pycom17g13270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011583
Physical Location & Seq
Reverse (-)
10936894 .. 10938428
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 810 bp
ATGGCGGATTCTTCGAATGGGAAGTTGGATGGCGCCGAAAATGTTCAACCGGAGGATGTTGGCGACTCAAAACCTGTGGTTGAATCTGTGAGGGACGTAGCTGTCGATGACTGTTCCGAGCCTGCAAAGGAAACCCGCGATGATGCTGATGATTCGAGTTCGAGTTCAAGTAGTAGTTCGGATGAAGAGGCGGAAGGTGCTCGAGTGGCGAATGATTCTGGGGAAGTGGAGGAGACCGAAGAAGTTGTTGTCTCGGTTGTTGAGACGGTTGAATCTGTGTACAATCATTTGGATCAAGGTAGTGTTGTAGTGGAAACCAAGGTGGAAGAGGAGGAGAAAGTCGCGGAGTCTTTGGATGAGACTGGTGAATCTTCGCCGGCCATCGCAGAGGAGGTGTTGAAACAGGTTGAGGAAAAAACATTGTCATATGTGGAAGAGAGTAATGGGGTTGCTCTAGTCGAGACCGATCTGGTGTCCAAGGAGGATGAGAAGGAAGCGGTTCCTGCTGCTGTTGCAGATACTGTGTCGAAGGGGATCGAGGAAACAAGGTTACCGGTTTCCAAAGAGCAAACTGGGGAGTCATCGGGTACTGCTTACAAGGAAGAGGTTCCTGCAGTCGAATCAGCTGATGCCGGACAAGATCGTGGCAAGGCTGATCGATCCCCGAAAGCACAGGAAATCCGTCGATTGTATCTGTCGCCGGACCCCCCCTGCAGCCGACTTCATGGAAGAGTTGCTGTGGACTCTTCGAAATTCTGCACCGAAGATCCGATAGATAATTCAAGAAACGAAGCATTGTCGCTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

28.68

Weight (kDa)

4.15

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 2 cut(s) 138, 344
AciI CCGC 5 cut(s) 5, 136, 191, 344, 497
AclWI GGATC 4 cut(s) 300, 542, 654, 761
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 1 cut(s) 752
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 2 cut(s) 281, 589
AgeI ACCGGT 1 cut(s) 553
AgsI TTSAA 6 cut(s) 47, 83, 168, 272, 400, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 2 cut(s) 101, 626
AluI AGCT 2 cut(s) 101, 626
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 5 cut(s) 227, 256, 257, 353, 455
AlwI GGATC 4 cut(s) 300, 542, 654, 761
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 2 cut(s) 506, 714
ApoI RAATTY 1 cut(s) 752
AsiGI ACCGGT 1 cut(s) 553
Asp700I GAANNNNTTC 3 cut(s) 42, 498, 606
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 1 cut(s) 377
AsuII TTCGAA 2 cut(s) 14, 749
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 202
BbvI GCAGC 2 cut(s) 493, 726
BccI CCATC 2 cut(s) 23, 389
BcoDI GTCTC 5 cut(s) 227, 256, 257, 353, 455
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 2 cut(s) 612, 712
BfoI RGCGCY 1 cut(s) 36
BisI GCNGC 2 cut(s) 507, 715
BlsI GCNGC 2 cut(s) 508, 716
Bme18I GGWCC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 4 cut(s) 34, 501, 609, 705
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 133, 619
BmuI ACTGGG 1 cut(s) 582
Bpu14I TTCGAA 2 cut(s) 14, 749
Bsa29I ATCGAT 1 cut(s) 658
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 2 cut(s) 227, 455
BsaJI CCNNGG 2 cut(s) 318, 477
BsaWI WCCGGW 2 cut(s) 49, 553
Bse118I RCCGGY 2 cut(s) 376, 553
Bse1I ACTGG 2 cut(s) 367, 577
BseCI ATCGAT 1 cut(s) 658
BseDI CCNNGG 2 cut(s) 318, 477
BseGI GGATG 5 cut(s) 34, 61, 187, 361, 490
BseNI ACTGG 2 cut(s) 367, 577
BseRI GAGGAG 4 cut(s) 245, 344, 347, 404
BseXI GCAGC 2 cut(s) 493, 726
BsgI GTGCAG 1 cut(s) 742
Bsh1236I CGCG 2 cut(s) 138, 344
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 32
BshTI ACCGGT 1 cut(s) 553
BshVI ATCGAT 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 202
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 5 cut(s) 50, 377, 554, 633, 701
BslFI GGGAC 1 cut(s) 107
BsmAI GTCTC 5 cut(s) 227, 256, 257, 353, 455
BsmBI CGTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 380
Bso31I GGTCTC 2 cut(s) 227, 455
BsoBI CYCGRG 1 cut(s) 201
Bsp119I TTCGAA 2 cut(s) 14, 749
Bsp1286I GDGCHC 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
BspACI CCGC 5 cut(s) 5, 136, 191, 344, 497
BspANI GGCC 1 cut(s) 380
BspDI ATCGAT 1 cut(s) 658
BspFNI CGCG 2 cut(s) 138, 344
BspLI GGNNCC 4 cut(s) 34, 501, 609, 705
BspMAI CTGCAG 2 cut(s) 616, 716
BspPI GGATC 4 cut(s) 300, 542, 654, 761
BspT104I TTCGAA 2 cut(s) 14, 749
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 2 cut(s) 227, 455
BsrFI RCCGGY 2 cut(s) 376, 553
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 2 cut(s) 367, 577
BssAI RCCGGY 2 cut(s) 376, 553
BssECI CCNNGG 2 cut(s) 318, 477
BssMI GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 2 cut(s) 318, 477
Bst4CI ACNGT 3 cut(s) 113, 268, 523
Bst6I CTCTTC 6 cut(s) 180, 321, 429, 597, 724, 751
BstACI GRCGYC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 279
BstBI TTCGAA 2 cut(s) 14, 749
BstC8I GCNNGC 2 cut(s) 123, 378
BstEII GGTNACC 1 cut(s) 549
BstF5I GGATG 5 cut(s) 34, 61, 187, 361, 490
BstFNI CGCG 2 cut(s) 138, 344
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 7 cut(s) 295, 469, 537, 643, 658, 662, 769
BstMAI GTCTC 5 cut(s) 227, 256, 257, 353, 455
BstMBI GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
BstMWI GCNNNNNNNGC 4 cut(s) 197, 206, 503, 512
BstPI GGTNACC 1 cut(s) 549
BstSFI CTRYAG 2 cut(s) 612, 712
BstUI CGCG 2 cut(s) 138, 344
BstV1I GCAGC 2 cut(s) 493, 726
BstX2I RGATCY 1 cut(s) 766
BstYI RGATCY 1 cut(s) 766
Bsu15I ATCGAT 1 cut(s) 658
BsuRI GGCC 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 658
BtgZI GCGATG 2 cut(s) 153, 367
BtsCI GGATG 5 cut(s) 34, 61, 187, 361, 490
Cac8I GCNNGC 2 cut(s) 123, 378
CaiI CAGNNNCTG 1 cut(s) 521
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 2 cut(s) 376, 553
Cfr13I GGNCC 1 cut(s) 703
ClaI ATCGAT 1 cut(s) 658
Csp6I GTAC 2 cut(s) 280, 588
CspAI ACCGGT 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 1 cut(s) 725
CviJI RGCY 6 cut(s) 101, 121, 380, 626, 653, 717
CviKI_1 RGCY 6 cut(s) 101, 121, 380, 626, 653, 717
CviQI GTAC 2 cut(s) 280, 588
DinI GGCGCC 1 cut(s) 34
DpnI GATC 7 cut(s) 294, 468, 536, 642, 657, 661, 768
DpnII GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 6 cut(s) 180, 321, 429, 597, 724, 751
EarI CTCTTC 6 cut(s) 180, 321, 429, 597, 724, 751
EciI GGCGGA 2 cut(s) 20, 206
Eco130I CCWWGG 2 cut(s) 318, 477
Eco31I GGTCTC 2 cut(s) 227, 455
Eco47I GGWCC 1 cut(s) 703
Eco88I CYCGRG 1 cut(s) 201
Eco91I GGTNACC 1 cut(s) 549
EcoO65I GGTNACC 1 cut(s) 549
EcoT14I CCWWGG 2 cut(s) 318, 477
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 2 cut(s) 318, 477
Esp3I CGTCTC 1 cut(s) 257
FaeI CATG 1 cut(s) 728
FaiI YATR 3 cut(s) 427, 429, 726
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 724
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 507, 715
FokI GGATG 5 cut(s) 41, 68, 194, 368, 497
Fsp4HI GCNGC 2 cut(s) 507, 715
FspBI CTAG 1 cut(s) 455
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 507, 715
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 380
HapII CCGG 5 cut(s) 50, 377, 554, 633, 701
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 1 cut(s) 728
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HpaII CCGG 5 cut(s) 50, 377, 554, 633, 701
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 280, 742
Hpy188I TCNGA 3 cut(s) 118, 181, 771
Hpy188III TCNNGA 2 cut(s) 460, 783
Hpy8I GTNNAC 2 cut(s) 280, 742
Hpy99I CGWCG 1 cut(s) 687
HpyAV CCTTC 3 cut(s) 188, 484, 523
HpyCH4III ACNGT 3 cut(s) 113, 268, 523
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 5 cut(s) 125, 515, 614, 714, 759
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 206, 503, 512
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 728
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
Lsp1109I GCAGC 2 cut(s) 493, 726
LweI GCATC 2 cut(s) 133, 619
MaeI CTAG 1 cut(s) 455
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 549
MalI GATC 7 cut(s) 294, 468, 536, 642, 657, 661, 768
MboI GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
MflI RGATCY 1 cut(s) 766
MhlI GDGCHC 1 cut(s) 202
MluCI AATT 2 cut(s) 752, 778
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 4 cut(s) 59, 356, 587, 737
MmeI TCCRAC 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 376
MroXI GAANNNNTTC 3 cut(s) 42, 498, 606
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 5 cut(s) 50, 377, 554, 633, 701
MvnI CGCG 2 cut(s) 138, 344
MwoI GCNNNNNNNGC 4 cut(s) 197, 206, 503, 512
NaeI GCCGGC 1 cut(s) 378
NarI GGCGCC 1 cut(s) 33
NdeI CATATG 1 cut(s) 427
NdeII GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
NgoMIV GCCGGC 1 cut(s) 376
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 4 cut(s) 34, 501, 609, 705
NspV TTCGAA 2 cut(s) 14, 749
PaeR7I CTCGAG 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 378
PdmI GAANNNNTTC 3 cut(s) 42, 498, 606
PfeI GAWTC 7 cut(s) 8, 83, 152, 215, 272, 368, 620
PinAI ACCGGT 1 cut(s) 553
PkrI GCNGC 2 cut(s) 508, 716
PleI GAGTC 4 cut(s) 59, 355, 586, 737
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 4 cut(s) 59, 355, 586, 737
PspEI GGTNACC 1 cut(s) 549
PspN4I GGNNCC 4 cut(s) 34, 501, 609, 705
PspPI GGNCC 1 cut(s) 703
PspXI VCTCGAGB 1 cut(s) 201
PstI CTGCAG 2 cut(s) 616, 716
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 766
PvuII CAGCTG 1 cut(s) 626
RsaI GTAC 2 cut(s) 281, 589
RsaNI GTAC 2 cut(s) 280, 588
SatI GCNGC 2 cut(s) 507, 715
Sau3AI GATC 7 cut(s) 292, 466, 534, 640, 655, 659, 766
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 4 cut(s) 59, 356, 587, 737
SduI GDGCHC 1 cut(s) 202
SfaNI GCATC 2 cut(s) 133, 619
SfcI CTRYAG 2 cut(s) 612, 712
SfoI GGCGCC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 201
SfuI TTCGAA 2 cut(s) 14, 749
SinI GGWCC 1 cut(s) 703
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 752, 778
SsiI CCGC 5 cut(s) 5, 136, 191, 344, 497
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 1 cut(s) 455
StyI CCWWGG 2 cut(s) 318, 477
TaaI ACNGT 3 cut(s) 113, 268, 523
TaiI ACGT 1 cut(s) 99
TaqII GACCGA 2 cut(s) 251, 479
TasI AATT 2 cut(s) 752, 778
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 7 cut(s) 8, 83, 152, 215, 272, 368, 620
TseI GCWGC 2 cut(s) 506, 714
TspDTI ATGAA 2 cut(s) 198, 713
TspGWI ACGGA 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 1 cut(s) 752
XhoI CTCGAG 1 cut(s) 201
XmnI GAANNNNTTC 3 cut(s) 42, 498, 606
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.