Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013221

Physical Location & Seq

Genomic Coordinates Reverse (-)

24834597 .. 24836819

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTCAGGAGGACCCATCACGCAGGACTGGGAGCCCGTCGTCATCAGAAAGAAGGCACCCAACGCCGCCGCCAAGAAGGATGAGAAAGCCGTCAACGCCGCTCGCCGCTCCGGAGCTGAGATCGAAACCCTCAAGAAAGCAACTGCTGGGACCAATAAAGCTGCCTCCAGCAGCACTACTTTGAACACGAGGAAGCTTGATGATGAAACAGAGAACCTTGCTCATGAACGTGTGCCAAGTGAGCTGAAGAAAGCTATCATGCAAGCTCGAACTGATAAGAAGCTTACCCAGGCTCAACTTGCTCAAATCGATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

106

Amino Acids

11.38

Weight (kDa)

9.64

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	8 - 78	1.1e-24	Multiprotein bridging factor 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42680 AT3G58680
fragaria_vesca	FvH4_6g27570
malus_domestica	MD17G1265800.v1.1 MD17G1265900.v1.1
prunus_persica	Prupe.3G116500_v2.0.a1 Prupe.3G116500_v2.0.a1
pyrus_communis	pycom17g26550 pycom17g26560
rosa_chinensis	RchiOBHm_Chr2g0130001
rosa_laevigata	RLG00000019118
rosa_multiflora	Rmu_co7976164.1_g000001 Rmu_sc0005625.1_g000013 Rmu_sc0009900.1_g000008
rosa_roxburghii	Rroxscaffold_2G00114150
rosa_rugosa	Rorug02G0290900
rosa_samantha	Rh2AG342300
rosa_wichuraiana	Rw2G027710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	55
AccBSI	CCGCTC	2 cut(s)	101, 108
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	4 cut(s)	66, 69, 99, 106
AcuI	CTGAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	7 cut(s)	116, 161, 196, 244, 254, 266, 283
AluI	AGCT	7 cut(s)	116, 161, 196, 244, 254, 266, 283
Aor13HI	TCCGGA	1 cut(s)	110
ApeKI	GCWGC	2 cut(s)	161, 171
AspS9I	GGNCC	2 cut(s)	11, 150
AvaII	GGWCC	2 cut(s)	11, 150
BanI	GGYRCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	148, 183
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	290
BisI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
BlsI	GCNGC	6 cut(s)	67, 70, 100, 107, 163, 173
Bme1390I	CCNGG	1 cut(s)	290
Bme18I	GGWCC	2 cut(s)	11, 150
BmgT120I	GGNCC	2 cut(s)	11, 150
BmiI	GGNNCC	4 cut(s)	13, 33, 57, 151
BmrFI	CCNGG	1 cut(s)	290
BmrI	ACTGGG	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	1 cut(s)	290
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	148, 183
BseYI	CCCAGC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	55
BshVI	ATCGAT	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	120, 310
BspACI	CCGC	4 cut(s)	66, 69, 99, 106
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	309
BspEI	TCCGGA	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	4 cut(s)	13, 33, 57, 151
BspT107I	GGYRCC	1 cut(s)	55
BsrBI	CCGCTC	2 cut(s)	101, 108
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	2 cut(s)	120, 310
BssSI	CACGAG	1 cut(s)	187
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	103, 264
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	123, 313
BstMBI	GATC	2 cut(s)	120, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 95, 241, 299
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	148, 183
Bsu15I	ATCGAT	1 cut(s)	309
BsuTUI	ATCGAT	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	103, 264
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	11, 150
ClaI	ATCGAT	1 cut(s)	309
CviAII	CATG	2 cut(s)	224, 259
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	122, 312
DpnII	GATC	2 cut(s)	120, 310
Eco24I	GRGCYC	1 cut(s)	36
Eco47I	GGWCC	2 cut(s)	11, 150
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	2 cut(s)	227, 262
FaiI	YATR	2 cut(s)	225, 260
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	223, 258
Fnu4HI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
GluI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	151
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	2 cut(s)	227, 262
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	2 cut(s)	194, 281
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	47
Hpy188III	TCNNGA	4 cut(s)	6, 111, 133, 224
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	46, 70
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 95, 241, 299
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	227, 262
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	120, 310
LmnI	GCTCC	3 cut(s)	31, 113, 113
LpnPI	CCDG	7 cut(s)	8, 13, 124, 132, 181, 275, 302
Lsp1109I	GCAGC	2 cut(s)	148, 183
MaeII	ACGT	1 cut(s)	229
MalI	GATC	2 cut(s)	122, 312
MbiI	CCGCTC	2 cut(s)	101, 108
MboI	GATC	2 cut(s)	120, 310
MboII	GAAGA	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	140, 175, 183
MroI	TCCGGA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	62, 95, 241, 299
NdeII	GATC	2 cut(s)	120, 310
NlaIII	CATG	2 cut(s)	227, 262
NlaIV	GGNNCC	4 cut(s)	13, 33, 57, 151
PagI	TCATGA	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	67, 70, 100, 107, 163, 173
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	4 cut(s)	13, 33, 57, 151
PspPI	GGNCC	2 cut(s)	11, 150
PspPPI	RGGWCCY	1 cut(s)	11
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	6 cut(s)	66, 69, 99, 106, 162, 172
Sau3AI	GATC	2 cut(s)	120, 310
Sau96I	GGNCC	2 cut(s)	11, 150
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	9 cut(s)	118, 163, 198, 219, 232, 246, 256, 268, 285
SinI	GGWCC	2 cut(s)	11, 150
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	4 cut(s)	66, 69, 99, 106
StyD4I	CCNGG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	3 cut(s)	123, 268, 309
TauI	GCSGC	4 cut(s)	68, 71, 101, 108
TseI	GCWGC	2 cut(s)	161, 171
TspDTI	ATGAA	2 cut(s)	219, 240
VpaK11BI	GGWCC	2 cut(s)	11, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.