Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Reverse (-)

12650553 .. 12650938

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGCTTTTCAGATGCTGAGTTTACCACGGATTCTGCGATCTGCTAATGGTCAAGAAGTAATGAATCGGAATTACATTACAGAGGAATCATCAAACTACTTATTGGATTCAATTAAACTGGTTAGTGCTGTATCCTCTCTATCATGCATCTTGTCTGCAAGATCAGTGCCGTGTGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

61

Amino Acids

6.62

Weight (kDa)

6.03

Isoelectric Point (pI)

70.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	111
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	154
BciVI	GTATCC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	142
BmsI	GCATC	2 cut(s)	3, 156
BsaJI	CCNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	1 cut(s)	123
Bsp143I	GATC	3 cut(s)	38, 161, 175
BspCNI	CTCAG	1 cut(s)	9
BspPI	GGATC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	3 cut(s)	38, 161, 175
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	26
BstKTI	GATC	3 cut(s)	41, 164, 178
BstMBI	GATC	3 cut(s)	38, 161, 175
BsuI	GTATCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	26
BtsIMutI	CAGTG	1 cut(s)	171
CaiI	CAGNNNCTG	1 cut(s)	16
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	3 cut(s)	40, 163, 177
DpnII	GATC	3 cut(s)	38, 161, 175
EcoT22I	ATGCAT	1 cut(s)	149
FaeI	CATG	1 cut(s)	147
FaiI	YATR	2 cut(s)	145, 181
FatI	CATG	1 cut(s)	143
FspEI	CC	8 cut(s)	13, 33, 39, 52, 68, 89, 104, 148
Hin1II	CATG	1 cut(s)	147
HinfI	GANTC	4 cut(s)	31, 64, 86, 107
Hpy166II	GTNNAC	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	12, 69
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	147, 158
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	38, 161, 175
LpnPI	CCDG	1 cut(s)	104
LweI	GCATC	2 cut(s)	3, 156
MalI	GATC	3 cut(s)	40, 163, 177
MboI	GATC	3 cut(s)	38, 161, 175
MluCI	AATT	2 cut(s)	70, 111
MnlI	CCTC	2 cut(s)	76, 145
Mph1103I	ATGCAT	1 cut(s)	149
MseI	TTAA	1 cut(s)	114
NdeII	GATC	3 cut(s)	38, 161, 175
NlaIII	CATG	1 cut(s)	147
NsiI	ATGCAT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PfeI	GAWTC	4 cut(s)	31, 64, 86, 107
PstNI	CAGNNNCTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	38, 161, 175
SfaNI	GCATC	2 cut(s)	3, 156
SgeI	CNNG	6 cut(s)	39, 65, 131, 156, 163, 171
Sse9I	AATT	2 cut(s)	70, 111
TasI	AATT	2 cut(s)	70, 111
TfiI	GAWTC	4 cut(s)	31, 64, 86, 107
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	77
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	171
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.