pycom17g15620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014773
Physical Location & Seq
Forward (+)
13669069 .. 13669490
422 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGGAGGACGATGATGAGAAAAAAGCCTACGCTTGTCCAACATCATCTCCTCCAACACCTCCCTCTCCACTTCCAATTAGTGTAGGACCCGGTAACCAAAGGTACATATTCTCGCCGTCTCCCTCCCCTTCGCCGCCTTTCTCTCAGCCCCCCTCGAGCCACGCGTCCGCGGAGAACCTCCCTCTTCTGCCTCATGGTCAGAGGCTCCCTAGTAGTCCTCCAGCACCATCACCATTCTCGTTGGATTATCGGAGACCACCCGAGGATTCGGATTCCAAGAGCTCATGCCTAGTAGACTTAATTTCAGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.1

Weight (kDa)

4.67

Isoelectric Point (pI)

115.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014773)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g37030
malus_domestica MD09G1164800.v1.1 MD17G1163400.v1.1
prunus_persica Prupe.3G022200_v2.0.a1 Prupe.3G022200_v2.0.a1
pyrus_communis pycom09g08200 pycom17g15620
rosa_chinensis RchiOBHm_Chr2g0149581
rosa_laevigata RLG00000020426
rosa_multiflora Rmu_sc0006867.1_g000022
rosa_roxburghii Rroxscaffold_2G00097950
rosa_rugosa Rorug02G0412600
rosa_samantha Rh2AG473100 Rh2BG485100 Rh2CG458900 Rh2DG494300
rosa_wichuraiana Rw2G038580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AccII CGCG 2 cut(s) 164, 170
AciI CCGC 3 cut(s) 134, 168, 170
AfaI GTAC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 162
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 123, 247
Ama87I CYCGRG 2 cut(s) 154, 260
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 222
AvaI CYCGRG 2 cut(s) 154, 260
AvaII GGWCC 1 cut(s) 86
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BccI CCATC 1 cut(s) 235
BceAI ACGGC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 123, 247
BfaI CTAG 2 cut(s) 210, 290
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 2 cut(s) 154, 260
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 88, 206
BmrFI CCNGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 168, 261
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
BseDI CCNNGG 2 cut(s) 168, 261
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 39
Bsh1236I CGCG 2 cut(s) 164, 170
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 2 cut(s) 154, 260
BsiSI CCGG 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 123, 247
BsmBI CGTCTC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 2 cut(s) 154, 260
Bsp1286I GDGCHC 1 cut(s) 284
BspACI CCGC 3 cut(s) 134, 168, 170
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 2 cut(s) 164, 170
BspLI GGNNCC 2 cut(s) 88, 206
BspTNI GGTCTC 1 cut(s) 247
BssECI CCNNGG 2 cut(s) 168, 261
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 144
BstDSI CCRYGG 1 cut(s) 168
BstEII GGTNACC 1 cut(s) 92
BstFNI CGCG 2 cut(s) 164, 170
BstMAI GTCTC 2 cut(s) 123, 247
BstPI GGTNACC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 88
BstUI CGCG 2 cut(s) 164, 170
BtgI CCRYGG 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 86
Cfr42I CCGCGG 1 cut(s) 171
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 194, 285
CviJI RGCY 5 cut(s) 26, 148, 159, 205, 282
CviKI_1 RGCY 5 cut(s) 26, 148, 159, 205, 282
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 154, 260
Eco91I GGTNACC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 86
EcoO65I GGTNACC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 197, 288
FaiI YATR 3 cut(s) 107, 195, 286
FatI CATG 2 cut(s) 193, 284
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 210, 290
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 204
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 197, 288
HinfI GANTC 2 cut(s) 266, 272
HpaII CCGG 1 cut(s) 90
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 4 cut(s) 201, 252, 271, 307
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 138
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 2 cut(s) 197, 288
KspI CCGCGG 1 cut(s) 171
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 2 cut(s) 103, 234
MaeI CTAG 2 cut(s) 210, 290
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 75, 300
MluI ACGCGT 1 cut(s) 162
MmeI TCCRAC 3 cut(s) 62, 77, 222
MseI TTAA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 90
MvnI CGCG 2 cut(s) 164, 170
NciI CCSGG 1 cut(s) 90
NlaIII CATG 2 cut(s) 197, 288
NlaIV GGNNCC 2 cut(s) 88, 206
PaeR7I CTCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 2 cut(s) 266, 272
PkrI GCNGC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 284
Psp5II RGGWCCY 1 cut(s) 86
PspEI GGTNACC 1 cut(s) 92
PspN4I GGNNCC 2 cut(s) 88, 206
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
PspXI VCTCGAGB 1 cut(s) 154
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 284
SacII CCGCGG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 134
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 284
SetI ASST 4 cut(s) 61, 104, 180, 284
Sfr274I CTCGAG 1 cut(s) 154
Sfr303I CCGCGG 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 2 cut(s) 75, 300
SsiI CCGC 3 cut(s) 134, 168, 170
SspMI CTAG 2 cut(s) 210, 290
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 155
TasI AATT 2 cut(s) 75, 300
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 266, 272
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 2 cut(s) 210, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.