Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009854

Physical Location & Seq

Genomic Coordinates Reverse (-)

19033298 .. 19033720

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGTCTTTTGCAAGTTTTGCAGAATGTGATGCAAGGTTTTGTCCACGTGAACGTATACTTCTGTTTGGTTTGATGTGGTTATGTGTGATAGTTTTGTATCTCTTTGGTTGCGTTTGTAATCCTAGAGTTTTATTCCAGAGCGACGATGTTTTTGACAATTTCTCGCAGGTGATGGCACCGTTTTTAACAGTACACAGGACGGCAGATGGGGTGACGTACCTGACGTCGTCGCAGCTGCTGTACGAGAAGGGATCAAGCGTGGACAAGACTTTGAAGATTTACGATGGAATGTACCATTCTTTGGTACAAGGGGAGCCGAACGAGAATGCGGAGATTGTGTTGAGGGATATGAGGGAGTGGATTGACGAGAGGGTGGCGAGGTATGGGAGCAAAGCAAAGGGCTTGGAGGAGGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0003846 GO:0004620 GO:0004622 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0005911 GO:0006629 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008374 GO:0009506 GO:0009636 GO:0010035 GO:0010038 GO:0010043 GO:0012505 GO:0016020 GO:0016298 GO:0016411 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0030054 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0050896 GO:0052689 GO:0055044 GO:0071704 GO:0071944 GO:0090430 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

141

Amino Acids

16.02

Weight (kDa)

4.99

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	49 - 106	2e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0009854)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52760
fragaria_vesca	FvH4_6g30610 FvH4_6g30610 FvH4_6g30610 FvH4_6g30610
malus_domestica	MD17G1201900.v1.1
prunus_persica	Prupe.5G109300_v2.0.a1
pyrus_communis	pycom17g20580 pycom17g20590 pycom17g20600 pycom17g20610
rosa_chinensis	RchiOBHm_Chr2g0137021
rosa_laevigata	RLG00000019597
rosa_multiflora	Rmu_sc0001374.1_g000047
rosa_roxburghii	Rroxscaffold_2G00107770
rosa_rugosa	Rorug02G0337200
rosa_samantha	Rh2AG386300 Rh2BG393100 Rh2CG373600 Rh2DG409300
rosa_wichuraiana	Rw2G031600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
AatII	GACGTC	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	262
AcvI	CACGTG	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	227
AfaI	GTAC	5 cut(s)	195, 221, 245, 296, 309
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
AlwI	GGATC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	235, 238
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AsuHPI	GGTGA	2 cut(s)	184, 226
BanI	GGYRCC	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	225, 247
BccI	CCATC	3 cut(s)	169, 203, 281
BceAI	ACGGC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	160
BisI	GCNGC	2 cut(s)	236, 239
BlsI	GCNGC	2 cut(s)	237, 240
BmiI	GGNNCC	2 cut(s)	180, 318
BmsI	GCATC	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	225, 247
BshNI	GGYRCC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	254
BspACI	CCGC	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	180, 318
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	178
BssMI	GATC	1 cut(s)	254
BssNAI	GTATAC	1 cut(s)	59
BssNI	GRCGYC	1 cut(s)	227
Bst1107I	GTATAC	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	183, 193
BstACI	GRCGYC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBAI	YACGTR	1 cut(s)	50
BstKTI	GATC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	225, 247
BstZ17I	GTATAC	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	160
CaiI	CAGNNNCTG	1 cut(s)	241
Csp6I	GTAC	5 cut(s)	194, 220, 244, 295, 308
CviJI	RGCY	3 cut(s)	238, 319, 405
CviKI_1	RGCY	3 cut(s)	238, 319, 405
CviQI	GTAC	5 cut(s)	194, 220, 244, 295, 308
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eco72I	CACGTG	1 cut(s)	50
FaiI	YATR	4 cut(s)	59, 85, 353, 387
FblI	GTMKAC	1 cut(s)	58
Fnu4HI	GCNGC	2 cut(s)	236, 239
Fsp4HI	GCNGC	2 cut(s)	236, 239
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	2 cut(s)	236, 239
Hin1I	GRCGYC	1 cut(s)	227
HphI	GGTGA	2 cut(s)	184, 226
Hpy166II	GTNNAC	5 cut(s)	47, 53, 59, 196, 265
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	5 cut(s)	47, 53, 59, 196, 265
Hpy99I	CGWCG	3 cut(s)	149, 232, 235
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	183, 193
HpyCH4IV	ACGT	4 cut(s)	49, 55, 218, 227
HpyCH4V	TGCA	3 cut(s)	14, 23, 35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpySE526I	ACGT	4 cut(s)	49, 55, 218, 227
Hsp92I	GRCGYC	1 cut(s)	227
Kzo9I	GATC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	316, 390
LpnPI	CCDG	4 cut(s)	152, 155, 184, 236
Lsp1109I	GCAGC	2 cut(s)	225, 247
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	4 cut(s)	49, 55, 218, 227
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	1 cut(s)	289
MluCI	AATT	2 cut(s)	160, 417
MnlI	CCTC	6 cut(s)	339, 348, 366, 375, 403, 406
MseI	TTAA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeII	GATC	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	180, 318
NmuCI	GTSAC	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PctI	GAATGC	1 cut(s)	334
PflFI	GACNNNGTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	237, 240
PmaCI	CACGTG	1 cut(s)	50
PmlI	CACGTG	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	50
PspCI	CACGTG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	180, 318
PstNI	CAGNNNCTG	1 cut(s)	241
PsyI	GACNNNGTC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	238
RsaI	GTAC	5 cut(s)	195, 221, 245, 296, 309
RsaNI	GTAC	5 cut(s)	194, 220, 244, 295, 308
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	2 cut(s)	236, 239
Sau3AI	GATC	1 cut(s)	254
SetI	ASST	9 cut(s)	41, 52, 58, 174, 221, 225, 230, 240, 386
SfaNI	GCATC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	160, 417
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	183, 193
TaiI	ACGT	4 cut(s)	52, 58, 221, 230
TasI	AATT	2 cut(s)	160, 417
TatI	WGTACW	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	2 cut(s)	235, 238
Tsp45I	GTSAC	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	58
XspI	CTAG	1 cut(s)	126
ZraI	GACGTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.