Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009757

Physical Location & Seq

Genomic Coordinates Reverse (-)

21733667 .. 21734224

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTCTGATTCTATGTCTAGAGAAAGAGGAAAAGATTTCGTCGAAGGATCGTCTGCTGGAGGGTCTCCGAATGATGATCAGCAGCAGCCGGCCACACCAAGCCGCTATGAGTCCCAGAAGAGAAGGGACTGGAACACTTTTGGTCAGTACTTGAAGAACCAGAGGCCTCCAGTGGCGCTGTCTCAGTGCAATTACAACCATGTGCTGGAGTTTCTTAGGTATCTGGACCAGTTTGGGAAGACCAAAGTTCATCTCCAGGGCTGCATGTTTTATGGGCAGCCTGAGCCTCCTGCCCCTTGCACATGTCCACTTAGGCAAGCCTGGGGCAGCCTGGATGCTCTCATAGGGAGGCTGAGGGCGGCCTACGAAGAAAATGGAGGATCCCCGGAGAACAACCCTTTCGCTAGCGGTGCAATCAGGGTTTACCTGAGGGAGGTCAGGGAGTGCCAAGCTAAGGCAAGAGGGATTCCTTATAAGAAGAAGAAGAAGAAGCCAAGTCCAAGTAAGGGATCCGGAGGAAATGATGATGAATCAAGTTCTACCATGCATTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

9.21

Isoelectric Point (pI)

66.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	26 - 148	2.2e-67	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42610 AT2G42610
fragaria_vesca	FvH4_6g27400
malus_domestica	MD09G1237600.v1.1 MD17G1230700.v1.1
prunus_persica	Prupe.3G118100_v2.0.a1 Prupe.3G118100_v2.0.a1
pyrus_communis	pycom09g15600 pycom17g23370
rosa_chinensis	RchiOBHm_Chr2g0129691
rosa_laevigata	RLG00000019099
rosa_multiflora	Rmu_sc0001433.1_g000025
rosa_roxburghii	Rroxscaffold_2G00114330
rosa_rugosa	Rorug02G0288700 Rorug02G0288800
rosa_samantha	Rh2AG339900 Rh2BG348500 Rh2CG327500 Rh2DG366800
rosa_wichuraiana	Rw2G013630 Rw2G027830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	474
AccB7I	CCANNNNNTGG	1 cut(s)	205
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	3 cut(s)	103, 359, 408
AclWI	GGATC	5 cut(s)	55, 375, 388, 504, 517
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	4 cut(s)	205, 433, 454, 506
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	154
AjnI	CCWGG	3 cut(s)	255, 320, 330
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	69, 186
AlwI	GGATC	5 cut(s)	55, 375, 388, 504, 517
Aor13HI	TCCGGA	1 cut(s)	512
AoxI	GGCC	3 cut(s)	90, 164, 360
ApeKI	GCWGC	5 cut(s)	82, 85, 261, 277, 327
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	428
BamHI	GGATCC	2 cut(s)	380, 509
BbsI	GAAGAC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	5 cut(s)	94, 97, 248, 289, 339
BciT130I	CCWGG	3 cut(s)	257, 322, 332
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	69, 186
BfaI	CTAG	2 cut(s)	18, 405
BfoI	RGCGCY	1 cut(s)	179
BisI	GCNGC	7 cut(s)	83, 86, 103, 262, 278, 328, 360
BlsI	GCNGC	7 cut(s)	84, 87, 104, 263, 279, 329, 361
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	4 cut(s)	257, 322, 332, 386
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	382, 511
BmrFI	CCNGG	4 cut(s)	257, 322, 332, 386
BmsI	GCATC	1 cut(s)	325
BmtI	GCTAGC	1 cut(s)	408
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	4 cut(s)	78, 153, 227, 239
Bpu10I	CCTNAGC	3 cut(s)	282, 353, 453
BpuMI	CCSGG	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	256, 321, 384
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 433, 454, 506
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	3 cut(s)	134, 170, 229
Bse21I	CCTNAGG	1 cut(s)	428
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	3 cut(s)	257, 322, 332
BseDI	CCNNGG	3 cut(s)	256, 321, 384
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	205, 433, 454, 506
BseMII	CTCAG	4 cut(s)	197, 273, 344, 419
BseNI	ACTGG	3 cut(s)	134, 170, 229
BseXI	GCAGC	5 cut(s)	94, 97, 248, 289, 339
BshFI	GGCC	3 cut(s)	92, 166, 362
BsiSI	CCGG	3 cut(s)	89, 386, 513
BslFI	GGGAC	2 cut(s)	97, 140
BslI	CCNNNNNNNGG	4 cut(s)	205, 433, 454, 506
BsmAI	GTCTC	2 cut(s)	69, 186
BsmFI	GGGAC	2 cut(s)	97, 140
BsnI	GGCC	3 cut(s)	92, 166, 362
Bso31I	GGTCTC	1 cut(s)	69
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	47, 76, 380, 509
BspACI	CCGC	3 cut(s)	103, 359, 408
BspANI	GGCC	3 cut(s)	92, 166, 362
BspCNI	CTCAG	4 cut(s)	196, 274, 345, 420
BspEI	TCCGGA	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	382, 511
BspOI	GCTAGC	1 cut(s)	408
BspPI	GGATC	5 cut(s)	55, 375, 388, 504, 517
BspTNI	GGTCTC	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	134, 170, 229
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	256, 321, 384
BssMI	GATC	4 cut(s)	47, 76, 380, 509
Bst2UI	CCWGG	3 cut(s)	257, 322, 332
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	90, 318, 406
BstDEI	CTNAG	7 cut(s)	183, 215, 282, 311, 353, 428, 453
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	50, 79, 383, 512
BstMAI	GTCTC	2 cut(s)	69, 186
BstMBI	GATC	4 cut(s)	47, 76, 380, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 410
BstNI	CCWGG	3 cut(s)	257, 322, 332
BstNSI	RCATGY	2 cut(s)	268, 306
BstSCI	CCNGG	4 cut(s)	255, 320, 330, 384
BstV1I	GCAGC	5 cut(s)	94, 97, 248, 289, 339
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	2 cut(s)	380, 509
BstYI	RGATCY	2 cut(s)	380, 509
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	92, 166, 362
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	177, 191
Cac8I	GCNNGC	3 cut(s)	90, 318, 406
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	200, 265, 303, 544
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	7 cut(s)	183, 215, 282, 311, 353, 428, 453
DpnI	GATC	4 cut(s)	49, 78, 382, 511
DpnII	GATC	4 cut(s)	47, 76, 380, 509
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco147I	AGGCCT	1 cut(s)	166
Eco31I	GGTCTC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	226
Eco81I	CCTNAGG	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoRII	CCWGG	3 cut(s)	255, 320, 330
EcoT22I	ATGCAT	1 cut(s)	549
FaeI	CATG	4 cut(s)	203, 268, 306, 547
FaiI	YATR	9 cut(s)	14, 108, 201, 266, 273, 304, 344, 474, 545
FaqI	GGGAC	2 cut(s)	97, 140
FatI	CATG	4 cut(s)	199, 264, 302, 543
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	7 cut(s)	83, 86, 103, 262, 278, 328, 360
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	7 cut(s)	83, 86, 103, 262, 278, 328, 360
FspBI	CTAG	2 cut(s)	18, 405
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	7 cut(s)	83, 86, 103, 262, 278, 328, 360
GsuI	CTGGAG	4 cut(s)	78, 153, 227, 239
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	92, 166, 362
HapII	CCGG	3 cut(s)	89, 386, 513
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	203, 268, 306, 547
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	4 cut(s)	8, 110, 466, 530
HpaII	CCGG	3 cut(s)	89, 386, 513
Hpy166II	GTNNAC	2 cut(s)	308, 424
Hpy188I	TCNGA	2 cut(s)	7, 69
Hpy188III	TCNNGA	4 cut(s)	18, 224, 513, 555
Hpy8I	GTNNAC	2 cut(s)	308, 424
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	2 cut(s)	38, 117
HpyCH4V	TGCA	5 cut(s)	189, 264, 300, 413, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 410
HpyF3I	CTNAG	7 cut(s)	183, 215, 282, 311, 353, 428, 453
Hsp92II	CATG	4 cut(s)	203, 268, 306, 547
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	512
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	47, 76, 380, 509
Lsp1109I	GCAGC	5 cut(s)	94, 97, 248, 289, 339
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	2 cut(s)	18, 405
MalI	GATC	4 cut(s)	49, 78, 382, 511
MboI	GATC	4 cut(s)	47, 76, 380, 509
MboII	GAAGA	8 cut(s)	130, 166, 250, 380, 490, 493, 496, 499
MflI	RGATCY	2 cut(s)	380, 509
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	549
MroI	TCCGGA	1 cut(s)	512
MroNI	GCCGGC	1 cut(s)	88
MspI	CCGG	3 cut(s)	89, 386, 513
MspR9I	CCNGG	4 cut(s)	257, 322, 332, 386
MvaI	CCWGG	3 cut(s)	257, 322, 332
MwoI	GCNNNNNNNGC	2 cut(s)	283, 410
NaeI	GCCGGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	4 cut(s)	47, 76, 380, 509
NgoMIV	GCCGGC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	404
NlaIII	CATG	4 cut(s)	203, 268, 306, 547
NlaIV	GGNNCC	2 cut(s)	382, 511
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	2 cut(s)	268, 306
PceI	AGGCCT	1 cut(s)	166
PciI	ACATGT	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	8, 466, 530
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	84, 87, 104, 263, 279, 329, 361
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PscI	ACATGT	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	255, 320, 330
PspGI	CCWGG	3 cut(s)	255, 320, 330
PspN4I	GGNNCC	2 cut(s)	382, 511
PspPI	GGNCC	1 cut(s)	226
PsuI	RGATCY	2 cut(s)	380, 509
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	7 cut(s)	83, 86, 103, 262, 278, 328, 360
Sau3AI	GATC	4 cut(s)	47, 76, 380, 509
Sau96I	GGNCC	1 cut(s)	226
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	4 cut(s)	257, 322, 332, 386
SetI	ASST	4 cut(s)	221, 429, 438, 454
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	190
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	3 cut(s)	103, 359, 408
SspMI	CTAG	2 cut(s)	18, 405
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	4 cut(s)	255, 320, 330, 384
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	190
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	105, 362
TfiI	GAWTC	3 cut(s)	8, 466, 530
TscAI	CASTG	2 cut(s)	177, 191
TseI	GCWGC	5 cut(s)	82, 85, 261, 277, 327
TspDTI	ATGAA	2 cut(s)	239, 543
TspRI	CASTG	2 cut(s)	177, 191
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	431
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	2 cut(s)	268, 306
XspI	CTAG	2 cut(s)	18, 405
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.