Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010130

Physical Location & Seq

Genomic Coordinates Forward (+)

18977011 .. 18981103

Gene Structure 4093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGGGGTTAGAAGTAGATTTGAAGCCCATATTCGGGCAGCCCAGGGTGGAGGGGCCGGCTAATGCTTTGACTCCGCCGCGGCAGTTCCTGTTCCACGTCCATGGCTCCACCGCTGGTCCTGCGCACCTCAGAATCCATGTCACCGATTTCCACTCCAATCACTGGGAGGCCGTGCGCTCCGTCTCCCAGCTCGACGATCTGAGGGACAGCATTGGCATAGGGGGGTCTTGGTCAGAGTTCATAGAATATCTTGTTGCTTCCCTAAAGTCTCAAGACGTAAAGCTTGCTTTCGATGATGGTTGTGCACATGCAAAATTAGTTGCTCAAAAATCAAAAGGAATGCCTCGAATTTCCATTTCTCTCACAAAACTTGTGGGTACTGCTGCTAGTGAGGCTATTGCAAATCTATCTCTTCAGCTTTTCGGAGAATTTAAAAACCTCCATGAGTCTTACGTGGAAGAACAACAGCGCTCTGTTGAATTGTCAAAAGTGATATCAGCGGAAAAGGAAAAAAATGCTAGTATTCAGAGTCAACTGGAACAGTATACAAGAAGGCAAAAGTTACAAAGGATTAATTCCTCAGATAGAGCAGATGCTTCTGGACTATTCAGCAATGGTGTAAATAATTCTCCAGAGAAACGAGCAGCTCGTGATGCCAACTCAGCAACTGCCAATCGGGTTGTGCCTGCATATCGTAGGGCAAAAGTAAGAGGTGCTGTTCTGCAGGATACAGAAGATGGAGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.49

Weight (kDa)

7.89

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64010
fragaria_vesca	FvH4_4g13030 FvH4_4g13030 FvH4_4g13030
malus_domestica	MD17G1201700.v1.1
prunus_persica	Prupe.4G273000_v2.0.a1 Prupe.4G273000_v2.0.a1
pyrus_communis	pycom17g20560
rosa_chinensis	RchiOBHm_Chr4g0412711 RchiOBHm_Chr4g0412751
rosa_laevigata	RLG00000008261 RLG00000008263
rosa_multiflora	Rmu_sc0001238.1_g000037
rosa_roxburghii	Rroxscaffold_5G00356970
rosa_rugosa	Rorug04G0116000 Rorug04G0116400
rosa_samantha	Rh4AG175000 Rh4BG174900 Rh4CG186300 Rh4DG172000
rosa_wichuraiana	Rw0G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	548
AccII	CGCG	1 cut(s)	82
AciI	CCGC	5 cut(s)	77, 80, 82, 114, 503
AcsI	RAATTY	2 cut(s)	351, 431
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	382
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	35, 36, 165
AgsI	TTSAA	2 cut(s)	25, 482
AjiI	CACGTC	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	4 cut(s)	193, 286, 421, 650
AluI	AGCT	4 cut(s)	193, 286, 421, 650
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	3 cut(s)	190, 276, 738
Alw44I	GTGCAC	1 cut(s)	306
AlwNI	CAGNNNCTG	2 cut(s)	91, 671
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	2 cut(s)	56, 171
ApaLI	GTGCAC	1 cut(s)	306
ApeKI	GCWGC	3 cut(s)	40, 386, 647
ApoI	RAATTY	2 cut(s)	351, 431
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	3 cut(s)	127, 180, 474
AspS9I	GGNCC	2 cut(s)	56, 119
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	3 cut(s)	52, 373, 659
BccI	CCATC	2 cut(s)	293, 734
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	724
BcoDI	GTCTC	3 cut(s)	190, 276, 738
BfaI	CTAG	2 cut(s)	390, 522
BfmI	CTRYAG	1 cut(s)	725
BfoI	RGCGCY	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	5 cut(s)	41, 80, 83, 387, 648
BlsI	GCNGC	5 cut(s)	42, 81, 84, 388, 649
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	56, 119
BmiI	GGNNCC	2 cut(s)	57, 109
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	586, 646
BmuI	ACTGGG	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	457
BsaJI	CCNNGG	4 cut(s)	44, 45, 80, 103
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 36, 165
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	170, 543
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	4 cut(s)	44, 45, 80, 103
BseLI	CCNNNNNNNGG	3 cut(s)	35, 36, 165
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	4 cut(s)	145, 194, 597, 678
BseNI	ACTGG	2 cut(s)	170, 543
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	52, 373, 659
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	58, 173
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	35, 36, 165
BsmAI	GTCTC	3 cut(s)	190, 276, 738
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	58, 173
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	5 cut(s)	77, 80, 82, 114, 503
BspANI	GGCC	2 cut(s)	58, 173
BspCNI	CTCAG	4 cut(s)	144, 195, 596, 677
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	57, 109
BspMAI	CTGCAG	1 cut(s)	729
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	170, 543
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	44, 45, 80, 103
BssMI	GATC	1 cut(s)	199
BssNAI	GTATAC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	103
Bst1107I	GTATAC	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	546
Bst6I	CTCTTC	1 cut(s)	420
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	3 cut(s)	60, 288, 690
BstDEI	CTNAG	4 cut(s)	131, 203, 583, 664
BstDSI	CCRYGG	2 cut(s)	80, 103
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	3 cut(s)	127, 180, 474
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	3 cut(s)	190, 276, 738
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 395, 656, 665
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	725
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	3 cut(s)	52, 373, 659
BstXI	CCANNNNNNTGG	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	2 cut(s)	58, 173
BtgI	CCRYGG	2 cut(s)	80, 103
BtrI	CACGTC	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	60, 288, 690
CaiI	CAGNNNCTG	2 cut(s)	91, 671
CfoI	GCGC	3 cut(s)	127, 180, 474
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	56, 119
Cfr42I	CCGCGG	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	381
CspCI	CAANNNNNGTGG	2 cut(s)	357, 392
CviAII	CATG	4 cut(s)	104, 140, 311, 446
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	4 cut(s)	131, 203, 583, 664
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraI	TTTAAA	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	4 cut(s)	107, 143, 314, 449
FaiI	YATR	9 cut(s)	32, 105, 141, 221, 245, 312, 447, 549, 694
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	4 cut(s)	103, 139, 310, 445
FblI	GTMKAC	1 cut(s)	548
Fnu4HI	GCNGC	5 cut(s)	41, 80, 83, 387, 648
Fsp4HI	GCNGC	5 cut(s)	41, 80, 83, 387, 648
FspBI	CTAG	2 cut(s)	390, 522
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	3 cut(s)	126, 179, 473
GluI	GCNGC	5 cut(s)	41, 80, 83, 387, 648
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	2 cut(s)	58, 173
HapII	CCGG	1 cut(s)	59
HhaI	GCGC	3 cut(s)	127, 180, 474
Hin1II	CATG	4 cut(s)	107, 143, 314, 449
Hin6I	GCGC	3 cut(s)	125, 178, 472
HinP1I	GCGC	3 cut(s)	125, 178, 472
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	73, 135, 449, 532
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	308, 536, 549
Hpy188I	TCNGA	6 cut(s)	134, 204, 238, 428, 531, 586
Hpy188III	TCNNGA	4 cut(s)	275, 603, 635, 653
Hpy8I	GTNNAC	3 cut(s)	308, 536, 549
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	549
HpyCH4III	ACNGT	1 cut(s)	546
HpyCH4IV	ACGT	3 cut(s)	99, 279, 456
HpyCH4V	TGCA	5 cut(s)	308, 314, 404, 692, 727
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 395, 656, 665
HpyF3I	CTNAG	4 cut(s)	131, 203, 583, 664
HpySE526I	ACGT	3 cut(s)	99, 279, 456
Hsp92II	CATG	4 cut(s)	107, 143, 314, 449
HspAI	GCGC	3 cut(s)	125, 178, 472
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
KspI	CCGCGG	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	113, 185
Lsp1109I	GCAGC	3 cut(s)	52, 373, 659
LweI	GCATC	2 cut(s)	586, 646
MaeI	CTAG	2 cut(s)	390, 522
MaeII	ACGT	3 cut(s)	99, 279, 456
MaeIII	GTNAC	2 cut(s)	142, 564
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	3 cut(s)	407, 473, 749
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	6 cut(s)	317, 351, 431, 482, 577, 628
MlyI	GAGTC	3 cut(s)	67, 458, 541
MnlI	CCTC	9 cut(s)	46, 140, 163, 198, 357, 388, 452, 592, 707
MroNI	GCCGGC	1 cut(s)	58
MseI	TTAA	2 cut(s)	435, 576
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	3 cut(s)	82, 116, 503
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	46
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	4 cut(s)	122, 395, 656, 665
NaeI	GCCGGC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	1 cut(s)	199
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	4 cut(s)	107, 143, 314, 449
NlaIV	GGNNCC	2 cut(s)	57, 109
NmuCI	GTSAC	1 cut(s)	142
NsbI	TGCGCA	1 cut(s)	126
NspI	RCATGY	1 cut(s)	314
PasI	CCCWGGG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	649
PctI	GAATGC	1 cut(s)	348
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	165
PkrI	GCNGC	5 cut(s)	42, 81, 84, 388, 649
PleI	GAGTC	3 cut(s)	67, 457, 540
PpsI	GAGTC	3 cut(s)	67, 457, 540
Ppu21I	YACGTR	1 cut(s)	457
PshBI	ATTAAT	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	57, 109
PspPI	GGNCC	2 cut(s)	56, 119
PstI	CTGCAG	1 cut(s)	729
PstNI	CAGNNNCTG	2 cut(s)	91, 671
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	435, 576
SatI	GCNGC	5 cut(s)	41, 80, 83, 387, 648
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	56, 119
SchI	GAGTC	3 cut(s)	67, 458, 541
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	586, 646
SfcI	CTRYAG	1 cut(s)	725
Sfr303I	CCGCGG	1 cut(s)	83
SgrBI	CCGCGG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	6 cut(s)	317, 351, 431, 482, 577, 628
SsiI	CCGC	5 cut(s)	77, 80, 82, 114, 503
SspMI	CTAG	2 cut(s)	390, 522
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	546
TaiI	ACGT	3 cut(s)	102, 282, 459
TaqI	TCGA	3 cut(s)	195, 294, 349
TasI	AATT	6 cut(s)	317, 351, 431, 482, 577, 628
TauI	GCSGC	2 cut(s)	82, 85
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	435, 576
Tru9I	TTAA	2 cut(s)	435, 576
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	3 cut(s)	40, 386, 647
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	165
VneI	GTGCAC	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	576
XapI	RAATTY	2 cut(s)	351, 431
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	548
XspI	CTAG	2 cut(s)	390, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.