pycom17g15490

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015095
Physical Location & Seq
Forward (+)
13516193 .. 13518053
1861 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGAAGGAAATGGTGGATTACCGATCGGAAGTAGGGAAGCCGGCGGTCGTGCTAATATGCGGAACCTTAGTCTATTACCACTGCGCCGACCGCAACTCCAGCCTCCTCTCTCTCGTCTCCGACGTCTTCATCGTCCTCCTCTGCTCACTTGCCATTCTCGGCCTCCTCTTTCGCCAAATGAACGTCTCGGTACCAGTGGATCCACTTGAGTGGCAGATTTCGCAGGACACTGCTAATAGCATTGTTGCGTGGTTAGCCAATACCGTAGGAGCAGCTGAGTCTGTATTGAGGGTTGCGGCCACAGGGCATGACAAGAGGTTGTTTTTCAAGGTAGTGTTTAGTCTCTACATGCTATCGGCTTTGGGACGGTTGATTTCAGGTCTTACAGTGGCCTATATTGGTACGTTGGTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

139

Amino Acids

15.03

Weight (kDa)

6.7

Isoelectric Point (pI)

21.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 15 - 137 4.5e-18 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16825 AT1G78895
fragaria_vesca FvH4_6g36900 FvH4_6g36900
malus_domestica MD09G1166000.v1.1 MD17G1161700.v1.1
prunus_persica Prupe.3G023400_v2.0.a1
pyrus_communis pycom17g15490
rosa_chinensis RchiOBHm_Chr2g0149331
rosa_laevigata RLG00000020393
rosa_multiflora Rmu_sc0000873.1_g000016
rosa_roxburghii Rroxscaffold_2G00098210
rosa_rugosa Rorug02G0410600
rosa_samantha Rh2AG471300 Rh2CG457200
rosa_wichuraiana Rw2G038340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
Acc65I GGTACC 1 cut(s) 190
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 4 cut(s) 44, 60, 91, 296
AclWI GGATC 2 cut(s) 194, 207
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 2 cut(s) 192, 403
AgsI TTSAA 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 208
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw26I GTCTC 3 cut(s) 121, 190, 347
AlwI GGATC 2 cut(s) 194, 207
AoxI GGCC 3 cut(s) 160, 297, 390
ApeKI GCWGC 1 cut(s) 272
Asp718I GGTACC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 86
BaeI ACNNNNGTAYC 1 cut(s) 393
BamHI GGATCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 284
BcoDI GTCTC 3 cut(s) 121, 190, 347
BisI GCNGC 2 cut(s) 273, 297
BlsI GCNGC 2 cut(s) 274, 298
BmiI GGNNCC 3 cut(s) 64, 192, 201
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 1 cut(s) 194
BseRI GAGGAG 3 cut(s) 95, 128, 155
BseXI GCAGC 1 cut(s) 284
Bsh1285I CGRYCG 3 cut(s) 26, 48, 91
BshFI GGCC 3 cut(s) 162, 299, 392
BshNI GGYRCC 1 cut(s) 190
BsiEI CGRYCG 3 cut(s) 26, 48, 91
BsiSI CCGG 1 cut(s) 41
BslFI GGGAC 1 cut(s) 378
BsmAI GTCTC 3 cut(s) 121, 190, 347
BsmBI CGTCTC 2 cut(s) 121, 190
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 3 cut(s) 162, 299, 392
Bsp143I GATC 2 cut(s) 23, 199
BspACI CCGC 4 cut(s) 44, 60, 91, 296
BspANI GGCC 3 cut(s) 162, 299, 392
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 64, 192, 201
BspPI GGATC 2 cut(s) 194, 207
BspT107I GGYRCC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 1 cut(s) 194
BssAI RCCGGY 1 cut(s) 40
BssMI GATC 2 cut(s) 23, 199
BssNI GRCGYC 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 265, 369, 388
BstACI GRCGYC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 67, 276
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 2 cut(s) 26, 202
BstMAI GTCTC 3 cut(s) 121, 190, 347
BstMBI GATC 2 cut(s) 23, 199
BstMCI CGRYCG 3 cut(s) 26, 48, 91
BstMWI GCNNNNNNNGC 4 cut(s) 90, 99, 220, 254
BstNSI RCATGY 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 284
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 3 cut(s) 162, 299, 392
BtsI GCAGTG 2 cut(s) 79, 228
BtsIMutI CAGTG 4 cut(s) 79, 201, 228, 393
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 40
Csp6I GTAC 2 cut(s) 191, 402
CviAII CATG 2 cut(s) 308, 349
CviJI RGCY 8 cut(s) 40, 102, 162, 257, 275, 299, 359, 392
CviKI_1 RGCY 8 cut(s) 40, 102, 162, 257, 275, 299, 359, 392
CviQI GTAC 2 cut(s) 191, 402
DdeI CTNAG 2 cut(s) 67, 276
DpnI GATC 2 cut(s) 25, 201
DpnII GATC 2 cut(s) 23, 199
EaeI YGGCCR 1 cut(s) 297
Esp3I CGTCTC 2 cut(s) 121, 190
FaeI CATG 2 cut(s) 311, 352
FaiI YATR 4 cut(s) 58, 309, 350, 396
FaqI GGGAC 1 cut(s) 378
FatI CATG 2 cut(s) 307, 348
Fnu4HI GCNGC 2 cut(s) 273, 297
Fsp4HI GCNGC 2 cut(s) 273, 297
GlaI GCGC 1 cut(s) 85
GluI GCNGC 2 cut(s) 273, 297
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 3 cut(s) 162, 299, 392
HapII CCGG 1 cut(s) 41
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 2 cut(s) 311, 352
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 28, 121
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 3 cut(s) 265, 369, 388
HpyCH4IV ACGT 3 cut(s) 123, 183, 404
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 99, 220, 254
HpyF3I CTNAG 2 cut(s) 67, 276
HpySE526I ACGT 3 cut(s) 123, 183, 404
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 2 cut(s) 311, 352
HspAI GCGC 1 cut(s) 84
KpnI GGTACC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 23, 199
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 6 cut(s) 54, 112, 207, 209, 288, 363
Lsp1109I GCAGC 1 cut(s) 284
MaeII ACGT 3 cut(s) 123, 183, 404
MalI GATC 2 cut(s) 25, 201
MboI GATC 2 cut(s) 23, 199
MboII GAAGA 1 cut(s) 118
MflI RGATCY 1 cut(s) 199
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 8 cut(s) 113, 116, 146, 149, 173, 176, 282, 309
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 1 cut(s) 415
MslI CAYNNNNRTG 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 41
MwoI GCNNNNNNNGC 4 cut(s) 90, 99, 220, 254
NaeI GCCGGC 1 cut(s) 42
NdeII GATC 2 cut(s) 23, 199
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 2 cut(s) 311, 352
NlaIV GGNNCC 3 cut(s) 64, 192, 201
NmeAIII GCCGAG 1 cut(s) 138
NspI RCATGY 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 208
PcsI WCGNNNNNNNCGW 2 cut(s) 120, 129
PdiI GCCGGC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 274, 298
Ple19I CGATCG 1 cut(s) 26
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PspN4I GGNNCC 3 cut(s) 64, 192, 201
PsuI RGATCY 1 cut(s) 199
PvuI CGATCG 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 192, 403
RsaNI GTAC 2 cut(s) 191, 402
RseI CAYNNNNRTG 1 cut(s) 208
SaqAI TTAA 1 cut(s) 415
SatI GCNGC 2 cut(s) 273, 297
Sau3AI GATC 2 cut(s) 23, 199
SchI GAGTC 1 cut(s) 287
SetI ASST 8 cut(s) 68, 126, 186, 277, 320, 333, 382, 407
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SsiI CCGC 4 cut(s) 44, 60, 91, 296
TaaI ACNGT 3 cut(s) 265, 369, 388
TaiI ACGT 3 cut(s) 126, 186, 407
TauI GCSGC 1 cut(s) 299
Tru1I TTAA 1 cut(s) 415
Tru9I TTAA 1 cut(s) 415
TscAI CASTG 4 cut(s) 86, 201, 235, 393
TseI GCWGC 1 cut(s) 272
TspDTI ATGAA 3 cut(s) 17, 118, 194
TspRI CASTG 4 cut(s) 86, 201, 235, 393
XceI RCATGY 1 cut(s) 352
ZraI GACGTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.