pycom17g10000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012978
Physical Location & Seq
Forward (+)
7729896 .. 7732129
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGAATTGGATACAAGTTGCCCTTAGTTTGTTTGAACAAGCAAAGTATGGACTCTACGGAATCCCATCTGATCTGACCAATAAAAAGCCGCAAAAAATACAACAAAAGAAGAAGAAGAAGCTTTTCAAGCTTTTGCCTCCATTTTCCCCAGAAACTTCGCGGTGCGCATCCCTAGCATGCGCCATGCAGCGCCTTAGAAGCTCAGGGACCGTACTTTCGTGGTCGCAAGCCATAACCCAGTTGAGGAAGAAAGCTTTCAGATCATGGGCTGCCGTTCAGGACACTTATTTTTCCACAAAGGATATATTTGAAAGCCATAAGGTTGTATTTACAGTTGGAACTTCTATTGCATCAGTCGCCACAGCATGGTTTGGATATACTTTACGCCATGTACATGAATCAAGAGTTGATCAAAGGCTCGAATCAATTGAAAAAGCTATGAAAAACAATCATAATCTAGAGCAATCGGAAATTAGAAACATCATGGATTCTGGAACTATAGGTCTTCCTTCATGCATAGCCACTGCGGGAACCACTTTAGTTATCGGCTACGCTTTGGGTTGGCGAGGTGGAAGGTGGTATGCAAATAGGAAGTTCAGAAGGGAGCAGATGAAATTGCTAGGTCAAATTAAACCGAAAAGGTGGCCACTGCTTAGGCGGATAGAACCTAAAGCGTGGCAATTCCAATTTCTCAGAAGACCGCTAACCAGACCGAGAACACAAGATAATCATGTCAAAACGTCGGAAAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

29.04

Weight (kDa)

10.6

Isoelectric Point (pI)

59.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G04985 AT1G04985
fragaria_vesca FvH4_6g41990
malus_domestica MD17G1107300.v1.1
prunus_persica Prupe.3G209000_v2.0.a1 Prupe.3G209000_v2.0.a1
pyrus_communis pycom09g03990 pycom17g10000
rosa_chinensis RchiOBHm_Chr2g0157891
rosa_laevigata RLG00000021034
rosa_multiflora Rmu_sc0002441.1_g000006
rosa_roxburghii Rroxscaffold_2G00091870
rosa_rugosa Rorug02G0464200
rosa_samantha Rh2AG529600 Rh2BG544200 Rh2CG513900 Rh2DG552500
rosa_wichuraiana Rw2G043820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 366
AccII CGCG 1 cut(s) 160
AciI CCGC 5 cut(s) 89, 160, 527, 658, 701
AcoI YGGCCR 1 cut(s) 644
AfaI GTAC 2 cut(s) 213, 393
AfiI CCNNNNNNNGG 2 cut(s) 243, 366
AgsI TTSAA 4 cut(s) 35, 127, 311, 431
AluBI AGCT 5 cut(s) 121, 130, 201, 254, 437
AluI AGCT 5 cut(s) 121, 130, 201, 254, 437
AoxI GGCC 1 cut(s) 644
ApeKI GCWGC 2 cut(s) 187, 269
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
Asp700I GAANNNNTTC 2 cut(s) 122, 254
AspLEI GCGC 3 cut(s) 167, 182, 192
AspS9I GGNCC 1 cut(s) 207
AvaII GGWCC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 497, 703
BbvI GCAGC 2 cut(s) 199, 256
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 257
BciVI GTATCC 1 cut(s) 3
BclI TGATCA 1 cut(s) 409
BfaI CTAG 3 cut(s) 173, 458, 620
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 193
BfuI GTATCC 1 cut(s) 3
BisI GCNGC 3 cut(s) 89, 188, 270
BlsI GCNGC 3 cut(s) 90, 189, 271
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 208, 532
BmrI ACTGGG 1 cut(s) 232
BmsI GCATC 2 cut(s) 176, 359
BmuI ACTGGG 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 497, 703
Bpu10I CCTNAGC 2 cut(s) 202, 653
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 366
Bse1I ACTGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 243, 366
BseMII CTCAG 2 cut(s) 216, 706
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 199, 256
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 646
BslFI GGGAC 1 cut(s) 220
BslI CCNNNNNNNGG 2 cut(s) 243, 366
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 1 cut(s) 646
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 3 cut(s) 70, 260, 409
BspACI CCGC 5 cut(s) 89, 160, 527, 658, 701
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 2 cut(s) 215, 705
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 208, 532
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 1 cut(s) 238
BssMI GATC 3 cut(s) 70, 260, 409
Bst4CI ACNGT 2 cut(s) 211, 334
BstAUI TGTACA 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 178, 228
BstDEI CTNAG 5 cut(s) 23, 194, 202, 653, 692
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 3 cut(s) 167, 182, 192
BstKTI GATC 3 cut(s) 73, 263, 412
BstMBI GATC 3 cut(s) 70, 260, 409
BstMWI GCNNNNNNNGC 4 cut(s) 127, 173, 198, 356
BstNSI RCATGY 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 199, 256
BstV2I GAAGAC 2 cut(s) 497, 703
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 646
BtsCI GGATG 1 cut(s) 167
BtsI GCAGTG 2 cut(s) 522, 647
BtsIMutI CAGTG 2 cut(s) 522, 647
Cac8I GCNNGC 2 cut(s) 178, 228
CfoI GCGC 3 cut(s) 167, 182, 192
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 2 cut(s) 212, 392
CviAII CATG 9 cut(s) 177, 184, 264, 366, 389, 395, 484, 513, 731
CviQI GTAC 2 cut(s) 212, 392
DdeI CTNAG 5 cut(s) 23, 194, 202, 653, 692
DpnI GATC 3 cut(s) 72, 262, 411
DpnII GATC 3 cut(s) 70, 260, 409
EaeI YGGCCR 1 cut(s) 644
EciI GGCGGA 1 cut(s) 673
Eco47I GGWCC 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 518
FaeI CATG 9 cut(s) 180, 187, 267, 369, 392, 398, 487, 516, 734
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 220
FatI CATG 9 cut(s) 176, 183, 263, 365, 388, 394, 483, 512, 730
FauI CCCGC 1 cut(s) 520
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 89, 188, 270
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 89, 188, 270
FspAI RTGCGCAY 1 cut(s) 166
FspBI CTAG 3 cut(s) 173, 458, 620
FspI TGCGCA 1 cut(s) 166
GlaI GCGC 3 cut(s) 166, 181, 191
GluI GCNGC 3 cut(s) 89, 188, 270
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 1 cut(s) 646
HhaI GCGC 3 cut(s) 167, 182, 192
Hin1II CATG 9 cut(s) 180, 187, 267, 369, 392, 398, 487, 516, 734
Hin6I GCGC 3 cut(s) 165, 180, 190
HinP1I GCGC 3 cut(s) 165, 180, 190
HindIII AAGCTT 3 cut(s) 119, 128, 252
HinfI GANTC 5 cut(s) 51, 60, 398, 422, 488
Hpy188I TCNGA 7 cut(s) 70, 75, 260, 469, 599, 695, 745
Hpy188III TCNNGA 4 cut(s) 278, 402, 458, 492
Hpy99I CGWCG 1 cut(s) 745
HpyAV CCTTC 3 cut(s) 519, 567, 594
HpyCH4III ACNGT 2 cut(s) 211, 334
HpyCH4IV ACGT 1 cut(s) 740
HpyCH4V TGCA 4 cut(s) 187, 350, 516, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 173, 198, 356
HpyF3I CTNAG 5 cut(s) 23, 194, 202, 653, 692
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 9 cut(s) 180, 187, 267, 369, 392, 398, 487, 516, 734
HspAI GCGC 3 cut(s) 165, 180, 190
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 70, 260, 409
LmnI GCTCC 1 cut(s) 604
LpnPI CCDG 6 cut(s) 162, 189, 251, 263, 477, 721
Lsp1109I GCAGC 2 cut(s) 199, 256
LweI GCATC 2 cut(s) 176, 359
MaeI CTAG 3 cut(s) 173, 458, 620
MaeII ACGT 1 cut(s) 740
MalI GATC 3 cut(s) 72, 262, 411
MboI GATC 3 cut(s) 70, 260, 409
MboII GAAGA 6 cut(s) 121, 124, 127, 259, 497, 708
MfeI CAATTG 1 cut(s) 426
MlsI TGGCCA 1 cut(s) 646
MluCI AATT 7 cut(s) 4, 426, 471, 614, 627, 680, 686
MluNI TGGCCA 1 cut(s) 646
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 2 cut(s) 316, 723
MnlI CCTC 3 cut(s) 147, 237, 560
Mox20I TGGCCA 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 518
MroXI GAANNNNTTC 2 cut(s) 122, 254
MscI TGGCCA 1 cut(s) 646
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 1 cut(s) 646
MunI CAATTG 1 cut(s) 426
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 4 cut(s) 127, 173, 198, 356
NdeII GATC 3 cut(s) 70, 260, 409
NlaIII CATG 9 cut(s) 180, 187, 267, 369, 392, 398, 487, 516, 734
NlaIV GGNNCC 2 cut(s) 208, 532
NsbI TGCGCA 1 cut(s) 166
NsiI ATGCAT 1 cut(s) 518
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PdmI GAANNNNTTC 2 cut(s) 122, 254
PfeI GAWTC 4 cut(s) 60, 398, 422, 488
PflMI CCANNNNNTGG 1 cut(s) 366
PkrI GCNGC 3 cut(s) 90, 189, 271
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspN4I GGNNCC 2 cut(s) 208, 532
PspPI GGNCC 1 cut(s) 207
RsaI GTAC 2 cut(s) 213, 393
RsaNI GTAC 2 cut(s) 212, 392
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 3 cut(s) 89, 188, 270
Sau3AI GATC 3 cut(s) 70, 260, 409
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 45
SfaNI GCATC 2 cut(s) 176, 359
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 393
SphI GCATGC 1 cut(s) 180
Sse9I AATT 7 cut(s) 4, 426, 471, 614, 627, 680, 686
SsiI CCGC 5 cut(s) 89, 160, 527, 658, 701
SspMI CTAG 3 cut(s) 173, 458, 620
TaaI ACNGT 2 cut(s) 211, 334
TaiI ACGT 1 cut(s) 743
TaqI TCGA 1 cut(s) 420
TaqII GACCGA 1 cut(s) 727
TasI AATT 7 cut(s) 4, 426, 471, 614, 627, 680, 686
TatI WGTACW 1 cut(s) 391
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 4 cut(s) 60, 398, 422, 488
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 2 cut(s) 529, 654
TseI GCWGC 2 cut(s) 187, 269
TspDTI ATGAA 5 cut(s) 17, 411, 455, 501, 626
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 529, 654
Van91I CCANNNNNTGG 1 cut(s) 366
VpaK11BI GGWCC 1 cut(s) 207
XbaI TCTAGA 1 cut(s) 457
XceI RCATGY 1 cut(s) 180
XmnI GAANNNNTTC 2 cut(s) 122, 254
XspI CTAG 3 cut(s) 173, 458, 620
Zsp2I ATGCAT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.