pycom290g00120

Glucose-1-phosphate adenylyltransferase small subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_290
OG0016577
Physical Location & Seq
Reverse (-)
105319 .. 106872
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGGTTATCTTGCAGCGTTGTTTTCCCTCCTTTGTTAGCATCCGAGCAAAGTTCCCCGTTACTGCATCAGATGGTAGTATTCATGAAAACCGTTCCCTCAAGGTTCCTTCTACTACTCTTCCTCCGAGCTTCTTGATATCCAATTCACACCGGTCTCAGACTCCAACTTTGTTGTTTCCTCCAGCCAATCAGAGTGTGGCAGCTGTTGTGTTCGGGGATAGACACGAGTCACAACTTTACCTGCTGACAAAGAGACGATCAGAAGGGACGATACCTATTGTAGCAAATTACAGGCTCATTGATTCAGTTGTAAGCAACTGCATTAGCAGCAACATAAGCCATATATACGCTCTAACACAATTTAACTCTACTTCTCTCAATTCCCACCTTTCCAGAGCTTACTCCGGAGTTTGTCTTGGGAATGCCGGCTTTGTTCAAGTCATTGCCGCGTATCAGAGCCCTGGCAATAACGGATGGTTTCAGGGAACTGCTGATGCTGTGAGAAGAAGTCTGTGGGTGCTGGAAGAGTATCCAATGACTGAGTTTTTGGTCCTTCCTGGTCACCATCTCTACAGAATGGACTACCAGAAACTCATCAAGGCCCACCGAAACAATGACGCTGACATTACAATTGCTGTATCTGTTGCCAGGAGACTTCATGATCCGGGGTTTGGCTTTCTAAATGTGAATTCTCAAAATCAAGTTGTAGATTTCAGATTGAAGTTGGAGGGAAAGCCATTTAATGTTGCTTCAGCCAAAAGCTCAAGTAAATCCAACGATACTGCTCAAAGTAGCATGGCAAGTATGGGAATCTTTCTCATCAACAGAGGTGCAATGAAAAGGCTACTGGAAGAACATTTTCCCAAGGCAAATGACTTCACAAGTGAAGTAATTCCGGGTGCCATATCTATTGGAATGAAGGTTCAAGCATATGCATTTGATGGATATTGGGAGGACCTGAGGAATATTATAGCTTTCTACGAAGCAAATATGCAAAGCGCAAGGGATGCAGATGTGGGATACAAGTCAGTAACTCGAGCTCATACATATAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

353

Amino Acids

39.11

Weight (kDa)

9.35

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 77 - 333 4.4e-36 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05610 AT1G05610
malus_domestica MD02G1000500.v1.1 MD15G1142300.v1.1
prunus_persica Prupe.7G270900_v2.0.a1
pyrus_communis pycom15g12840 pycom290g00110 pycom290g00120
rosa_chinensis RchiOBHm_Chr2g0084401
rosa_multiflora Rmu_co8406699.1_g000001
rosa_roxburghii Rroxscaffold_2G00156130
rosa_samantha Rh2AG001500 Rh2CG001400
rosa_wichuraiana Rw2G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 899
AccII CGCG 1 cut(s) 449
AccIII TCCGGA 1 cut(s) 404
AciI CCGC 1 cut(s) 447
AclWI GGATC 1 cut(s) 656
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 1 cut(s) 735
AfiI CCNNNNNNNGG 1 cut(s) 671
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 437, 721, 926
AjnI CCWGG 3 cut(s) 460, 556, 647
AloI GAACNNNNNNTCC 2 cut(s) 906, 938
AluBI AGCT 6 cut(s) 129, 203, 398, 762, 974, 1040
AluI AGCT 6 cut(s) 129, 203, 398, 762, 974, 1040
Alw21I GWGCWC 1 cut(s) 1042
Alw26I GTCTC 3 cut(s) 159, 247, 646
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 1035
Aor13HI TCCGGA 1 cut(s) 404
AoxI GGCC 1 cut(s) 600
ApeKI GCWGC 3 cut(s) 13, 200, 327
ApoI RAATTY 1 cut(s) 688
ArsI GACNNNNNNTTYG 4 cut(s) 151, 183, 529, 561
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 2 cut(s) 858, 891
AspLEI GCGC 1 cut(s) 1001
AspS9I GGNCC 3 cut(s) 550, 601, 955
AsuC2I CCSGG 2 cut(s) 666, 897
AsuHPI GGTGA 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 1035
AvaII GGWCC 2 cut(s) 550, 955
AxyI CCTNAGG 1 cut(s) 959
BanI GGYRCC 1 cut(s) 899
BanII GRGCYC 2 cut(s) 461, 1042
BarI GAAGNNNNNNTAC 2 cut(s) 255, 287
BauI CACGAG 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 1042
BbvI GCAGC 3 cut(s) 25, 212, 339
BccI CCATC 4 cut(s) 65, 468, 573, 935
BciT130I CCWGG 3 cut(s) 462, 558, 649
BciVI GTATCC 2 cut(s) 540, 1013
BcnI CCSGG 2 cut(s) 666, 897
BcoDI GTCTC 3 cut(s) 159, 247, 646
BfmI CTRYAG 1 cut(s) 571
BfuAI ACCTGC 1 cut(s) 249
BfuI GTATCC 2 cut(s) 540, 1013
BisI GCNGC 4 cut(s) 14, 201, 328, 447
BlsI GCNGC 4 cut(s) 15, 202, 329, 448
Bme1390I CCNGG 5 cut(s) 462, 558, 649, 666, 897
Bme18I GGWCC 2 cut(s) 550, 955
BmeT110I CYCGRG 1 cut(s) 1035
BmgT120I GGNCC 3 cut(s) 550, 601, 955
BmiI GGNNCC 2 cut(s) 105, 901
BmrFI CCNGG 5 cut(s) 462, 558, 649, 666, 897
BmsI GCATC 4 cut(s) 48, 74, 484, 997
BoxI GACNNNNGTC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 2 cut(s) 83, 748
BpuMI CCSGG 2 cut(s) 666, 897
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 460, 665, 864
BsaWI WCCGGW 2 cut(s) 150, 404
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 1 cut(s) 671
Bse118I RCCGGY 2 cut(s) 150, 425
Bse1I ACTGG 1 cut(s) 852
Bse21I CCTNAGG 1 cut(s) 959
Bse3DI GCAATG 2 cut(s) 441, 840
BseAI TCCGGA 1 cut(s) 404
BseBI CCWGG 3 cut(s) 462, 558, 649
BseDI CCNNGG 3 cut(s) 460, 665, 864
BseGI GGATG 3 cut(s) 39, 479, 1012
BseLI CCNNNNNNNGG 1 cut(s) 671
BseMI GCAATG 2 cut(s) 441, 840
BseMII CTCAG 3 cut(s) 170, 531, 950
BseNI ACTGG 1 cut(s) 852
BseXI GCAGC 3 cut(s) 25, 212, 339
Bsh1236I CGCG 1 cut(s) 449
BshFI GGCC 1 cut(s) 602
BshNI GGYRCC 1 cut(s) 899
BshTI ACCGGT 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 1042
BsiHKCI CYCGRG 1 cut(s) 1035
BsiSI CCGG 5 cut(s) 151, 405, 426, 665, 896
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 671
BsmAI GTCTC 3 cut(s) 159, 247, 646
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 1 cut(s) 602
Bso31I GGTCTC 1 cut(s) 159
BsoBI CYCGRG 1 cut(s) 1035
Bsp1286I GDGCHC 2 cut(s) 461, 1042
Bsp13I TCCGGA 1 cut(s) 404
Bsp143I GATC 2 cut(s) 257, 661
BspACI CCGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 602
BspCNI CTCAG 3 cut(s) 169, 532, 951
BspEI TCCGGA 1 cut(s) 404
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 2 cut(s) 82, 658
BspLI GGNNCC 2 cut(s) 105, 901
BspMI ACCTGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 656
BspT107I GGYRCC 1 cut(s) 899
BspTNI GGTCTC 1 cut(s) 159
BsrDI GCAATG 2 cut(s) 441, 840
BsrFI RCCGGY 2 cut(s) 150, 425
BsrI ACTGG 1 cut(s) 852
BssAI RCCGGY 2 cut(s) 150, 425
BssECI CCNNGG 3 cut(s) 460, 665, 864
BssMI GATC 2 cut(s) 257, 661
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 864
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 3 cut(s) 462, 558, 649
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 123, 519
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 3 cut(s) 156, 540, 959
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 3 cut(s) 39, 479, 1012
BstFNI CGCG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 1001
BstKTI GATC 2 cut(s) 260, 664
BstMAI GTCTC 3 cut(s) 159, 247, 646
BstMBI GATC 2 cut(s) 257, 661
BstMWI GCNNNNNNNGC 3 cut(s) 327, 336, 1007
BstNI CCWGG 3 cut(s) 462, 558, 649
BstPAI GACNNNNGTC 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 5 cut(s) 460, 556, 647, 664, 895
BstSFI CTRYAG 1 cut(s) 571
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 25, 212, 339
Bsu36I CCTNAGG 1 cut(s) 959
BsuI GTATCC 2 cut(s) 540, 1013
BsuRI GGCC 1 cut(s) 602
BtsCI GGATG 3 cut(s) 39, 479, 1012
BveI ACCTGC 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 427
CciI TCATGA 2 cut(s) 82, 658
CfoI GCGC 1 cut(s) 1001
Cfr10I RCCGGY 2 cut(s) 150, 425
Cfr13I GGNCC 3 cut(s) 550, 601, 955
CseI GACGC 1 cut(s) 626
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 3 cut(s) 83, 659, 796
DdeI CTNAG 3 cut(s) 156, 540, 959
DpnI GATC 2 cut(s) 259, 663
DpnII GATC 2 cut(s) 257, 661
Eam1104I CTCTTC 2 cut(s) 123, 519
EarI CTCTTC 2 cut(s) 123, 519
Ecl136II GAGCTC 1 cut(s) 1040
Eco130I CCWWGG 1 cut(s) 864
Eco24I GRGCYC 2 cut(s) 461, 1042
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 550, 955
Eco53kI GAGCTC 1 cut(s) 1040
Eco57I CTGAAG 1 cut(s) 735
Eco81I CCTNAGG 1 cut(s) 959
Eco88I CYCGRG 1 cut(s) 1035
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 1040
EcoO109I RGGNCCY 1 cut(s) 955
EcoO65I GGTNACC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 460, 556, 647
EcoRV GATATC 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 864
EcoT22I ATGCAT 1 cut(s) 937
EcoT38I GRGCYC 2 cut(s) 461, 1042
ErhI CCWWGG 1 cut(s) 864
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 86, 662, 799
FaqI GGGAC 1 cut(s) 280
FatI CATG 3 cut(s) 82, 658, 795
FauNDI CATATG 1 cut(s) 931
Fnu4HI GCNGC 4 cut(s) 14, 201, 328, 447
FokI GGATG 3 cut(s) 26, 486, 1019
FriOI GRGCYC 2 cut(s) 461, 1042
Fsp4HI GCNGC 4 cut(s) 14, 201, 328, 447
GlaI GCGC 1 cut(s) 1000
GluI GCNGC 4 cut(s) 14, 201, 328, 447
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 1 cut(s) 602
HapII CCGG 5 cut(s) 151, 405, 426, 665, 896
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 1001
Hin1II CATG 3 cut(s) 86, 662, 799
Hin6I GCGC 1 cut(s) 999
HinP1I GCGC 1 cut(s) 999
HinfI GANTC 4 cut(s) 160, 227, 302, 810
HpaII CCGG 5 cut(s) 151, 405, 426, 665, 896
HphI GGTGA 1 cut(s) 554
Hpy188I TCNGA 8 cut(s) 44, 70, 126, 159, 192, 262, 456, 716
Hpy188III TCNNGA 5 cut(s) 83, 133, 393, 405, 659
HpyAV CCTTC 4 cut(s) 117, 257, 563, 913
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 7 cut(s) 13, 65, 321, 833, 935, 994, 1010
HpyF10VI GCNNNNNNNGC 3 cut(s) 327, 336, 1007
HpyF3I CTNAG 3 cut(s) 156, 540, 959
Hsp92II CATG 3 cut(s) 86, 662, 799
HspAI GCGC 1 cut(s) 999
Kpn2I TCCGGA 1 cut(s) 404
KroI GCCGGC 1 cut(s) 425
KroNI GCCGGC 1 cut(s) 427
Kzo9I GATC 2 cut(s) 257, 661
Lsp1109I GCAGC 3 cut(s) 25, 212, 339
LweI GCATC 4 cut(s) 48, 74, 484, 997
MaeIII GTNAC 4 cut(s) 58, 228, 560, 1030
MalI GATC 2 cut(s) 259, 663
MboI GATC 2 cut(s) 257, 661
MboII GAAGA 4 cut(s) 110, 516, 536, 863
MfeI CAATTG 1 cut(s) 630
MhlI GDGCHC 2 cut(s) 461, 1042
MluCI AATT 7 cut(s) 142, 286, 359, 379, 630, 688, 891
MlyI GAGTC 2 cut(s) 154, 236
MmeI TCCRAC 3 cut(s) 188, 705, 798
MnlI CCTC 8 cut(s) 37, 107, 132, 189, 721, 821, 946, 954
Mph1103I ATGCAT 1 cut(s) 937
MroI TCCGGA 1 cut(s) 404
MroNI GCCGGC 1 cut(s) 425
MroXI GAANNNNTTC 2 cut(s) 858, 891
MseI TTAA 2 cut(s) 363, 741
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 5 cut(s) 151, 405, 426, 665, 896
MspR9I CCNGG 5 cut(s) 462, 558, 649, 666, 897
MunI CAATTG 1 cut(s) 630
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 3 cut(s) 462, 558, 649
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 3 cut(s) 327, 336, 1007
NaeI GCCGGC 1 cut(s) 427
NciI CCSGG 2 cut(s) 666, 897
NdeI CATATG 1 cut(s) 931
NdeII GATC 2 cut(s) 257, 661
NgoMIV GCCGGC 1 cut(s) 425
NlaIII CATG 3 cut(s) 86, 662, 799
NlaIV GGNNCC 2 cut(s) 105, 901
NmuCI GTSAC 2 cut(s) 228, 560
NsiI ATGCAT 1 cut(s) 937
PaeR7I CTCGAG 1 cut(s) 1035
PagI TCATGA 2 cut(s) 82, 658
PctI GAATGC 1 cut(s) 427
PdiI GCCGGC 1 cut(s) 427
PdmI GAANNNNTTC 2 cut(s) 858, 891
PfeI GAWTC 2 cut(s) 302, 810
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 4 cut(s) 15, 202, 329, 448
PleI GAGTC 2 cut(s) 154, 235
PpsI GAGTC 2 cut(s) 154, 235
PpuMI RGGWCCY 1 cut(s) 955
PshAI GACNNNNGTC 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 1042
Psp5II RGGWCCY 1 cut(s) 955
Psp6I CCWGG 3 cut(s) 460, 556, 647
PspEI GGTNACC 1 cut(s) 560
PspGI CCWGG 3 cut(s) 460, 556, 647
PspN4I GGNNCC 2 cut(s) 105, 901
PspPI GGNCC 3 cut(s) 550, 601, 955
PspPPI RGGWCCY 1 cut(s) 955
PspXI VCTCGAGB 1 cut(s) 1035
PvuII CAGCTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 1042
SaqAI TTAA 2 cut(s) 363, 741
SatI GCNGC 4 cut(s) 14, 201, 328, 447
Sau3AI GATC 2 cut(s) 257, 661
Sau96I GGNCC 3 cut(s) 550, 601, 955
SchI GAGTC 2 cut(s) 154, 236
ScrFI CCNGG 5 cut(s) 462, 558, 649, 666, 897
SduI GDGCHC 2 cut(s) 461, 1042
SfaNI GCATC 4 cut(s) 48, 74, 484, 997
SfcI CTRYAG 1 cut(s) 571
Sfr274I CTCGAG 1 cut(s) 1035
SinI GGWCC 2 cut(s) 550, 955
SlaI CTCGAG 1 cut(s) 1035
SmlI CTYRAG 3 cut(s) 98, 763, 1035
SmoI CTYRAG 3 cut(s) 98, 763, 1035
Sse9I AATT 7 cut(s) 142, 286, 359, 379, 630, 688, 891
SsiI CCGC 1 cut(s) 447
SspI AATATT 1 cut(s) 967
SstI GAGCTC 1 cut(s) 1042
StyD4I CCNGG 5 cut(s) 460, 556, 647, 664, 895
StyI CCWWGG 1 cut(s) 864
TaaI ACNGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 1036
TasI AATT 7 cut(s) 142, 286, 359, 379, 630, 688, 891
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 2 cut(s) 302, 810
Tru1I TTAA 2 cut(s) 363, 741
Tru9I TTAA 2 cut(s) 363, 741
TseFI GTSAC 2 cut(s) 228, 560
TseI GCWGC 3 cut(s) 13, 200, 327
Tsp45I GTSAC 2 cut(s) 228, 560
TspDTI ATGAA 5 cut(s) 71, 99, 647, 851, 932
TspGWI ACGGA 1 cut(s) 486
VpaK11BI GGWCC 2 cut(s) 550, 955
XapI RAATTY 1 cut(s) 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XhoI CTCGAG 1 cut(s) 1035
XmnI GAANNNNTTC 2 cut(s) 858, 891
Zsp2I ATGCAT 1 cut(s) 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.