pycom17g09350

Peptidase family M50

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
7110993 .. 7112360
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1368 bp
ATGATCATTAATCTCTCAGCTTCTCCACCCTCCTCTTCTTTCTCTCTCATCAAGTTATCCAATTCCAAATTACCCATATCTGATTTTCCATCAAAACCCAAAACCCACCACCCAAAACCTCCATCTTCTTCCATTTGCTGCTCATTTTCTTCACCAGACCTTGGTTTTCACTGCAAGGATCGATTTTTCTCTGAAAATGGCAGGTGCCCACATGGGAAAAGGTTCAAGTTTAGGACTTGTGCGATTCCTGGGTTCGACTATGGCAACTTTGAAAGTGCTCAGTCTGTTTTGGAGGCGGCTGCTGTGTTAACGGCCATAATTGTTGTCCATGAGAGCGGTCACTTCCTGGCTGCTTATCTCCAAGGCATCCATGTAAGTAAGTTTGCAGTTGGTTTTGGTCCAATTTTAGCTAAATTCAATGCAAACAATGTGGAGTATTCTATTAGAGCTTTTCCTCTAGGTGGGTTTGTGGGGTTTCCAGATAATGATCCAGATAGTGATATTCCAGTTGACGATAAGAATCTGCTTAAGAACAGGCCAATATTGGATAGAATAATTGTGGTTTCAGCTGGTGTGGTTGCCAATATTATTTTTGCCTATCTTATAATATTTACTCAAGTGTTGTCTGTTGGTTTGCCTGTACAAGAGGCCTATCCTGGGGTGCTAGTGCCCGAGGTTCGCCCTTTCTCCGCTGCTTCCCGAGATGGGTTGCTTGCCGGCGATGTGATCCTTACGGTTAACGGAAATGAATTGCCAAGAGGAGGTCCTAATGGTGTTTCAGAGATTGTTGATGTGATTAAGCAGAATCCCAAAAGAAATGTGGTTCTTAAGGTCGCGAGGGGACAGCAGGATTTTGAAATTGGGATCACACCGGATGAGAATTATGATGGAACAGGCAAAATCGGAGTGCAATTATCGCCAAATGTTAAGTTTACGAAAGTTAAACCTAAAAGTGTTTCTGAAGCTTTTAATTATACTGGGAGAGAATTTTGGGGCTTGTCATCTAATGTTTTAGATAGTTTAAAGCAGACTGTTCTAAACTTCTCACAGACAGCTAGTAAGGTTTCAGGTCCAGTTGCAATCATAGCTGTAGGGGCAGAAGTTGCAAGGTCGAATATTGATGGACTCTATCAGTTTGCAGCCTTGCTTAATCTCAACCTTGCAGTAATCAACCTTCTTCCGCTACCTGCTTTAGACGGTGGTACCTTGGCTTTCATCTTCATAGAGGCTGCTAGGGGTGGGAGAAAGCTCCCTCTAGAAGTAGAGCAGGGGATTATGTCATCAGGGATAACCCTTGTTCTTTTCCTAGGATTGTTCCTTATCGTTAAGGACACGCTTAATCTTGATTTTATCAAGGACATGTTGTAA

Protein Analysis

456

Amino Acids

48.94

Weight (kDa)

7.64

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M50 PF02163 99 - 436 1.7e-57 Peptidase family M50
PDZ_2 PF13180 211 - 287 9.7e-07 PDZ domain
PDZ_6 PF17820 223 - 280 7.9e-09 PDZ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
AarI CACCTGC 1 cut(s) 192
Acc36I ACCTGC 2 cut(s) 192, 1195
Acc65I GGTACC 1 cut(s) 1202
AccB1I GGYRCC 2 cut(s) 204, 1202
AccB7I CCANNNNNTGG 1 cut(s) 161
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 836
AciI CCGC 4 cut(s) 296, 336, 690, 1181
AclWI GGATC 4 cut(s) 186, 482, 721, 872
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 2 cut(s) 413, 986
AcuI CTGAAG 1 cut(s) 981
AfaI GTAC 2 cut(s) 642, 1204
AfiI CCNNNNNNNGG 5 cut(s) 161, 461, 657, 705, 761
AflII CTTAAG 2 cut(s) 527, 827
AflIII ACRYGT 1 cut(s) 1359
AgsI TTSAA 4 cut(s) 226, 272, 418, 857
AjnI CCWGG 3 cut(s) 247, 345, 655
AluBI AGCT 8 cut(s) 20, 410, 449, 569, 965, 1055, 1088, 1249
AluI AGCT 8 cut(s) 20, 410, 449, 569, 965, 1055, 1088, 1249
Alw21I GWGCWC 1 cut(s) 280
AlwI GGATC 4 cut(s) 186, 482, 721, 872
Ama87I CYCGRG 2 cut(s) 671, 699
AoxI GGCC 3 cut(s) 312, 536, 648
ApeKI GCWGC 6 cut(s) 138, 299, 350, 692, 1139, 1229
ApoI RAATTY 2 cut(s) 413, 986
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 221
Asp718I GGTACC 1 cut(s) 1202
AspA2I CCTAGG 1 cut(s) 1306
AspS9I GGNCC 3 cut(s) 398, 764, 1070
AsuHPI GGTGA 1 cut(s) 144
AvaI CYCGRG 2 cut(s) 671, 699
AvaII GGWCC 3 cut(s) 398, 764, 1070
AvrII CCTAGG 1 cut(s) 1306
BaeGI GKGCMC 2 cut(s) 209, 672
BaeI ACNNNNGTAYC 2 cut(s) 1186, 1219
BanI GGYRCC 2 cut(s) 204, 1202
BarI GAAGNNNNNNTAC 2 cut(s) 1158, 1190
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 6 cut(s) 125, 286, 337, 679, 1151, 1216
BccI CCATC 5 cut(s) 97, 130, 698, 881, 1115
BceAI ACGGC 1 cut(s) 327
BciT130I CCWGG 3 cut(s) 249, 347, 657
BclI TGATCA 1 cut(s) 3
BfaI CTAG 6 cut(s) 458, 665, 1056, 1233, 1256, 1307
BfmI CTRYAG 1 cut(s) 1089
BfrI CTTAAG 2 cut(s) 527, 827
BfuAI ACCTGC 2 cut(s) 192, 1195
BisI GCNGC 7 cut(s) 139, 297, 300, 351, 693, 1140, 1230
BlnI CCTAGG 1 cut(s) 1306
BlsI GCNGC 7 cut(s) 140, 298, 301, 352, 694, 1141, 1231
Bme1390I CCNGG 3 cut(s) 249, 347, 657
Bme18I GGWCC 3 cut(s) 398, 764, 1070
BmeT110I CYCGRG 2 cut(s) 671, 699
BmgT120I GGNCC 3 cut(s) 398, 764, 1070
BmiI GGNNCC 2 cut(s) 206, 1204
BmrFI CCNGG 3 cut(s) 249, 347, 657
BmrI ACTGGG 1 cut(s) 987
BmsI GCATC 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 600
Bsa29I ATCGAT 1 cut(s) 181
BsaBI GATNNNNATC 2 cut(s) 486, 519
BsaJI CCNNGG 7 cut(s) 160, 248, 361, 656, 672, 1206, 1306
BsaWI WCCGGW 1 cut(s) 871
Bsc4I CCNNNNNNNGG 5 cut(s) 161, 461, 657, 705, 761
Bse118I RCCGGY 1 cut(s) 716
Bse1I ACTGG 3 cut(s) 506, 982, 1073
Bse8I GATNNNNATC 2 cut(s) 486, 519
BseBI CCWGG 3 cut(s) 249, 347, 657
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 7 cut(s) 160, 248, 361, 656, 672, 1206, 1306
BseGI GGATG 2 cut(s) 366, 880
BseJI GATNNNNATC 2 cut(s) 486, 519
BseLI CCNNNNNNNGG 5 cut(s) 161, 461, 657, 705, 761
BseMII CTCAG 2 cut(s) 30, 293
BseNI ACTGG 3 cut(s) 506, 982, 1073
BseRI GAGGAG 2 cut(s) 22, 774
BseSI GKGCMC 2 cut(s) 209, 672
BseXI GCAGC 6 cut(s) 125, 286, 337, 679, 1151, 1216
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 3 cut(s) 314, 538, 650
BshNI GGYRCC 2 cut(s) 204, 1202
BshVI ATCGAT 1 cut(s) 181
BsiHKAI GWGCWC 1 cut(s) 280
BsiHKCI CYCGRG 2 cut(s) 671, 699
BsiSI CCGG 2 cut(s) 717, 872
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 5 cut(s) 161, 461, 657, 705, 761
BsmFI GGGAC 1 cut(s) 855
BsnI GGCC 3 cut(s) 314, 538, 650
BsoBI CYCGRG 2 cut(s) 671, 699
Bsp1286I GDGCHC 3 cut(s) 209, 280, 672
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 5 cut(s) 3, 178, 487, 726, 864
Bsp68I TCGCGA 1 cut(s) 836
BspACI CCGC 4 cut(s) 296, 336, 690, 1181
BspANI GGCC 3 cut(s) 314, 538, 650
BspCNI CTCAG 2 cut(s) 29, 292
BspDI ATCGAT 1 cut(s) 181
BspFNI CGCG 1 cut(s) 836
BspLI GGNNCC 2 cut(s) 206, 1204
BspMI ACCTGC 2 cut(s) 192, 1195
BspPI GGATC 4 cut(s) 186, 482, 721, 872
BspT107I GGYRCC 2 cut(s) 204, 1202
BspTI CTTAAG 2 cut(s) 527, 827
BsrBI CCGCTC 1 cut(s) 336
BsrFI RCCGGY 1 cut(s) 716
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 3 cut(s) 506, 982, 1073
BssAI RCCGGY 1 cut(s) 716
BssECI CCNNGG 7 cut(s) 160, 248, 361, 656, 672, 1206, 1306
BssMI GATC 5 cut(s) 3, 178, 487, 726, 864
BssT1I CCWWGG 4 cut(s) 160, 361, 1206, 1306
Bst2UI CCWGG 3 cut(s) 249, 347, 657
Bst4CI ACNGT 3 cut(s) 736, 1033, 1199
Bst6I CTCTTC 1 cut(s) 40
BstAFI CTTAAG 2 cut(s) 527, 827
BstAPI GCANNNNNTGC 1 cut(s) 1103
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 714, 718
BstDEI CTNAG 2 cut(s) 16, 279
BstF5I GGATG 2 cut(s) 366, 880
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 5 cut(s) 6, 181, 490, 729, 867
BstMBI GATC 5 cut(s) 3, 178, 487, 726, 864
BstMWI GCNNNNNNNGC 4 cut(s) 916, 1085, 1094, 1103
BstNI CCWGG 3 cut(s) 249, 347, 657
BstNSI RCATGY 1 cut(s) 1363
BstSCI CCNGG 3 cut(s) 247, 345, 655
BstSFI CTRYAG 1 cut(s) 1089
BstSLI GKGCMC 2 cut(s) 209, 672
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 6 cut(s) 125, 286, 337, 679, 1151, 1216
Bsu15I ATCGAT 1 cut(s) 181
BsuRI GGCC 3 cut(s) 314, 538, 650
BsuTUI ATCGAT 1 cut(s) 181
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 2 cut(s) 366, 880
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
BtuMI TCGCGA 1 cut(s) 836
BveI ACCTGC 2 cut(s) 192, 1195
Cac8I GCNNGC 2 cut(s) 714, 718
Cfr10I RCCGGY 1 cut(s) 716
Cfr13I GGNCC 3 cut(s) 398, 764, 1070
ClaI ATCGAT 1 cut(s) 181
Csp6I GTAC 2 cut(s) 641, 1203
CspCI CAANNNNNGTGG 2 cut(s) 411, 446
CviAII CATG 4 cut(s) 212, 329, 371, 1360
CviQI GTAC 2 cut(s) 641, 1203
DdeI CTNAG 2 cut(s) 16, 279
DpnI GATC 5 cut(s) 5, 180, 489, 728, 866
DpnII GATC 5 cut(s) 3, 178, 487, 726, 864
DraI TTTAAA 1 cut(s) 1023
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 4 cut(s) 160, 361, 1206, 1306
Eco147I AGGCCT 1 cut(s) 650
Eco47I GGWCC 3 cut(s) 398, 764, 1070
Eco57I CTGAAG 1 cut(s) 981
Eco88I CYCGRG 2 cut(s) 671, 699
EcoO109I RGGNCCY 1 cut(s) 764
EcoRII CCWGG 3 cut(s) 247, 345, 655
EcoT14I CCWWGG 4 cut(s) 160, 361, 1206, 1306
ErhI CCWWGG 4 cut(s) 160, 361, 1206, 1306
FaeI CATG 4 cut(s) 215, 332, 374, 1363
FaqI GGGAC 1 cut(s) 855
FatI CATG 4 cut(s) 211, 328, 370, 1359
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 7 cut(s) 139, 297, 300, 351, 693, 1140, 1230
FokI GGATG 2 cut(s) 353, 887
Fsp4HI GCNGC 7 cut(s) 139, 297, 300, 351, 693, 1140, 1230
FspBI CTAG 6 cut(s) 458, 665, 1056, 1233, 1256, 1307
GluI GCNGC 7 cut(s) 139, 297, 300, 351, 693, 1140, 1230
HaeIII GGCC 3 cut(s) 314, 538, 650
HapII CCGG 2 cut(s) 717, 872
Hin1II CATG 4 cut(s) 215, 332, 374, 1363
HincII GTYRAC 3 cut(s) 309, 511, 739
HindII GTYRAC 3 cut(s) 309, 511, 739
HindIII AAGCTT 1 cut(s) 963
HinfI GANTC 4 cut(s) 244, 520, 805, 1125
HpaI GTTAAC 2 cut(s) 309, 739
HpaII CCGG 2 cut(s) 717, 872
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 4 cut(s) 309, 511, 739, 933
Hpy188I TCNGA 5 cut(s) 82, 193, 781, 905, 961
Hpy188III TCNNGA 6 cut(s) 479, 491, 699, 835, 1256, 1343
Hpy8I GTNNAC 4 cut(s) 309, 511, 739, 933
HpyAV CCTTC 1 cut(s) 1184
HpyCH4III ACNGT 3 cut(s) 736, 1033, 1199
HpyCH4V TGCA 8 cut(s) 174, 386, 422, 910, 1079, 1106, 1139, 1163
HpyF10VI GCNNNNNNNGC 4 cut(s) 916, 1085, 1094, 1103
HpyF3I CTNAG 2 cut(s) 16, 279
Hsp92II CATG 4 cut(s) 215, 332, 374, 1363
KpnI GGTACC 1 cut(s) 1206
KroI GCCGGC 1 cut(s) 716
KroNI GCCGGC 1 cut(s) 718
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 2 cut(s) 309, 739
Kzo9I GATC 5 cut(s) 3, 178, 487, 726, 864
LmnI GCTCC 1 cut(s) 1254
Lsp1109I GCAGC 6 cut(s) 125, 286, 337, 679, 1151, 1216
LweI GCATC 1 cut(s) 375
MaeI CTAG 6 cut(s) 458, 665, 1056, 1233, 1256, 1307
MaeIII GTNAC 1 cut(s) 338
MalI GATC 5 cut(s) 5, 180, 489, 728, 866
MbiI CCGCTC 1 cut(s) 336
MboI GATC 5 cut(s) 3, 178, 487, 726, 864
MboII GAAGA 6 cut(s) 27, 117, 120, 141, 1169, 1210
MhlI GDGCHC 3 cut(s) 209, 280, 672
MlyI GAGTC 1 cut(s) 1119
MroNI GCCGGC 1 cut(s) 716
MroXI GAANNNNTTC 1 cut(s) 221
MspA1I CMGCKG 2 cut(s) 569, 692
MspCI CTTAAG 2 cut(s) 527, 827
MspI CCGG 2 cut(s) 717, 872
MspR9I CCNGG 3 cut(s) 249, 347, 657
MvaI CCWGG 3 cut(s) 249, 347, 657
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 4 cut(s) 916, 1085, 1094, 1103
NaeI GCCGGC 1 cut(s) 718
NdeII GATC 5 cut(s) 3, 178, 487, 726, 864
NgoMIV GCCGGC 1 cut(s) 716
NlaIII CATG 4 cut(s) 215, 332, 374, 1363
NlaIV GGNNCC 2 cut(s) 206, 1204
NmuCI GTSAC 1 cut(s) 338
NruI TCGCGA 1 cut(s) 836
NspI RCATGY 1 cut(s) 1363
PaqCI CACCTGC 1 cut(s) 192
PceI AGGCCT 1 cut(s) 650
PciI ACATGT 1 cut(s) 1359
PdiI GCCGGC 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 3 cut(s) 244, 520, 805
PflMI CCANNNNNTGG 1 cut(s) 161
PkrI GCNGC 7 cut(s) 140, 298, 301, 352, 694, 1141, 1231
PleI GAGTC 1 cut(s) 1119
PpsI GAGTC 1 cut(s) 1119
PpuMI RGGWCCY 1 cut(s) 764
PscI ACATGT 1 cut(s) 1359
PshBI ATTAAT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 764
Psp6I CCWGG 3 cut(s) 247, 345, 655
PspGI CCWGG 3 cut(s) 247, 345, 655
PspN4I GGNNCC 2 cut(s) 206, 1204
PspPI GGNCC 3 cut(s) 398, 764, 1070
PspPPI RGGWCCY 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 569
RruI TCGCGA 1 cut(s) 836
RsaI GTAC 2 cut(s) 642, 1204
RsaNI GTAC 2 cut(s) 641, 1203
SatI GCNGC 7 cut(s) 139, 297, 300, 351, 693, 1140, 1230
Sau3AI GATC 5 cut(s) 3, 178, 487, 726, 864
Sau96I GGNCC 3 cut(s) 398, 764, 1070
SchI GAGTC 1 cut(s) 1119
ScrFI CCNGG 3 cut(s) 249, 347, 657
SduI GDGCHC 3 cut(s) 209, 280, 672
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 1 cut(s) 1089
SinI GGWCC 3 cut(s) 398, 764, 1070
SmlI CTYRAG 3 cut(s) 527, 615, 827
SmoI CTYRAG 3 cut(s) 527, 615, 827
SseBI AGGCCT 1 cut(s) 650
SsiI CCGC 4 cut(s) 296, 336, 690, 1181
SspI AATATT 4 cut(s) 543, 586, 609, 1117
SspMI CTAG 6 cut(s) 458, 665, 1056, 1233, 1256, 1307
StuI AGGCCT 1 cut(s) 650
StyD4I CCNGG 3 cut(s) 247, 345, 655
StyI CCWWGG 4 cut(s) 160, 361, 1206, 1306
TaaI ACNGT 3 cut(s) 736, 1033, 1199
TaqI TCGA 3 cut(s) 181, 255, 1112
TatI WGTACW 1 cut(s) 640
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 244, 520, 805
TscAI CASTG 1 cut(s) 176
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 6 cut(s) 138, 299, 350, 692, 1139, 1229
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 762, 1204, 1210
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 161
Vha464I CTTAAG 2 cut(s) 527, 827
VpaK11BI GGWCC 3 cut(s) 398, 764, 1070
VspI ATTAAT 1 cut(s) 9
XapI RAATTY 2 cut(s) 413, 986
XbaI TCTAGA 1 cut(s) 1255
XceI RCATGY 1 cut(s) 1363
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmaJI CCTAGG 1 cut(s) 1306
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 6 cut(s) 458, 665, 1056, 1233, 1256, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.