Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009775

Physical Location & Seq

Genomic Coordinates Forward (+)

7072391 .. 7074108

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCCAAAAACGCGTTCAAGATGGAGCACCCTCTCGAAAAGAGACAAGCCGAAGCTGCTCGCATAAGAGAGAAGTATCCTGACAGAATACCAGTGGTTGTGGAAAGGGCTGAGAAGAGTGATGTGCCTGAAATTGACAAGAAAAAATACCTGGTGCCTGCGGATCTGACTATTGGCCAGTTCGTGTACGTTGTCCGGAAGAGGATCAAGCTCAGTGCTGAGAAGGCTATTTTCATCTTTGTTAAGAATATTTTGCCACCCACAGCCGCTACGATGTCTGCTATTTATGAGGAAAATAAGGATGAAGATGGCTTTCTTTACATGACGTACAGCGGCGAGAACACATTCGGGACATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

8.75

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	14 - 117	4.4e-51	Autophagy protein Atg8 ubiquitin like
APG12	PF04110	39 - 117	4.1e-06	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009775)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05630
fragaria_vesca	FvH4_6g43130
prunus_persica	Prupe.3G216800_v2.0.a1 Prupe.3G216800_v2.0.a1
pyrus_communis	pycom17g09310
rosa_chinensis	RchiOBHm_Chr2g0159191 RchiOBHm_Chr5g0040231
rosa_laevigata	RLG00000021142
rosa_multiflora	Rmu_sc0002908.1_g000011 Rmu_sc0004528.1_g000006 Rmu_sc0010162.1_g000005 Rmu_sc0015963.1_g000001
rosa_roxburghii	Rroxscaffold_1G00041060 Rroxscaffold_2G00090710
rosa_rugosa	Rorug02G0474600 Rorug05G0184300
rosa_samantha	Rh5AG271200 Rh5BG274500 Rh5CG307400
rosa_wichuraiana	Rw2G044790 Rw5G025360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	3 cut(s)	161, 267, 333
AclWI	GGATC	2 cut(s)	171, 212
AcoI	YGGCCR	2 cut(s)	3, 175
AfaI	GTAC	2 cut(s)	188, 329
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	56, 211
AluI	AGCT	2 cut(s)	56, 211
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	171, 212
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	2 cut(s)	3, 175
ApeKI	GCWGC	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	344
BalI	TGGCCA	2 cut(s)	5, 177
BanI	GGYRCC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	16, 302
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	57, 267, 334
BlsI	GCNGC	3 cut(s)	58, 268, 335
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	92, 178
BseAI	TCCGGA	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	102, 210, 226
BseNI	ACTGG	2 cut(s)	92, 178
BseXI	GCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	5, 177
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	196
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	2 cut(s)	5, 177
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	163, 204
BspACI	CCGC	3 cut(s)	161, 267, 333
BspANI	GGCC	2 cut(s)	5, 177
BspCNI	CTCAG	3 cut(s)	103, 211, 225
BspEI	TCCGGA	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	171, 212
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	92, 178
BssMI	GATC	2 cut(s)	163, 204
Bst2UI	CCWGG	1 cut(s)	152
Bst6I	CTCTTC	2 cut(s)	110, 194
BstC8I	GCNNGC	2 cut(s)	61, 159
BstDEI	CTNAG	3 cut(s)	111, 212, 219
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	166, 207
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	163, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 56, 224
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	5, 177
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	99, 220
Cac8I	GCNNGC	2 cut(s)	61, 159
CsiI	ACCWGGT	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	187, 328
CviAII	CATG	1 cut(s)	322
CviJI	RGCY	9 cut(s)	5, 50, 56, 110, 177, 211, 227, 266, 312
CviKI_1	RGCY	9 cut(s)	5, 50, 56, 110, 177, 211, 227, 266, 312
CviQI	GTAC	2 cut(s)	187, 328
DdeI	CTNAG	3 cut(s)	111, 212, 219
DpnI	GATC	2 cut(s)	165, 206
DpnII	GATC	2 cut(s)	163, 204
EaeI	YGGCCR	2 cut(s)	3, 175
Eam1104I	CTCTTC	2 cut(s)	110, 194
EarI	CTCTTC	2 cut(s)	110, 194
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	325
FaiI	YATR	3 cut(s)	65, 288, 323
FatI	CATG	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	57, 267, 334
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	57, 267, 334
GluI	GCNGC	3 cut(s)	57, 267, 334
HaeIII	GGCC	2 cut(s)	5, 177
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	1 cut(s)	325
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	168, 359
Hpy188III	TCNNGA	5 cut(s)	19, 35, 80, 196, 349
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	189, 326
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 56, 224
HpyF3I	CTNAG	3 cut(s)	111, 212, 219
HpySE526I	ACGT	2 cut(s)	189, 326
Hsp92II	CATG	1 cut(s)	325
Kpn2I	TCCGGA	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	163, 204
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	8 cut(s)	93, 105, 137, 141, 164, 171, 191, 209
Lsp1109I	GCAGC	1 cut(s)	43
MabI	ACCWGGT	1 cut(s)	150
MaeII	ACGT	2 cut(s)	189, 326
MalI	GATC	2 cut(s)	165, 206
MboI	GATC	2 cut(s)	163, 204
MboII	GAAGA	3 cut(s)	127, 211, 317
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	2 cut(s)	5, 177
MluCI	AATT	1 cut(s)	132
MluI	ACGCGT	1 cut(s)	12
MluNI	TGGCCA	2 cut(s)	5, 177
MnlI	CCTC	3 cut(s)	42, 195, 283
Mox20I	TGGCCA	2 cut(s)	5, 177
MroI	TCCGGA	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	344
MscI	TGGCCA	2 cut(s)	5, 177
MseI	TTAA	1 cut(s)	243
Msp20I	TGGCCA	2 cut(s)	5, 177
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	11, 56, 224
NdeII	GATC	2 cut(s)	163, 204
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	156
PdmI	GAANNNNTTC	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	58, 268, 335
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	163
RsaI	GTAC	2 cut(s)	188, 329
RsaNI	GTAC	2 cut(s)	187, 328
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	57, 267, 334
Sau3AI	GATC	2 cut(s)	163, 204
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	58, 153, 192, 213, 329
SexAI	ACCWGGT	1 cut(s)	150
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	3 cut(s)	161, 267, 333
SspI	AATATT	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	150
TaiI	ACGT	2 cut(s)	192, 329
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	132
TauI	GCSGC	2 cut(s)	269, 336
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	99, 220
TseI	GCWGC	1 cut(s)	56
TspDTI	ATGAA	2 cut(s)	223, 318
TspRI	CASTG	2 cut(s)	99, 220
XmnI	GAANNNNTTC	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.