Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007227

Physical Location & Seq

Genomic Coordinates Reverse (-)

21211324 .. 21214360

Gene Structure 3037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGATGCGTCGTTGTGATCTTCCTGCTCGTGATCTACGCCTGATCGATCCTTTATTTGTTTACCCTTCCACCATCCTTGGAAGAGAGAAAGCTATTGTGGTTAATCTAGAGCAGATTCGATGTATTATTACGGCCGATGAGGTTCTGCTTTTGAATTCCCTTGATAGCTATGTATTGCAGTATGTGGTGGAGCTTCAGAGAAGATTGACAACAAATGGAGTGGGTGATGTTTGGCAGTCCGATGGTTCTGGCTTGAGTCGGCAGAGAGGAAATAGAAATTTTGATAGTGTGTTTGGGAGCACATCACCTGATTATTTGCCATTTGAGTTTAGGGCTTTAGAAGTTGCTCTGGAGGCTGCCTGTACATTTCTCGATTCTCAGGCAGCTGAACTAGAAATTGAAGCATATCCATTACTGGATGAGCTCACGTCAAAAATCAGTACACTAAACTTGGAACGTGCACGTCGTTTGAAAAGCAGACTTCTTGCCTTGACTCGGAGAGTTCAGAAGGTTCGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCTGAGATGTATCTCACTGAGAAGAAAAGTCGCATGGAGTCAGCATTTTATGGTGATCAATCTATGATGGGGTACAGATCGACCGACGGTCCATCTCTTTCTGCTCCTGTTTCTCCTGTTTCTTCACCTCCTGATGGCCGAAAGCTTGAGAAAAGCCTGAGCATTGCAAGGAGTAGACATGAAAGCATGAGGAGTTCAGAAAGTGCTAAGGAGAGTATAGAAGAGCTTGAGATGTTGCTGGAAGCATACTTTGTTGTCATTGATAGCACCCTCAATAAGCTGACATCGTTGAAAGAGTACATTGACGACACCGAAGATTTCATTAACATTCAGCTGGATAACGTTCGAAACCAGCTGATTCAATTTGAGTTACTACTCACGACAGCAACGTTTGTTGTTGCCATATTTGGGGTTGTGGCAGGAATATTTGGGATGAATTTCGAAATAGCATTGTTTGATGAACCTGCTGCATTTAAGTGGGTACTTATAATTACAGGAGTAACTGGCTTTTGCATATTTTCTGCATTCGTGTGGTTCTTCAAGTACCGAAGACTGATGCCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0015095 GO:0015318 GO:0015693 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070838 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1903830

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

374

Amino Acids

42.37

Weight (kDa)

4.8

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MRS2-like	PF22099	2 - 197	1.3e-23	Magnesium transporter MRS2-like
MRS2-like	PF22099	251 - 301	6e-07	Magnesium transporter MRS2-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16010 AT1G16010 AT1G16010 AT1G80900 AT1G80900
fragaria_vesca	FvH4_6g28490
malus_domestica	MD09G1225700.v1.1 MD17G1224500.v1.1
prunus_persica	Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1 Prupe.3G100200_v2.0.a1
pyrus_communis	pycom09g14520 pycom17g22820
rosa_chinensis	RchiOBHm_Chr2g0132741
rosa_laevigata	RLG00000019274
rosa_multiflora	Rmu_sc0004972.1_g000001 Rmu_ssc0000074.1_g000006
rosa_roxburghii	Rroxscaffold_2G00111690
rosa_rugosa	Rorug02G0307000 Rorug02G0307000
rosa_samantha	Rh2AG359600 Rh2DG382500
rosa_wichuraiana	Rw2G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	1027
AccI	GTMKAC	1 cut(s)	730
AclI	AACGTT	2 cut(s)	897, 944
AclWI	GGATC	1 cut(s)	41
AcoI	YGGCCR	2 cut(s)	132, 691
AcsI	RAATTY	3 cut(s)	154, 277, 991
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	6 cut(s)	364, 442, 629, 854, 1038, 1100
AfiI	CCNNNNNNNGG	3 cut(s)	495, 689, 963
AgsI	TTSAA	6 cut(s)	154, 401, 472, 847, 917, 1096
AhdI	GACNNNNNGTC	1 cut(s)	642
AjiI	CACGTC	2 cut(s)	429, 464
Alw21I	GWGCWC	3 cut(s)	302, 426, 463
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	41
AoxI	GGCC	2 cut(s)	132, 691
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	4 cut(s)	356, 383, 529, 1022
ApoI	RAATTY	3 cut(s)	154, 277, 991
AspS9I	GGNCC	1 cut(s)	644
AsuHPI	GGTGA	4 cut(s)	236, 297, 620, 672
AsuII	TTCGAA	2 cut(s)	901, 996
AvaII	GGWCC	1 cut(s)	644
BaeGI	GKGCMC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	426
BauI	CACGAG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	1111
Bbv12I	GWGCWC	3 cut(s)	302, 426, 463
BbvI	GCAGC	4 cut(s)	343, 395, 541, 1009
BccI	CCATC	6 cut(s)	80, 236, 539, 616, 655, 683
BceAI	ACGGC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	610
BfaI	CTAG	2 cut(s)	107, 392
BfuAI	ACCTGC	1 cut(s)	1027
BisI	GCNGC	4 cut(s)	357, 384, 530, 1023
BlsI	GCNGC	4 cut(s)	358, 385, 531, 1024
Bme18I	GGWCC	1 cut(s)	644
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmgBI	CACGTC	2 cut(s)	429, 464
BmgT120I	GGNCC	1 cut(s)	644
BmsI	GCATC	1 cut(s)	1101
BpiI	GAAGAC	1 cut(s)	1111
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	2 cut(s)	713, 762
Bpu14I	TTCGAA	2 cut(s)	901, 996
BpuEI	CTTGAG	3 cut(s)	274, 722, 803
Bsa29I	ATCGAT	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	495, 689, 963
Bse1I	ACTGG	2 cut(s)	420, 1063
Bse3DI	GCAATG	1 cut(s)	717
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	5 cut(s)	72, 424, 523, 544, 993
BseLI	CCNNNNNNNGG	3 cut(s)	495, 689, 963
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	4 cut(s)	392, 549, 564, 704
BseNI	ACTGG	2 cut(s)	420, 1063
BseRI	GAGGAG	1 cut(s)	760
BseSI	GKGCMC	1 cut(s)	463
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	4 cut(s)	343, 395, 541, 1009
Bsh1285I	CGRYCG	2 cut(s)	135, 639
BshFI	GGCC	2 cut(s)	134, 693
BshVI	ATCGAT	1 cut(s)	45
BsiEI	CGRYCG	2 cut(s)	135, 639
BsiHKAI	GWGCWC	3 cut(s)	302, 426, 463
BslI	CCNNNNNNNGG	3 cut(s)	495, 689, 963
BsmI	GAATGC	1 cut(s)	1079
BsnI	GGCC	2 cut(s)	134, 693
Bsp119I	TTCGAA	2 cut(s)	901, 996
Bsp1286I	GDGCHC	3 cut(s)	302, 426, 463
Bsp1407I	TGTACA	1 cut(s)	362
Bsp143I	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
BspANI	GGCC	2 cut(s)	134, 693
BspCNI	CTCAG	4 cut(s)	391, 550, 565, 705
BspDI	ATCGAT	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	1027
BspPI	GGATC	1 cut(s)	41
BspQI	GCTCTTC	1 cut(s)	771
BspT104I	TTCGAA	2 cut(s)	901, 996
BsrDI	GCAATG	1 cut(s)	717
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	420, 1063
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	2 cut(s)	76, 771
BstAUI	TGTACA	1 cut(s)	362
BstBI	TTCGAA	2 cut(s)	901, 996
BstDEI	CTNAG	5 cut(s)	378, 558, 573, 713, 762
BstF5I	GGATG	5 cut(s)	72, 424, 523, 544, 993
BstKTI	GATC	6 cut(s)	19, 34, 45, 49, 613, 635
BstMBI	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
BstMCI	CGRYCG	2 cut(s)	135, 639
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	343, 395, 541, 1009
BstV2I	GAAGAC	1 cut(s)	1111
BstZI	CGGCCG	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	134, 693
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	2 cut(s)	429, 464
BtsCI	GGATG	5 cut(s)	72, 424, 523, 544, 993
BtsIMutI	CAGTG	1 cut(s)	570
BveI	ACCTGC	1 cut(s)	1027
Cfr13I	GGNCC	1 cut(s)	644
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	6 cut(s)	363, 441, 628, 853, 1037, 1099
CspCI	CAANNNNNGTGG	4 cut(s)	58, 93, 201, 236
CviAII	CATG	4 cut(s)	535, 589, 734, 742
CviQI	GTAC	6 cut(s)	363, 441, 628, 853, 1037, 1099
DdeI	CTNAG	5 cut(s)	378, 558, 573, 713, 762
DpnI	GATC	6 cut(s)	18, 33, 44, 48, 612, 634
DpnII	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
DriI	GACNNNNNGTC	1 cut(s)	642
EaeI	YGGCCR	2 cut(s)	132, 691
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	76, 771
Eam1105I	GACNNNNNGTC	1 cut(s)	642
EarI	CTCTTC	2 cut(s)	76, 771
Ecl136II	GAGCTC	1 cut(s)	424
EclXI	CGGCCG	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	644
Eco52I	CGGCCG	1 cut(s)	132
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	4 cut(s)	538, 592, 737, 745
FatI	CATG	4 cut(s)	534, 588, 733, 741
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	357, 384, 530, 1023
FokI	GGATG	5 cut(s)	59, 431, 530, 551, 1000
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	4 cut(s)	357, 384, 530, 1023
FspBI	CTAG	2 cut(s)	107, 392
GluI	GCNGC	4 cut(s)	357, 384, 530, 1023
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	134, 693
Hin1II	CATG	4 cut(s)	538, 592, 737, 745
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	6 cut(s)	115, 256, 374, 493, 593, 913
HphI	GGTGA	4 cut(s)	236, 297, 620, 672
Hpy166II	GTNNAC	4 cut(s)	61, 443, 461, 731
Hpy188I	TCNGA	5 cut(s)	198, 241, 498, 507, 754
Hpy188III	TCNNGA	7 cut(s)	29, 107, 350, 371, 515, 686, 934
Hpy8I	GTNNAC	4 cut(s)	61, 443, 461, 731
Hpy99I	CGWCG	3 cut(s)	12, 468, 644
HpyAV	CCTTC	2 cut(s)	75, 502
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	5 cut(s)	428, 457, 463, 897, 944
HpyCH4V	TGCA	6 cut(s)	178, 461, 722, 1025, 1068, 1079
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	5 cut(s)	378, 558, 573, 713, 762
HpySE526I	ACGT	5 cut(s)	428, 457, 463, 897, 944
Hsp92II	CATG	4 cut(s)	538, 592, 737, 745
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	3 cut(s)	190, 297, 664
Lsp1109I	GCAGC	4 cut(s)	343, 395, 541, 1009
LweI	GCATC	1 cut(s)	1101
MaeI	CTAG	2 cut(s)	107, 392
MaeII	ACGT	5 cut(s)	428, 457, 463, 897, 944
MaeIII	GTNAC	2 cut(s)	924, 1054
MalI	GATC	6 cut(s)	18, 33, 44, 48, 612, 634
MboI	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
MboII	GAAGA	9 cut(s)	11, 93, 213, 589, 669, 788, 881, 1084, 1116
MhlI	GDGCHC	3 cut(s)	302, 426, 463
MluCI	AATT	6 cut(s)	154, 277, 396, 917, 991, 1044
MlyI	GAGTC	3 cut(s)	265, 487, 602
MnlI	CCTC	6 cut(s)	133, 260, 346, 693, 738, 836
MseI	TTAA	3 cut(s)	102, 879, 1029
MslI	CAYNNNNRTG	2 cut(s)	1030, 1084
MspA1I	CMGCKG	3 cut(s)	386, 889, 910
Mva1269I	GAATGC	1 cut(s)	1079
MwoI	GCNNNNNNNGC	1 cut(s)	353
NdeII	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
NlaIII	CATG	4 cut(s)	538, 592, 737, 745
NspV	TTCGAA	2 cut(s)	901, 996
PciSI	GCTCTTC	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	2 cut(s)	463, 941
PctI	GAATGC	1 cut(s)	1079
PfeI	GAWTC	3 cut(s)	115, 374, 913
PkrI	GCNGC	4 cut(s)	358, 385, 531, 1024
PleI	GAGTC	3 cut(s)	264, 487, 601
PpsI	GAGTC	3 cut(s)	264, 487, 601
PsiI	TTATAA	1 cut(s)	1043
Psp124BI	GAGCTC	1 cut(s)	426
Psp1406I	AACGTT	2 cut(s)	897, 944
PspPI	GGNCC	1 cut(s)	644
PvuII	CAGCTG	3 cut(s)	386, 889, 910
RsaI	GTAC	6 cut(s)	364, 442, 629, 854, 1038, 1100
RsaNI	GTAC	6 cut(s)	363, 441, 628, 853, 1037, 1099
RseI	CAYNNNNRTG	2 cut(s)	1030, 1084
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	102, 879, 1029
SatI	GCNGC	4 cut(s)	357, 384, 530, 1023
Sau3AI	GATC	6 cut(s)	16, 31, 42, 46, 610, 632
Sau96I	GGNCC	1 cut(s)	644
SchI	GAGTC	3 cut(s)	265, 487, 602
SduI	GDGCHC	3 cut(s)	302, 426, 463
SfaNI	GCATC	1 cut(s)	1101
SfuI	TTCGAA	2 cut(s)	901, 996
SinI	GGWCC	1 cut(s)	644
SmiMI	CAYNNNNRTG	2 cut(s)	1030, 1084
SmlI	CTYRAG	3 cut(s)	253, 701, 782
SmoI	CTYRAG	3 cut(s)	253, 701, 782
Sse9I	AATT	6 cut(s)	154, 277, 396, 917, 991, 1044
SspI	AATATT	1 cut(s)	981
SspMI	CTAG	2 cut(s)	107, 392
SstI	GAGCTC	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	5 cut(s)	431, 460, 466, 900, 947
TaqI	TCGA	6 cut(s)	45, 118, 372, 635, 901, 996
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	6 cut(s)	154, 277, 396, 917, 991, 1044
TatI	WGTACW	3 cut(s)	362, 440, 852
TfiI	GAWTC	3 cut(s)	115, 374, 913
Tru1I	TTAA	3 cut(s)	102, 879, 1029
Tru9I	TTAA	3 cut(s)	102, 879, 1029
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	4 cut(s)	356, 383, 529, 1022
TspDTI	ATGAA	5 cut(s)	534, 750, 865, 1004, 1029
TspRI	CASTG	1 cut(s)	577
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	644
XapI	RAATTY	3 cut(s)	154, 277, 991
XbaI	TCTAGA	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	730
XspI	CTAG	2 cut(s)	107, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.