pycom17g21820

Seed dormancy control

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012547
Physical Location & Seq
Forward (+)
20257636 .. 20259966
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1017 bp
ATGACAAAATTATTTCTCCCTCCAGTGGTCACTGTAGGCTTACGGTTCAGTTTCCCGGATCAGGAAGAGAGAGAGTCCAAGAAATCGATCGACGCAGAGAAGTGCAATATACCAGAAAGGGAAGCGATGAAGGGGATGATGCCATCTCAATCCTCCATGAACTACGCTAATGAAGACGGCTACTACGAACTAGAAGAAGAAAATGAAGGATTGTTGAGGAGAGGCATAGTAGAAGGCTGCCGTGGAATTGATGGTATAGCAGACAAGTTTCAGTGCATGAGCATTCACAAACGAGGCGCTGCCAAACGAGGTGAAGAGCTCTCTTTTCAGAAGAAATGTCTGTGGAAGCAAGAGCAGAAGGGCAGAGTTGCAAGGCTAGAGAAACAGCTCAGGATAAGGTGGGAACTTGATGAGCTTATTGAAGAACAACTGAACAGGTTCCACGCCCACTACAACTTGGATATGGTCCCAACCCGGCTTAAGGATGTTGCTCAACTGCTCATGCCCAATTGGACTCCACCTGATGAGCTGATCTCCACAGCTTGGCTTGGCGATTGGCGTCCCTCTGCAATGCTGGAGCTTGTGCGTAGCTTGCCCATCTGTTCCTGCTCATCATCATCATCCTCTTCGAACTCTAGTGGCACTGAACAGCTCTTATTGCAGCTCATTTATGAGATTCGGATTGAAGAGGCAATAATTGATGAGGAAATGGCTGAAATTCAATCAACATGTATCTTCTACCTTCCATTTGCTCCAGCAAACATCCAATCAGGTGGAGCTGCCTTGGCTTCTGTTCAGTCAGAGTTCAAGAAGATCGAAAGGGTGATCACAAAAGCTCAACAACTTAGGTTCAAGGCACTGGAGTTGGTGTTGAAGAAGGTACTGAATGAAACTGATGCGGCAGAGTTCTTGGTTGCATTCGAGGGAATTCAAGAAGCAATTCACCAGTTTGCCACAAACCAGAGGTTCCAAAAGGGTCCAGTCACGGTGCCTGTCAAGTCCTTGGGGTCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DOG1

Protein Analysis

339

Amino Acids

38.34

Weight (kDa)

5.44

Isoelectric Point (pI)

64.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DOG1 PF14144 133 - 197 1e-12 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012547)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15320 AT1G15320
fragaria_vesca FvH4_6g29541
malus_domestica MD17G1213300.v1.1
prunus_persica Prupe.3G088600_v2.0.a1 Prupe.3G088600_v2.0.a1
pyrus_communis pycom17g21820
rosa_chinensis RchiOBHm_Chr2g0135091
rosa_laevigata RLG00000019441
rosa_multiflora Rmu_co8282347.1_g000001 Rmu_sc0001385.1_g000014 Rmu_sc0003543.1_g000003
rosa_roxburghii Rroxscaffold_2G00109490
rosa_rugosa Rorug02G0322700
rosa_samantha Rh2AG371900 Rh2BG379600 Rh2CG358700 Rh2DG396200
rosa_wichuraiana Rw0G013560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 988
AccB7I CCANNNNNTGG 1 cut(s) 543
AciI CCGC 1 cut(s) 899
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 2 cut(s) 717, 927
AcyI GRCGYC 1 cut(s) 559
AfaI GTAC 1 cut(s) 882
AfiI CCNNNNNNNGG 4 cut(s) 25, 61, 481, 543
AflII CTTAAG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 7 cut(s) 422, 686, 722, 808, 853, 874, 932
Alw21I GWGCWC 1 cut(s) 321
AlwI GGATC 1 cut(s) 66
ApeKI GCWGC 4 cut(s) 237, 299, 661, 779
ApoI RAATTY 2 cut(s) 717, 927
Asp700I GAANNNNTTC 2 cut(s) 437, 939
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 466, 977
AsuC2I CCSGG 2 cut(s) 56, 475
AsuHPI GGTGA 3 cut(s) 323, 835, 935
AsuII TTCGAA 1 cut(s) 629
AvaII GGWCC 2 cut(s) 466, 977
BanI GGYRCC 1 cut(s) 988
BanII GRGCYC 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 4 cut(s) 224, 286, 673, 766
BccI CCATC 3 cut(s) 151, 245, 605
BceAI ACGGC 2 cut(s) 193, 225
BclI TGATCA 1 cut(s) 825
BcnI CCSGG 2 cut(s) 56, 475
BfaI CTAG 4 cut(s) 191, 377, 636, 1011
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 479
BisI GCNGC 5 cut(s) 238, 300, 662, 780, 900
BlsI GCNGC 5 cut(s) 239, 301, 663, 781, 901
Bme1390I CCNGG 2 cut(s) 56, 475
Bme18I GGWCC 2 cut(s) 466, 977
BmgT120I GGNCC 2 cut(s) 466, 977
BmiI GGNNCC 5 cut(s) 440, 468, 968, 978, 990
BmrFI CCNGG 2 cut(s) 56, 475
BmsI GCATC 2 cut(s) 129, 886
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpmI CTGGAG 4 cut(s) 6, 596, 738, 881
Bpu10I CCTNAGC 1 cut(s) 389
Bpu14I TTCGAA 1 cut(s) 629
BpuMI CCSGG 2 cut(s) 56, 475
Bsa29I ATCGAT 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 559
BsaJI CCNNGG 3 cut(s) 241, 783, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 854, 884
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 61, 481, 543
Bse1I ACTGG 4 cut(s) 23, 864, 946, 980
Bse3DI GCAATG 1 cut(s) 576
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 241, 783, 1002
BseGI GGATG 4 cut(s) 141, 490, 620, 762
BseLI CCNNNNNNNGG 4 cut(s) 25, 61, 481, 543
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 1 cut(s) 403
BseNI ACTGG 4 cut(s) 23, 864, 946, 980
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 4 cut(s) 224, 286, 673, 766
Bsh1285I CGRYCG 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 988
BshVI ATCGAT 1 cut(s) 86
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 56, 475
BslFI GGGAC 2 cut(s) 452, 546
BslI CCNNNNNNNGG 4 cut(s) 25, 61, 481, 543
BsmFI GGGAC 2 cut(s) 452, 546
BsmI GAATGC 2 cut(s) 282, 917
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 5 cut(s) 58, 87, 531, 813, 825
BspACI CCGC 1 cut(s) 899
BspCNI CTCAG 1 cut(s) 402
BspDI ATCGAT 1 cut(s) 86
BspLI GGNNCC 5 cut(s) 440, 468, 968, 978, 990
BspPI GGATC 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 309
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 988
BspTI CTTAAG 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 4 cut(s) 23, 864, 946, 980
BssECI CCNNGG 3 cut(s) 241, 783, 1002
BssMI GATC 5 cut(s) 58, 87, 531, 813, 825
BssNI GRCGYC 1 cut(s) 559
BssT1I CCWWGG 2 cut(s) 783, 1002
Bst4CI ACNGT 3 cut(s) 34, 45, 988
Bst6I CTCTTC 4 cut(s) 60, 309, 631, 681
BstACI GRCGYC 1 cut(s) 559
BstAFI CTTAAG 1 cut(s) 479
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 593
BstDEI CTNAG 2 cut(s) 389, 845
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 4 cut(s) 141, 490, 620, 762
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 5 cut(s) 61, 90, 534, 816, 828
BstMBI GATC 5 cut(s) 58, 87, 531, 813, 825
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 592, 658, 785
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 2 cut(s) 54, 473
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 4 cut(s) 224, 286, 673, 766
BstV2I GAAGAC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 773
Bsu15I ATCGAT 1 cut(s) 86
BsuTUI ATCGAT 1 cut(s) 86
BtgI CCRYGG 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 140
BtsCI GGATG 4 cut(s) 141, 490, 620, 762
BtsIMutI CAGTG 5 cut(s) 30, 30, 278, 642, 857
Cac8I GCNNGC 1 cut(s) 593
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 466, 977
ClaI ATCGAT 1 cut(s) 86
CseI GACGC 2 cut(s) 101, 548
Csp6I GTAC 1 cut(s) 881
CviAII CATG 4 cut(s) 157, 277, 502, 729
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 2 cut(s) 389, 845
DpnI GATC 5 cut(s) 60, 89, 533, 815, 827
DpnII GATC 5 cut(s) 58, 87, 531, 813, 825
Eam1104I CTCTTC 4 cut(s) 60, 309, 631, 681
EarI CTCTTC 4 cut(s) 60, 309, 631, 681
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 2 cut(s) 783, 1002
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 466, 977
Eco53kI GAGCTC 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 927
EcoT14I CCWWGG 2 cut(s) 783, 1002
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 2 cut(s) 783, 1002
FaeI CATG 4 cut(s) 160, 280, 505, 732
FaiI YATR 9 cut(s) 110, 158, 227, 257, 278, 464, 503, 672, 730
FaqI GGGAC 2 cut(s) 452, 546
FatI CATG 4 cut(s) 156, 276, 501, 728
FbaI TGATCA 1 cut(s) 825
Fnu4HI GCNGC 5 cut(s) 238, 300, 662, 780, 900
FokI GGATG 4 cut(s) 148, 497, 607, 749
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 5 cut(s) 238, 300, 662, 780, 900
FspBI CTAG 4 cut(s) 191, 377, 636, 1011
GlaI GCGC 1 cut(s) 298
GluI GCNGC 5 cut(s) 238, 300, 662, 780, 900
GsuI CTGGAG 4 cut(s) 6, 596, 738, 881
HaeII RGCGCY 1 cut(s) 300
HapII CCGG 2 cut(s) 56, 475
HgaI GACGC 2 cut(s) 101, 548
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 559
Hin1II CATG 4 cut(s) 160, 280, 505, 732
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HinfI GANTC 3 cut(s) 74, 514, 676
HpaII CCGG 2 cut(s) 56, 475
HphI GGTGA 3 cut(s) 323, 835, 935
Hpy188I TCNGA 3 cut(s) 330, 681, 802
Hpy188III TCNNGA 4 cut(s) 62, 391, 808, 932
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 6 cut(s) 124, 200, 227, 352, 752, 871
HpyCH4III ACNGT 3 cut(s) 34, 45, 988
HpyCH4V TGCA 6 cut(s) 105, 276, 371, 569, 661, 917
HpyF10VI GCNNNNNNNGC 3 cut(s) 592, 658, 785
HpyF3I CTNAG 2 cut(s) 389, 845
Hsp92I GRCGYC 1 cut(s) 559
Hsp92II CATG 4 cut(s) 160, 280, 505, 732
HspAI GCGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 825
Kzo9I GATC 5 cut(s) 58, 87, 531, 813, 825
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 3 cut(s) 577, 757, 776
Lsp1109I GCAGC 4 cut(s) 224, 286, 673, 766
LweI GCATC 2 cut(s) 129, 886
MaeI CTAG 4 cut(s) 191, 377, 636, 1011
MaeIII GTNAC 2 cut(s) 28, 982
MalI GATC 5 cut(s) 60, 89, 533, 815, 827
MboI GATC 5 cut(s) 58, 87, 531, 813, 825
MfeI CAATTG 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 7 cut(s) 8, 246, 508, 696, 717, 927, 939
MlyI GAGTC 2 cut(s) 83, 508
MroXI GAANNNNTTC 2 cut(s) 437, 939
MseI TTAA 1 cut(s) 480
MspCI CTTAAG 1 cut(s) 479
MspI CCGG 2 cut(s) 56, 475
MspR9I CCNGG 2 cut(s) 56, 475
MunI CAATTG 1 cut(s) 508
Mva1269I GAATGC 2 cut(s) 282, 917
MwoI GCNNNNNNNGC 3 cut(s) 592, 658, 785
NciI CCSGG 2 cut(s) 56, 475
NdeII GATC 5 cut(s) 58, 87, 531, 813, 825
NlaIII CATG 4 cut(s) 160, 280, 505, 732
NlaIV GGNNCC 5 cut(s) 440, 468, 968, 978, 990
NmuCI GTSAC 2 cut(s) 28, 982
NspI RCATGY 1 cut(s) 732
NspV TTCGAA 1 cut(s) 629
PciI ACATGT 1 cut(s) 728
PciSI GCTCTTC 1 cut(s) 309
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 2 cut(s) 282, 917
PdmI GAANNNNTTC 2 cut(s) 437, 939
PfeI GAWTC 1 cut(s) 676
PflMI CCANNNNNTGG 1 cut(s) 543
PfoI TCCNGGA 1 cut(s) 54
PkrI GCNGC 5 cut(s) 239, 301, 663, 781, 901
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 2 cut(s) 82, 508
PpsI GAGTC 2 cut(s) 82, 508
PscI ACATGT 1 cut(s) 728
Psp124BI GAGCTC 1 cut(s) 321
PspN4I GGNNCC 5 cut(s) 440, 468, 968, 978, 990
PspPI GGNCC 2 cut(s) 466, 977
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
SacI GAGCTC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 5 cut(s) 238, 300, 662, 780, 900
Sau3AI GATC 5 cut(s) 58, 87, 531, 813, 825
Sau96I GGNCC 2 cut(s) 466, 977
SchI GAGTC 2 cut(s) 83, 508
ScrFI CCNGG 2 cut(s) 56, 475
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 2 cut(s) 129, 886
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 629
SinI GGWCC 2 cut(s) 466, 977
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 7 cut(s) 8, 246, 508, 696, 717, 927, 939
SsiI CCGC 1 cut(s) 899
SspMI CTAG 4 cut(s) 191, 377, 636, 1011
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 2 cut(s) 54, 473
StyI CCWWGG 2 cut(s) 783, 1002
TaaI ACNGT 3 cut(s) 34, 45, 988
TaqI TCGA 5 cut(s) 86, 90, 629, 816, 921
TasI AATT 7 cut(s) 8, 246, 508, 696, 717, 927, 939
TauI GCSGC 1 cut(s) 902
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 5 cut(s) 30, 37, 278, 649, 864
TseFI GTSAC 2 cut(s) 28, 982
TseI GCWGC 4 cut(s) 237, 299, 661, 779
Tsp45I GTSAC 2 cut(s) 28, 982
TspDTI ATGAA 5 cut(s) 143, 173, 186, 219, 903
TspRI CASTG 5 cut(s) 30, 37, 278, 649, 864
Van91I CCANNNNNTGG 1 cut(s) 543
Vha464I CTTAAG 1 cut(s) 479
VpaK11BI GGWCC 2 cut(s) 466, 977
XapI RAATTY 2 cut(s) 717, 927
XceI RCATGY 1 cut(s) 732
XmnI GAANNNNTTC 2 cut(s) 437, 939
XspI CTAG 4 cut(s) 191, 377, 636, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.