Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009310

Physical Location & Seq

Genomic Coordinates Forward (+)

14019800 .. 14020546

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTCCTCGTCACCAAGCCTCGGTTGCTCTTTCAAACTCAAATGATGAAGGAAGTTATGCCGGATCCTCTGGTGGCAGCACAGAGACTTCTGACCCTCTTCTTACACCCCCCAAGAGAATCACAAGCTCAGCTGCCATTGAAACCATCGACCTACCTGTATCTTCATCTGTAGGAATGGAATGGACTTCAGAGATTGATTGTTCTTATTCTGACAGAATGCGTCAAGACACTGATGGTGAAGTCGGTGATGAGCGTGAGGGGCTCACAGACCATGATAGACATGAAGACCGCATGACTGAAGTTGAATTGTGGCAACAACTTGAGCATGAGCTTTATGATAGAACAGAAGGTGAGGATGCAGATGTGGCAAATGAAATAAGGAATGCAGAAAATGAAATAAGGGAAGAAGAAGAAGCTGCAATTGCGGAGGCAAGTGATGGTCAGCCCGAGAGCTCTGCTCCTGACATGAAGGAAGCGCATAGATTTTTTCCTGCAGGGAAAATTATGCATATTGTTACCGTTTACCATGGTGGTGCTGATAGTGAATCGAGCCACTCGGGCAATGAGCAGCCAGAAGAGACTAGGGTTGGTATTTTCCTCACTCCAAGATCCCTGTACAGTAAGCTGAGGTTGTCACAAACCATGATTAGTGATCACTTCATGCCGGTATATAGAAGACAGATTGAAAAGTTAATTAAAGAACTCGAGGACGAAATGGCTTCCATCGGAGAAGTGGTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

249

Amino Acids

27.62

Weight (kDa)

4.46

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14075 AT3G14075 AT3G14075
fragaria_vesca	FvH4_6g35030
malus_domestica	MD09G1180000.v1.1 MD17G1165600.v1.1
prunus_persica	Prupe.3G038800_v2.0.a1 Prupe.3G038800_v2.0.a1
pyrus_communis	pycom09g09770 pycom17g15830
rosa_chinensis	RchiOBHm_Chr2g0146191
rosa_laevigata	RLG00000020185
rosa_multiflora	Rmu_sc0010454.1_g000013
rosa_roxburghii	Rroxscaffold_152G00434890 Rroxscaffold_2G00100260
rosa_rugosa	Rorug02G0393700 Rorug02G0393700
rosa_samantha	Rh2AG449400 Rh2BG461900 Rh2CG436300 Rh2DG471100
rosa_wichuraiana	Rw2G036690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	292, 428
AclWI	GGATC	3 cut(s)	60, 73, 606
AcuI	CTGAAG	2 cut(s)	174, 321
AfaI	GTAC	1 cut(s)	620
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	36, 143, 308, 689
AluBI	AGCT	6 cut(s)	129, 134, 334, 419, 456, 628
AluI	AGCT	6 cut(s)	129, 134, 334, 419, 456, 628
Alw21I	GWGCWC	1 cut(s)	458
Alw26I	GTCTC	2 cut(s)	80, 575
AlwI	GGATC	3 cut(s)	60, 73, 606
Ama87I	CYCGRG	3 cut(s)	449, 559, 707
ApeKI	GCWGC	4 cut(s)	78, 134, 419, 571
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	4 cut(s)	5, 251, 260, 365
AvaI	CYCGRG	3 cut(s)	449, 559, 707
BamHI	GGATCC	1 cut(s)	65
BanII	GRGCYC	2 cut(s)	267, 458
BbsI	GAAGAC	2 cut(s)	294, 685
Bbv12I	GWGCWC	1 cut(s)	458
BbvCI	CCTCAGC	1 cut(s)	629
BbvI	GCAGC	4 cut(s)	90, 121, 406, 583
BccI	CCATC	4 cut(s)	155, 230, 434, 734
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	2 cut(s)	80, 575
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	2 cut(s)	171, 495
BglI	GCCNNNNNGGC	1 cut(s)	561
BisI	GCNGC	4 cut(s)	79, 135, 420, 572
BlpI	GCTNAGC	1 cut(s)	130
BlsI	GCNGC	4 cut(s)	80, 136, 421, 573
BmeT110I	CYCGRG	3 cut(s)	449, 559, 707
BmiI	GGNNCC	2 cut(s)	6, 67
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	2 cut(s)	294, 685
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
Bpu10I	CCTNAGC	1 cut(s)	629
Bpu1102I	GCTNAGC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	21, 529
BsaXI	ACNNNNNCTCC	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	667
Bse3DI	GCAATG	1 cut(s)	571
BseDI	CCNNGG	2 cut(s)	21, 529
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	144, 620
BseXI	GCAGC	4 cut(s)	90, 121, 406, 583
BsiHKAI	GWGCWC	1 cut(s)	458
BsiHKCI	CYCGRG	3 cut(s)	449, 559, 707
BsiSI	CCGG	2 cut(s)	63, 668
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	2 cut(s)	80, 575
BsmI	GAATGC	2 cut(s)	225, 391
BsoBI	CYCGRG	3 cut(s)	449, 559, 707
Bsp1286I	GDGCHC	2 cut(s)	267, 458
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	3 cut(s)	65, 611, 655
Bsp1720I	GCTNAGC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	2 cut(s)	292, 428
BspCNI	CTCAG	2 cut(s)	143, 621
BspLI	GGNNCC	2 cut(s)	6, 67
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	3 cut(s)	60, 73, 606
BsrDI	GCAATG	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	667
BsrGI	TGTACA	1 cut(s)	618
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	21, 529
BssMI	GATC	3 cut(s)	65, 611, 655
BssT1I	CCWWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	523, 623
Bst6I	CTCTTC	2 cut(s)	105, 573
BstAUI	TGTACA	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	130, 629
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	3 cut(s)	68, 614, 658
BstMAI	GTCTC	2 cut(s)	80, 575
BstMBI	GATC	3 cut(s)	65, 611, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 262, 368, 425, 561
BstSFI	CTRYAG	2 cut(s)	171, 495
BstV1I	GCAGC	4 cut(s)	90, 121, 406, 583
BstV2I	GAAGAC	2 cut(s)	294, 685
BstX2I	RGATCY	2 cut(s)	65, 611
BstYI	RGATCY	2 cut(s)	65, 611
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	667
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	619
CviAII	CATG	8 cut(s)	275, 284, 295, 329, 469, 530, 646, 664
CviQI	GTAC	1 cut(s)	619
DdeI	CTNAG	2 cut(s)	130, 629
DpnI	GATC	3 cut(s)	67, 613, 657
DpnII	GATC	3 cut(s)	65, 611, 655
Eam1104I	CTCTTC	2 cut(s)	105, 573
EarI	CTCTTC	2 cut(s)	105, 573
Ecl136II	GAGCTC	1 cut(s)	456
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	2 cut(s)	267, 458
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	174, 321
Eco88I	CYCGRG	3 cut(s)	449, 559, 707
EcoICRI	GAGCTC	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	267, 458
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	8 cut(s)	278, 287, 298, 332, 472, 533, 649, 667
FatI	CATG	8 cut(s)	274, 283, 294, 328, 468, 529, 645, 663
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	4 cut(s)	79, 135, 420, 572
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	2 cut(s)	267, 458
Fsp4HI	GCNGC	4 cut(s)	79, 135, 420, 572
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	4 cut(s)	79, 135, 420, 572
HapII	CCGG	2 cut(s)	63, 668
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	8 cut(s)	278, 287, 298, 332, 472, 533, 649, 667
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HinfI	GANTC	2 cut(s)	120, 548
HpaII	CCGG	2 cut(s)	63, 668
HphI	GGTGA	4 cut(s)	5, 251, 260, 365
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	4 cut(s)	94, 193, 214, 731
Hpy188III	TCNNGA	2 cut(s)	227, 464
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	3 cut(s)	44, 344, 466
HpyCH4III	ACNGT	2 cut(s)	523, 623
HpyCH4V	TGCA	5 cut(s)	362, 389, 422, 497, 511
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 262, 368, 425, 561
HpyF3I	CTNAG	2 cut(s)	130, 629
Hsp92II	CATG	8 cut(s)	278, 287, 298, 332, 472, 533, 649, 667
HspAI	GCGC	1 cut(s)	479
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	3 cut(s)	65, 611, 655
LmnI	GCTCC	2 cut(s)	10, 466
LpnPI	CCDG	9 cut(s)	57, 76, 171, 477, 483, 507, 588, 629, 681
Lsp1109I	GCAGC	4 cut(s)	90, 121, 406, 583
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	3 cut(s)	11, 517, 636
MalI	GATC	3 cut(s)	67, 613, 657
MboI	GATC	3 cut(s)	65, 611, 655
MboII	GAAGA	8 cut(s)	92, 156, 299, 419, 422, 425, 590, 690
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	2 cut(s)	65, 611
MhlI	GDGCHC	2 cut(s)	267, 458
MluCI	AATT	4 cut(s)	308, 423, 504, 696
Mph1103I	ATGCAT	1 cut(s)	513
MseI	TTAA	2 cut(s)	695, 699
MslI	CAYNNNNRTG	1 cut(s)	534
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	2 cut(s)	63, 668
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	2 cut(s)	225, 391
MwoI	GCNNNNNNNGC	5 cut(s)	26, 262, 368, 425, 561
NcoI	CCATGG	1 cut(s)	529
NdeII	GATC	3 cut(s)	65, 611, 655
NlaIII	CATG	8 cut(s)	278, 287, 298, 332, 472, 533, 649, 667
NlaIV	GGNNCC	2 cut(s)	6, 67
NmuCI	GTSAC	2 cut(s)	11, 636
NsiI	ATGCAT	1 cut(s)	513
PacI	TTAATTAA	1 cut(s)	699
PaeR7I	CTCGAG	1 cut(s)	707
PctI	GAATGC	2 cut(s)	225, 391
PfeI	GAWTC	2 cut(s)	120, 548
PkrI	GCNGC	4 cut(s)	80, 136, 421, 573
Psp124BI	GAGCTC	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	6, 67
PspXI	VCTCGAGB	1 cut(s)	707
PstI	CTGCAG	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	65, 611
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	620
RsaNI	GTAC	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	695, 699
SatI	GCNGC	4 cut(s)	79, 135, 420, 572
Sau3AI	GATC	3 cut(s)	65, 611, 655
SbfI	CCTGCAGG	1 cut(s)	499
SdaI	CCTGCAGG	1 cut(s)	499
SduI	GDGCHC	2 cut(s)	267, 458
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	2 cut(s)	171, 495
Sfr274I	CTCGAG	1 cut(s)	707
SlaI	CTCGAG	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	2 cut(s)	323, 707
SmoI	CTYRAG	2 cut(s)	323, 707
Sse8387I	CCTGCAGG	1 cut(s)	499
Sse9I	AATT	4 cut(s)	308, 423, 504, 696
SsiI	CCGC	2 cut(s)	292, 428
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	458
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	2 cut(s)	523, 623
TaqI	TCGA	3 cut(s)	150, 551, 708
TasI	AATT	4 cut(s)	308, 423, 504, 696
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	2 cut(s)	120, 548
Tru1I	TTAA	2 cut(s)	695, 699
Tru9I	TTAA	2 cut(s)	695, 699
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	11, 636
TseI	GCWGC	4 cut(s)	78, 134, 419, 571
Tsp45I	GTSAC	2 cut(s)	11, 636
TspDTI	ATGAA	7 cut(s)	63, 156, 300, 390, 411, 485, 652
TspRI	CASTG	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XhoI	CTCGAG	1 cut(s)	707
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.