI GCNGC 2 cut(s) 138, 555
GsuI CTGGAG 1 cut(s) 112
HaeIII GGCC 1 cut(s) 275
HapII CCGG 4 cut(s) 53, 185, 304, 722
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 6 cut(s) 116, 191, 311, 377, 485, 538
HpaII CCGG 4 cut(s) 53, 185, 304, 722
HphI GGTGA 2 cut(s) 256, 394
Hpy166II GTNNAC 3 cut(s) 58, 64, 199
Hpy188I TCNGA 9 cut(s) 107, 222, 294, 320, 344, 415, 484, 490, 745
Hpy188III TCNNGA 5 cut(s) 76, 164, 287, 535, 600
Hpy8I GTNNAC 3 cut(s) 58, 64, 199
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 127, 779
HpyCH4III ACNGT 4 cut(s) 44, 112, 590, 637
HpyCH4IV ACGT 2 cut(s) 12, 60
HpyCH4V TGCA 3 cut(s) 40, 629, 659
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 281
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 2 cut(s) 12, 60
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 70
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 289, 320
Lsp1109I GCAGC 1 cut(s) 149
MaeII ACGT 2 cut(s) 12, 60
MaeIII GTNAC 2 cut(s) 423, 631
MalI GATC 2 cut(s) 291, 322
MboI GATC 2 cut(s) 289, 320
MboII GAAGA 8 cut(s) 16, 171, 407, 429, 456, 459, 577, 605
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 6 cut(s) 32, 361, 390, 409, 675, 777
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 305, 386
MmeI TCCRAC 1 cut(s) 723
Mox20I TGGCCA 1 cut(s) 275
MroNI GCCGGC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 275
MseI TTAA 1 cut(s) 838
MslI CAYNNNNRTG 1 cut(s) 575
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 4 cut(s) 53, 185, 304, 722
MspR9I CCNGG 2 cut(s) 91, 121
MvaI CCWGG 2 cut(s) 91, 121
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 248, 281
NaeI GCCGGC 1 cut(s) 305
NdeII GATC 2 cut(s) 289, 320
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 516, 583
NmuCI GTSAC 1 cut(s) 631
NspV TTCGAA 2 cut(s) 17, 261
OliI CACNNNNGTG 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 305
PfeI GAWTC 4 cut(s) 116, 191, 485, 538
PfoI TCCNGGA 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 2 cut(s) 139, 556
PleI GAGTC 2 cut(s) 305, 385
PpsI GAGTC 2 cut(s) 305, 385
PpuMI RGGWCCY 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 89, 119
PspGI CCWGG 2 cut(s) 89, 119
PspN4I GGNNCC 2 cut(s) 516, 583
PspPI GGNCC 3 cut(s) 103, 514, 582
PspPPI RGGWCCY 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 1 cut(s) 838
SatI GCNGC 2 cut(s) 138, 555
Sau3AI GATC 2 cut(s) 289, 320
Sau96I GGNCC 3 cut(s) 103, 514, 582
SchI GAGTC 2 cut(s) 305, 386
ScrFI CCNGG 2 cut(s) 91, 121
SduI GDGCHC 1 cut(s) 75
SetI ASST 8 cut(s) 15, 63, 88, 105, 142, 286, 497, 740
Sfr274I CTCGAG 1 cut(s) 74
SfuI TTCGAA 2 cut(s) 17, 261
SinI GGWCC 3 cut(s) 103, 514, 582
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 575
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 6 cut(s) 32, 361, 390, 409, 675, 777
SsiI CCGC 7 cut(s) 242, 307, 328, 456, 552, 555, 749
StyD4I CCNGG 2 cut(s) 89, 119
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 4 cut(s) 44, 112, 590, 637
TaiI ACGT 2 cut(s) 15, 63
TaqI TCGA 7 cut(s) 17, 49, 75, 203, 261, 470, 707
TasI AATT 6 cut(s) 32, 361, 390, 409, 675, 777
TauI GCSGC 1 cut(s) 557
TfiI GAWTC 4 cut(s) 116, 191, 485, 538
Tru1I TTAA 1 cut(s) 838
Tru9I TTAA 1 cut(s) 838
TscAI CASTG 2 cut(s) 47, 636
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 3 cut(s) 17, 435, 818
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 2 cut(s) 47, 636
VpaK11BI GGWCC 3 cut(s) 103, 514, 582
XapI RAATTY 3 cut(s) 32, 361, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XhoI CTCGAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.