Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016963

Physical Location & Seq

Genomic Coordinates Forward (+)

11734187 .. 11735536

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGACGTAGAAATGGACGCTTCTCCAAGCTTCTTCGACCCCGAGGACCTCACAATCAGAGAGAAGTTTCGTCGATACGGGAAAAGGCACTTGACTTCAAGCATGTCGCCCCACCAAGATAATTCAGCTTCTAAATACAGTGAATCTAGGCTACTATACGACGGGCAGAATTTACATAGCCCGACCAATGCTGCACTTCTTCTTGAAAATATTAAACAAGAGGTTGAAGGCATTGATGCTGATCACGTGGAAAGAACTTCTTTCTTAAGAAGGAGGTCGCCCATTGATGGCACAGATATGGATGATGGTGCTGGGCCAGTCCACCATTCAATCAAAGTTTTGAAGAATGAGGAGGATTCACTGGCTGATGATGGAGATCCAACCTTTAGCCTTTTTGCATCTCTACTTGATTCTGCTCTTCAAGGGTTGTTGCCTTTTCCTGACTTGATACTAAGATTTGAAGAATCCTGCCGAAATGTTTCAGAGTCGATTAGGTATGGTTTCAATATAAGGCATCGTGTTGTAGAGGACAAGTTGATGAGGCAGAAGGCTCAACTCCTGCTTGATGAGGCTGCTTCTTGGTCCCTTTTGTGGTGCCTTTATGGGAAAGGAAATCTATCTCTAACCTCTGAAGTTTTATGCTATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000972 GO:0000973 GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006355 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016043 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031326 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051292 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nup84_Nup100

Protein Analysis

217

Amino Acids

24.51

Weight (kDa)

4.94

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016963)

Species	Orthologous Gene IDs
pyrus_communis	pycom09g09660 pycom17g14180
rosa_laevigata	RLG00000001874 RLG00000027916
rosa_multiflora	Rmu_co8207192.1_g000001 Rmu_sc0023243.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151190 Rroxscaffold_3G00232580
rosa_rugosa	Rorug01G0317100
rosa_samantha	Rh3BG172100 Rh7AG386600 Rh7AG395400 Rh7CG405900 Rh7CG414100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	594
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	651
AcvI	CACGTG	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	287, 591
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	8 cut(s)	99, 206, 227, 330, 343, 422, 461, 505
AluBI	AGCT	2 cut(s)	30, 128
AluI	AGCT	2 cut(s)	30, 128
AlwI	GGATC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	2 cut(s)	191, 572
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	46, 314, 582
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	46, 582
BanI	GGYRCC	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	178, 559
BccI	CCATC	3 cut(s)	281, 299, 365
BclI	TGATCA	1 cut(s)	241
BfaI	CTAG	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	265
BisI	GCNGC	2 cut(s)	192, 573
BlsI	GCNGC	2 cut(s)	193, 574
Bme18I	GGWCC	2 cut(s)	46, 582
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	46, 314, 582
BmiI	GGNNCC	2 cut(s)	584, 596
BmsI	GCATC	3 cut(s)	226, 407, 523
BsaAI	YACGTR	1 cut(s)	247
BsaBI	GATNNNNATC	2 cut(s)	240, 375
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 591
Bse1I	ACTGG	2 cut(s)	317, 366
Bse8I	GATNNNNATC	2 cut(s)	240, 375
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	2 cut(s)	240, 375
BseLI	CCNNNNNNNGG	2 cut(s)	287, 591
BseNI	ACTGG	2 cut(s)	317, 366
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	178, 559
BseYI	CCCAGC	1 cut(s)	311
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	316
BshNI	GGYRCC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	568
BslI	CCNNNNNNNGG	2 cut(s)	287, 591
BsmFI	GGGAC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	241, 376
BspANI	GGCC	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	584, 596
BspPI	GGATC	1 cut(s)	371
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	317, 366
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	241, 376
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	247
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	244, 379
BstMBI	GATC	2 cut(s)	241, 376
BstNSI	RCATGY	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	178, 559
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	145, 359
Cfr13I	GGNCC	3 cut(s)	46, 314, 582
CseI	GACGC	1 cut(s)	26
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	9 cut(s)	30, 128, 151, 180, 316, 365, 390, 551, 572
CviKI_1	RGCY	9 cut(s)	30, 128, 151, 180, 316, 365, 390, 551, 572
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	2 cut(s)	243, 378
DpnII	GATC	2 cut(s)	241, 376
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	46, 582
Eco57I	CTGAAG	1 cut(s)	651
Eco72I	CACGTG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	41
EcoO109I	RGGNCCY	1 cut(s)	46
FaeI	CATG	1 cut(s)	106
FaiI	YATR	9 cut(s)	104, 157, 177, 299, 498, 509, 603, 640, 645
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	1 cut(s)	102
FbaI	TGATCA	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	192, 573
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	192, 573
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	192, 573
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	316
HgaI	GACGC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	5 cut(s)	143, 356, 410, 464, 485
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	3 cut(s)	59, 484, 631
Hpy188III	TCNNGA	2 cut(s)	203, 440
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	2 cut(s)	75, 164
HpyAV	CCTTC	3 cut(s)	221, 264, 541
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	2 cut(s)	6, 246
HpyCH4V	TGCA	2 cut(s)	194, 398
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	2 cut(s)	6, 246
Hsp92II	CATG	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	241, 376
LguI	GCTCTTC	1 cut(s)	423
LpnPI	CCDG	6 cut(s)	297, 330, 347, 453, 481, 572
Lsp1109I	GCAGC	2 cut(s)	178, 559
LweI	GCATC	3 cut(s)	226, 407, 523
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	6, 246
MalI	GATC	2 cut(s)	243, 378
MboI	GATC	2 cut(s)	241, 376
MboII	GAAGA	5 cut(s)	25, 191, 355, 410, 473
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	2 cut(s)	121, 169
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	404
MroXI	GAANNNNTTC	1 cut(s)	478
MseI	TTAA	2 cut(s)	213, 266
MslI	CAYNNNNRTG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	265
NdeII	GATC	2 cut(s)	241, 376
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	2 cut(s)	584, 596
NspI	RCATGY	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	143, 356, 410, 464
PkrI	GCNGC	2 cut(s)	193, 574
PleI	GAGTC	1 cut(s)	493
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspCI	CACGTG	1 cut(s)	247
PspFI	CCCAGC	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	584, 596
PspPI	GGNCC	3 cut(s)	46, 314, 582
PspPPI	RGGWCCY	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	213, 266
SatI	GCNGC	2 cut(s)	192, 573
Sau3AI	GATC	2 cut(s)	241, 376
Sau96I	GGNCC	3 cut(s)	46, 314, 582
SchI	GAGTC	1 cut(s)	494
SfaNI	GCATC	3 cut(s)	226, 407, 523
SinI	GGWCC	2 cut(s)	46, 582
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	2 cut(s)	121, 169
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	2 cut(s)	9, 249
TaqI	TCGA	3 cut(s)	36, 73, 488
TasI	AATT	2 cut(s)	121, 169
TfiI	GAWTC	4 cut(s)	143, 356, 410, 464
Tru1I	TTAA	2 cut(s)	213, 266
Tru9I	TTAA	2 cut(s)	213, 266
TscAI	CASTG	2 cut(s)	145, 366
TseI	GCWGC	2 cut(s)	191, 572
TspRI	CASTG	2 cut(s)	145, 366
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	2 cut(s)	46, 582
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	478
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.