pycom17g21450

Embryo-specific protein 3, (ATS3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012884
Physical Location & Seq
Reverse (-)
19805736 .. 19806289
554 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGTCACTCTTGCAGAACGCAGGGAGCTGCTCTTACACTGTATCAATACAGACCAGCTGTTCTTCGCCCCGCTATACACGGGATCAGATCAGTATTGCCTTTGGTGATGCTTATGGCAATCAGGTGTATGCTCCTAGAATCGACGATCCGTATTCGAGGACATTCGAGAGCTGCTCCACGGATACGTTTAAGATTTCGGGGCCGTGTACGTACCAGATCTGTTATGTGTATCTGTACCGGAGCGGATACGATGGGTGGAAAACAGAGGCAGTGACAATTTATGGCCATTACACCAAGGCTGTTACGTTTTACTACAACTCTTTTATTCCAAATGGTGTTTGGTATGGATTTAATCAGTGTAACGGTGCTGCAGCATCCTCCACTTCGAGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATS3

Protein Analysis

132

Amino Acids

14.62

Weight (kDa)

6.51

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATS3 PF06232 5 - 120 4.7e-53 Embryo-specific protein 3, (ATS3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012884)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41475
fragaria_vesca FvH4_6g29960 FvH4_6g29960
malus_domestica MD00G1023000.v1.1 MD02G1031500.v1.1
prunus_persica Prupe.3G084200_v2.0.a1 Prupe.7G243200_v2.0.a1
pyrus_communis pycom02g02630 pycom17g21450
rosa_chinensis RchiOBHm_Chr2g0135961
rosa_laevigata RLG00000019492
rosa_multiflora Rmu_ssc0000343.1_g000020
rosa_roxburghii Rroxscaffold_2G00108740
rosa_samantha Rh2AG378900 Rh2BG385400 Rh2CG364500 Rh2DG401700
rosa_wichuraiana Rw2G030870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 2 cut(s) 70, 243
AclWI GGATC 2 cut(s) 90, 140
AcoI YGGCCR 1 cut(s) 283
AfaI GTAC 3 cut(s) 208, 212, 236
AluBI AGCT 3 cut(s) 27, 57, 171
AluI AGCT 3 cut(s) 27, 57, 171
AlwI GGATC 2 cut(s) 90, 140
AoxI GGCC 2 cut(s) 200, 283
ApeKI GCWGC 4 cut(s) 27, 171, 368, 371
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 116
BalI TGGCCA 1 cut(s) 285
BbvI GCAGC 4 cut(s) 14, 158, 355, 383
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 187
BciVI GTATCC 2 cut(s) 175, 239
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 369
BfuI GTATCC 2 cut(s) 175, 239
BglII AGATCT 1 cut(s) 216
BisI GCNGC 4 cut(s) 28, 172, 369, 372
BlsI GCNGC 4 cut(s) 29, 173, 370, 373
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 201
BmsI GCATC 2 cut(s) 97, 383
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BsaAI YACGTR 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 177, 294
BsaWI WCCGGW 1 cut(s) 237
BseDI CCNNGG 2 cut(s) 177, 294
BseGI GGATG 1 cut(s) 374
BseXI GCAGC 4 cut(s) 14, 158, 355, 383
BshFI GGCC 2 cut(s) 202, 285
BsiSI CCGG 1 cut(s) 238
BsnI GGCC 2 cut(s) 202, 285
Bsp143I GATC 4 cut(s) 82, 87, 145, 216
BspACI CCGC 2 cut(s) 70, 243
BspANI GGCC 2 cut(s) 202, 285
BspLI GGNNCC 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 2 cut(s) 90, 140
BsrBI CCGCTC 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 177, 294
BssMI GATC 4 cut(s) 82, 87, 145, 216
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 40, 365
BstBAI YACGTR 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 374
BstKTI GATC 4 cut(s) 85, 90, 148, 219
BstMBI GATC 4 cut(s) 82, 87, 145, 216
BstNSI RCATGY 1 cut(s) 394
BstSFI CTRYAG 1 cut(s) 369
BstSNI TACGTA 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 14, 158, 355, 383
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuI GTATCC 2 cut(s) 175, 239
BsuRI GGCC 2 cut(s) 202, 285
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 374
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 36, 276, 362
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 3 cut(s) 207, 211, 235
CviAII CATG 1 cut(s) 391
CviJI RGCY 6 cut(s) 27, 57, 171, 202, 285, 299
CviKI_1 RGCY 6 cut(s) 27, 57, 171, 202, 285, 299
CviQI GTAC 3 cut(s) 207, 211, 235
DpnI GATC 4 cut(s) 84, 89, 147, 218
DpnII GATC 4 cut(s) 82, 87, 145, 216
EaeI YGGCCR 1 cut(s) 283
Eco105I TACGTA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 394
FaiI YATR 7 cut(s) 75, 114, 129, 225, 282, 345, 392
FatI CATG 1 cut(s) 390
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 4 cut(s) 28, 172, 369, 372
FokI GGATG 1 cut(s) 361
Fsp4HI GCNGC 4 cut(s) 28, 172, 369, 372
FspBI CTAG 1 cut(s) 135
GluI GCNGC 4 cut(s) 28, 172, 369, 372
HaeIII GGCC 2 cut(s) 202, 285
HapII CCGG 1 cut(s) 238
Hin1II CATG 1 cut(s) 394
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 238
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 166
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 40, 365
HpyCH4IV ACGT 3 cut(s) 185, 209, 305
HpyCH4V TGCA 2 cut(s) 13, 371
HpySE526I ACGT 3 cut(s) 185, 209, 305
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 4 cut(s) 82, 87, 145, 216
LmnI GCTCC 4 cut(s) 24, 136, 179, 240
LpnPI CCDG 5 cut(s) 6, 67, 107, 227, 251
Lsp1109I GCAGC 4 cut(s) 14, 158, 355, 383
LweI GCATC 2 cut(s) 97, 383
MaeI CTAG 1 cut(s) 135
MaeII ACGT 3 cut(s) 185, 209, 305
MaeIII GTNAC 4 cut(s) 3, 271, 301, 359
MalI GATC 4 cut(s) 84, 89, 147, 218
MbiI CCGCTC 1 cut(s) 243
MboI GATC 4 cut(s) 82, 87, 145, 216
MboII GAAGA 1 cut(s) 54
MflI RGATCY 1 cut(s) 216
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 1 cut(s) 276
MluNI TGGCCA 1 cut(s) 285
MnlI CCTC 3 cut(s) 150, 259, 388
Mox20I TGGCCA 1 cut(s) 285
MscI TGGCCA 1 cut(s) 285
MseI TTAA 2 cut(s) 189, 351
Msp20I TGGCCA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 1 cut(s) 238
NdeII GATC 4 cut(s) 82, 87, 145, 216
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 1 cut(s) 201
NmuCI GTSAC 2 cut(s) 3, 271
NspI RCATGY 1 cut(s) 394
PfeI GAWTC 1 cut(s) 138
PkrI GCNGC 4 cut(s) 29, 173, 370, 373
Ppu21I YACGTR 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 201
PspPI GGNCC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 57
RsaI GTAC 3 cut(s) 208, 212, 236
RsaNI GTAC 3 cut(s) 207, 211, 235
SaqAI TTAA 2 cut(s) 189, 351
SatI GCNGC 4 cut(s) 28, 172, 369, 372
Sau3AI GATC 4 cut(s) 82, 87, 145, 216
Sau96I GGNCC 1 cut(s) 200
SetI ASST 7 cut(s) 29, 59, 126, 173, 188, 212, 308
SfaNI GCATC 2 cut(s) 97, 383
SfcI CTRYAG 1 cut(s) 369
SnaBI TACGTA 1 cut(s) 210
Sse9I AATT 1 cut(s) 276
SsiI CCGC 2 cut(s) 70, 243
SspMI CTAG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 40, 365
TaiI ACGT 3 cut(s) 188, 212, 308
TaqI TCGA 4 cut(s) 141, 155, 165, 386
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 189, 351
Tru9I TTAA 2 cut(s) 189, 351
TscAI CASTG 3 cut(s) 43, 276, 362
TseFI GTSAC 2 cut(s) 3, 271
TseI GCWGC 4 cut(s) 27, 171, 368, 371
Tsp45I GTSAC 2 cut(s) 3, 271
TspGWI ACGGA 2 cut(s) 138, 194
TspRI CASTG 3 cut(s) 43, 276, 362
XceI RCATGY 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.