Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Reverse (-)

12649361 .. 12650125

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGGATTGTAAAACAAGTAATCAGTGGCTTCAGAAGTAGAACAAAAGAGAAAATTGAAGATCGAAACTGTGTATATGAGATGATTTGGGATGCAGAAGGATCAATGCATCTTGTCAAGAAAGCCCTAGGCACTTCTATTGCACGTTCAATCGAGAGAAACTCAGTTGAAAGAGGTAATGCCCTGCTGCAGTCCGCAGCTAGAAAGAATATTTCCCAGGACATAGAGGTTTCTGTGAATGGAGACGCTGATACGGATTCTGTGGTTGATTCATTGGCAAAGTTACTGCCTAGAGCAAGCAGATCAAGGAAAAAGACGGTGACCAGAAGATTGGTGCAGACATTACTAATGGTCATGATCATCGCTGCAGTAAATGTACCCCTCTATGTGATGTTACTTTTCAAGGATTGGATCGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

9.8

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	109, 419
AcuI	CTGAAG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	378
AgsI	TTSAA	4 cut(s)	59, 150, 170, 403
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	109, 419
ApeKI	GCWGC	3 cut(s)	187, 197, 365
AspA2I	CCTAGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	331
AvrII	CCTAGG	1 cut(s)	127
BbvI	GCAGC	3 cut(s)	174, 209, 352
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	3 cut(s)	128, 201, 291
BfmI	CTRYAG	2 cut(s)	188, 366
BisI	GCNGC	3 cut(s)	188, 198, 366
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	3 cut(s)	189, 199, 367
Bme1390I	CCNGG	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	82, 118
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BsaJI	CCNNGG	2 cut(s)	127, 216
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	127, 216
BseGI	GGATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	174, 209, 352
BsgI	GTGCAG	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	237
BsmBI	CGTCTC	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	61, 101, 302, 357, 411
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	354
BspMAI	CTGCAG	2 cut(s)	192, 370
BspPI	GGATC	2 cut(s)	109, 419
BssECI	CCNNGG	2 cut(s)	127, 216
BssMI	GATC	5 cut(s)	61, 101, 302, 357, 411
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	71, 319
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	163
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	5 cut(s)	64, 104, 305, 360, 414
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	5 cut(s)	61, 101, 302, 357, 411
BstNI	CCWGG	1 cut(s)	218
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	188, 366
BstV1I	GCAGC	3 cut(s)	174, 209, 352
BstXI	CCANNNNNNTGG	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	354
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	3 cut(s)	30, 125, 200
CviKI_1	RGCY	3 cut(s)	30, 125, 200
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	5 cut(s)	63, 103, 304, 359, 413
DpnII	GATC	5 cut(s)	61, 101, 302, 357, 411
Eco130I	CCWWGG	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	16
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	127
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	1 cut(s)	358
FaiI	YATR	5 cut(s)	76, 78, 224, 356, 387
FatI	CATG	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	188, 198, 366
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	3 cut(s)	188, 198, 366
FspBI	CTAG	3 cut(s)	128, 201, 291
GluI	GCNGC	3 cut(s)	188, 198, 366
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	358
HinfI	GANTC	2 cut(s)	257, 269
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	3 cut(s)	118, 154, 355
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	2 cut(s)	71, 319
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	95, 109, 143, 190, 337, 368
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	5 cut(s)	61, 101, 302, 357, 411
LpnPI	CCDG	4 cut(s)	197, 203, 230, 337
Lsp1109I	GCAGC	3 cut(s)	174, 209, 352
LweI	GCATC	2 cut(s)	82, 118
MaeI	CTAG	3 cut(s)	128, 201, 291
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	3 cut(s)	282, 319, 393
MalI	GATC	5 cut(s)	63, 103, 304, 359, 413
MboI	GATC	5 cut(s)	61, 101, 302, 357, 411
MboII	GAAGA	2 cut(s)	71, 339
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	3 cut(s)	167, 220, 392
Mph1103I	ATGCAT	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
NdeII	GATC	5 cut(s)	61, 101, 302, 357, 411
NlaIII	CATG	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	111
PagI	TCATGA	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	257, 269
PkrI	GCNGC	3 cut(s)	189, 199, 367
Psp6I	CCWGG	1 cut(s)	216
PspEI	GGTNACC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	216
PstI	CTGCAG	2 cut(s)	192, 370
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SatI	GCNGC	3 cut(s)	188, 198, 366
Sau3AI	GATC	5 cut(s)	61, 101, 302, 357, 411
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	4 cut(s)	148, 178, 202, 231
SfaNI	GCATC	2 cut(s)	82, 118
SfcI	CTRYAG	2 cut(s)	188, 366
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	195
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	3 cut(s)	128, 201, 291
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	2 cut(s)	71, 319
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	64, 153, 414
TasI	AATT	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	257, 269
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	187, 197, 365
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	31
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	3 cut(s)	128, 201, 291
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.