Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011143

Physical Location & Seq

Genomic Coordinates Reverse (-)

7798286 .. 7801184

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCCGGCGGTTTCTGAGAGAACTTCGATCGATGTTAGTGCTTTTCCGTCTGAAAGACCTGGATCGATCCTGCCGGAGTTCCTCTATTTGGGCAGCTACGATAACGCTTCTCGCTCTGAACTTCTCAAGACTCAGGGAATCTCTCGTGTCCTAAATACGGTTCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACTTATCACTACCTCCAAGATGACAAGATTTTGCAATTTGAGGATGCAAATCAATTTTTAGAGCAATGTGAAAGGGACAAGGCTCGCGTTTTAGTACACTGCATGTCAGGGCAAAAGAGGTCTCCGGCTATTGTAATTGCTTATTTGATGAAATCTAGAGGATGGAGACTAGCACTGAGTTACCAGTGGGTGAAAGAACGGAGACCAGCTGTTGAATTAACTGAAGCTTATTACCGGCAACTGCAGGAGTATGAGGAAAAGATTTTTGGATCAACTGATAAGAGCAACCCAACCCTGCCAGCCTTCCCACCGGCAGCTGCACCTTTGTTTAGCTTTGGCTTCCCAAGACCCAATAATCCAGTTCCCGTCCCTACATTTAACAATGTTGGTGCTACCTCTGTTTTCGCCCGGCCTCCCTTAGACATTCCTCCTCAAGACTTTACATTCGGAGCCAGCCAGCCTCAAAATAACATCTCAGCAAGCGCTTTCGGTGCAAACCCGCAGAATTCAAACCCCTGTGATATTCCAATGGATGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

DSPc

Protein Analysis

246

Amino Acids

27.36

Weight (kDa)

6.16

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DSPc	PF00782	28 - 151	8.3e-26	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04550 AT2G04550
fragaria_vesca	FvH4_6g41790
malus_domestica	MD09G1117100.v1.1 MD17G1108600.v1.1
prunus_persica	Prupe.3G206700_v2.0.a1 Prupe.3G206700_v2.0.a1
pyrus_communis	pycom09g04210 pycom17g10110
rosa_chinensis	RchiOBHm_Chr2g0157611
rosa_laevigata	RLG00000021000
rosa_multiflora	Rmu_sc0000195.1_g000049
rosa_roxburghii	Rroxscaffold_2G00092090
rosa_rugosa	Rorug02G0462300 Rorug02G0462300
rosa_samantha	Rh2AG526400 Rh2BG541300 Rh2CG511100 Rh2DG549800
rosa_wichuraiana	Rw2G043600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccII	CGCG	1 cut(s)	282
AciI	CCGC	2 cut(s)	8, 695
AclWI	GGATC	3 cut(s)	61, 70, 472
AcsI	RAATTY	1 cut(s)	700
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	1 cut(s)	291
AfeI	AGCGCT	1 cut(s)	679
AfiI	CCNNNNNNNGG	3 cut(s)	88, 157, 728
AgsI	TTSAA	2 cut(s)	410, 705
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	3 cut(s)	444, 476, 715
AluBI	AGCT	5 cut(s)	96, 404, 422, 512, 528
AluI	AGCT	5 cut(s)	96, 404, 422, 512, 528
Alw26I	GTCTC	3 cut(s)	321, 355, 391
AlwI	GGATC	3 cut(s)	61, 70, 472
Aor51HI	AGCGCT	1 cut(s)	679
AoxI	GGCC	1 cut(s)	605
ApeKI	GCWGC	3 cut(s)	93, 509, 512
ApoI	RAATTY	1 cut(s)	700
ArsI	GACNNNNNNTTYG	2 cut(s)	623, 655
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	680
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	397
BauI	CACGAG	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	105, 499, 521
BccI	CCATC	2 cut(s)	351, 722
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	3 cut(s)	321, 355, 391
BfaI	CTAG	2 cut(s)	351, 365
BfmI	CTRYAG	1 cut(s)	437
BfoI	RGCGCY	1 cut(s)	681
BisI	GCNGC	3 cut(s)	94, 510, 513
BlsI	GCNGC	3 cut(s)	95, 511, 514
Bme1390I	CCNGG	2 cut(s)	60, 604
BmiI	GGNNCC	2 cut(s)	162, 646
BmrFI	CCNGG	2 cut(s)	60, 604
BmsI	GCATC	1 cut(s)	229
BpuEI	CTTGAG	2 cut(s)	110, 612
BpuMI	CCSGG	1 cut(s)	604
Bsa29I	ATCGAT	2 cut(s)	30, 65
BsaBI	GATNNNNATC	1 cut(s)	243
BsaI	GGTCTC	2 cut(s)	321, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 157, 728
Bse118I	RCCGGY	3 cut(s)	4, 429, 505
Bse1I	ACTGG	2 cut(s)	379, 554
Bse3DI	GCAATG	1 cut(s)	266
Bse8I	GATNNNNATC	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	60
BseCI	ATCGAT	2 cut(s)	30, 65
BseGI	GGATG	3 cut(s)	244, 362, 733
BseJI	GATNNNNATC	1 cut(s)	243
BseLI	CCNNNNNNNGG	3 cut(s)	88, 157, 728
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	4 cut(s)	6, 146, 362, 684
BseNI	ACTGG	2 cut(s)	379, 554
BseRI	GAGGAG	1 cut(s)	615
BseXI	GCAGC	3 cut(s)	105, 499, 521
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	607
BshVI	ATCGAT	2 cut(s)	30, 65
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	6 cut(s)	5, 74, 320, 430, 506, 604
BslFI	GGGAC	2 cut(s)	284, 548
BslI	CCNNNNNNNGG	3 cut(s)	88, 157, 728
BsmAI	GTCTC	3 cut(s)	321, 355, 391
BsmFI	GGGAC	2 cut(s)	284, 548
BsnI	GGCC	1 cut(s)	607
Bso31I	GGTCTC	2 cut(s)	321, 391
Bsp143I	GATC	4 cut(s)	27, 62, 66, 464
BspACI	CCGC	2 cut(s)	8, 695
BspANI	GGCC	1 cut(s)	607
BspCNI	CTCAG	4 cut(s)	7, 145, 363, 683
BspDI	ATCGAT	2 cut(s)	30, 65
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	2 cut(s)	162, 646
BspMAI	CTGCAG	1 cut(s)	441
BspPI	GGATC	3 cut(s)	61, 70, 472
BspTNI	GGTCTC	2 cut(s)	321, 391
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	3 cut(s)	4, 429, 505
BsrI	ACTGG	2 cut(s)	379, 554
BssAI	RCCGGY	3 cut(s)	4, 429, 505
BssMI	GATC	4 cut(s)	27, 62, 66, 464
BssSI	CACGAG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	160
BstC8I	GCNNGC	6 cut(s)	6, 280, 495, 649, 653, 676
BstDEI	CTNAG	5 cut(s)	15, 132, 371, 613, 670
BstF5I	GGATG	3 cut(s)	244, 362, 733
BstFNI	CGCG	1 cut(s)	282
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	4 cut(s)	30, 65, 69, 467
BstMAI	GTCTC	3 cut(s)	321, 355, 391
BstMBI	GATC	4 cut(s)	27, 62, 66, 464
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	58, 602
BstSFI	CTRYAG	1 cut(s)	437
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	105, 499, 521
Bsu15I	ATCGAT	2 cut(s)	30, 65
BsuRI	GGCC	1 cut(s)	607
BsuTUI	ATCGAT	2 cut(s)	30, 65
BtsCI	GGATG	3 cut(s)	244, 362, 733
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	3 cut(s)	292, 368, 386
Cac8I	GCNNGC	6 cut(s)	6, 280, 495, 649, 653, 676
CfoI	GCGC	1 cut(s)	680
Cfr10I	RCCGGY	3 cut(s)	4, 429, 505
ClaI	ATCGAT	2 cut(s)	30, 65
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	5 cut(s)	15, 132, 371, 613, 670
DpnI	GATC	4 cut(s)	29, 64, 68, 466
DpnII	GATC	4 cut(s)	27, 62, 66, 464
Eco31I	GGTCTC	2 cut(s)	321, 391
Eco47III	AGCGCT	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	301
FaiI	YATR	2 cut(s)	299, 447
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	284, 548
FatI	CATG	1 cut(s)	297
FauI	CCCGC	1 cut(s)	702
Fnu4HI	GCNGC	3 cut(s)	94, 510, 513
FokI	GGATG	2 cut(s)	251, 369
Fsp4HI	GCNGC	3 cut(s)	94, 510, 513
FspBI	CTAG	2 cut(s)	351, 365
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	3 cut(s)	94, 510, 513
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	1 cut(s)	607
HapII	CCGG	6 cut(s)	5, 74, 320, 430, 506, 604
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	130, 138
HpaII	CCGG	6 cut(s)	5, 74, 320, 430, 506, 604
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	4 cut(s)	16, 52, 118, 644
Hpy188III	TCNNGA	4 cut(s)	127, 351, 629, 735
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	202, 508
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	6 cut(s)	229, 242, 297, 439, 515, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	5 cut(s)	15, 132, 371, 613, 670
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	678
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	27, 62, 66, 464
LmnI	GCTCC	1 cut(s)	644
Lsp1109I	GCAGC	3 cut(s)	105, 499, 521
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	351, 365
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	4 cut(s)	29, 64, 68, 466
MboI	GATC	4 cut(s)	27, 62, 66, 464
MluCI	AATT	5 cut(s)	230, 248, 330, 410, 700
MlyI	GAGTC	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	413, 573
MspA1I	CMGCKG	2 cut(s)	404, 512
MspI	CCGG	6 cut(s)	5, 74, 320, 430, 506, 604
MspR9I	CCNGG	2 cut(s)	60, 604
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	686
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	4 cut(s)	27, 62, 66, 464
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	2 cut(s)	162, 646
NspI	RCATGY	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	3 cut(s)	95, 511, 514
Ple19I	CGATCG	1 cut(s)	30
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	162, 646
PstI	CTGCAG	1 cut(s)	441
PvuI	CGATCG	1 cut(s)	30
PvuII	CAGCTG	2 cut(s)	404, 512
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	413, 573
SatI	GCNGC	3 cut(s)	94, 510, 513
Sau3AI	GATC	4 cut(s)	27, 62, 66, 464
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	60, 604
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	125, 627
SmoI	CTYRAG	2 cut(s)	125, 627
Sse9I	AATT	5 cut(s)	230, 248, 330, 410, 700
SsiI	CCGC	2 cut(s)	8, 695
SspMI	CTAG	2 cut(s)	351, 365
StyD4I	CCNGG	2 cut(s)	58, 602
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	26, 30, 65
TasI	AATT	5 cut(s)	230, 248, 330, 410, 700
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	2 cut(s)	413, 573
Tru9I	TTAA	2 cut(s)	413, 573
TscAI	CASTG	3 cut(s)	299, 375, 386
TseI	GCWGC	3 cut(s)	93, 509, 512
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	2 cut(s)	36, 409
TspRI	CASTG	3 cut(s)	299, 375, 386
Van91I	CCANNNNNTGG	1 cut(s)	728
XapI	RAATTY	1 cut(s)	700
XbaI	TCTAGA	1 cut(s)	350
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	2 cut(s)	351, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.