RchiOBHm_Chr7g0192051

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016330
Physical Location & Seq
Reverse (-)
10661484 .. 10666664
5181 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1713 bp
ATGATCATCAGAGCGACAACGGTCACCAAGAACCATCCGAACAATAAAGCCGACGGTGCCGCCGCTCTGCTAAAAGCTTGCTCATCGCTCCGCCGCCTGAAGCAAATCCACGCCCACATTCTCCGCTCCAATCTCCACGGCAACGCCTCCTTAGCCTCCACTCTCATCTCTCTCTACGCCTCTCTCTCCTCATCCTCCCCTCGCTACACCCACCATGTCTTCACCTCTTTCCCCAACCCAAACCTCTCTCTCTTCAACCACGCCATCAGGGCTTTCTCGAAGACCCACTCGCTCTGTTCCGAGGCGATGGTATTGTATAACCAAATGGTTCGCGCGGGAATGAGGCCTGATAACTACAGCTTCCCTTTTATGCTAAATTCGTGTGCCGCGAGAAGTGATATTTTTCAGGGGGTTGAGGTCCATGGCCGCATTGTTAAAACGGGGTTTGGGTTTTGTGTTCCGGTGTCGAATGCTTTGATTGATATGTATGGGAAATGTGGGGAGTTGGAGACCGCACGGAAGGTGTTTGATGAAATGCGTGAAAGAGATGTTGTTTCGTATAATGCGGTTTTAGGGGCACATGCCAGAGGAGGTGTGGATATGGAGAGTGCCGCCGATTTGTTCGAGGGAATGCAGGGGAGAAATGCTATATCTTGGAATGCGATGATTGTGGGGTATGTAAATAGTGGGGATGTGGTCTCGGCTAGGGATGTGTTTGATAGGATGCCGGAGAGGAATGTTGTTTCTTGGACTACAATGCTGGTGGGGTATACTAAAAATGGGTTTATGGATATGGCTAAGGATGTTTTTGATGAAATGCCTGAGCGGAGTTTGATTTGTTGGACGGCTATGATATCAGGATACTCGCAAAATGGGAGGCCAAGTGAAGCACTTTCACTTTTCCGGAGAATGGAGAAATCAGGGGTAAACCCGGATGCGTTTACCATGACAGCATTGATCTCTGCATTGGCACAGTTGGGCCGTGCTGATCTGGCAAATTGGATTGGATCATATGTTGATCGAGAAGGCATAGAACAGAACGAACAAGTGCTCACTGCACTGGTTGACATGCATGCCAAGTGTGGGAATATGGAAGAGGCTTGTCGTGTTTTTGAGAAGATTCCTTGGAAGGATGTTTTCTCCTACAGTGCAATAATCACAGGTCTTGCTTCTCATGGTCATGGGATTAAAGCGCTTGAGATCTTCCGGAGGATGCTGGCAGAAAACATCAAACCTGATCACGTCACATTTGTTGGGGTATTGACTGCCTGTGGCCATGCAGGACTCGTCGAAGATGGAATGACCTATTGGGAAAGCATGATTAAAGATTACAATATTCAGCCTGGTGCAGATCACTATGCTTGCGTGGTTGATATGCTGGGACGTGCTGGGAAGCTTAATGAGGCACACAATTTAGTCAAGGGCATGCCTATGGGTCCACAGCCTGGAGCATTGGGAGCTTTGCTTGCAGCATGTAGAACCTACGGAAATGTAGAGATTGCTGAAAGTATTGCTGAGAAGCTCTTCAAGTTAGAGCCTGAGAATACTGGAAATTATATGCTACTTTCTGGTATCTATGCATCAAAAGAGCGATGGGATGAAGCCAAAAAAGTGCGGGAAGCAATGAACAAGAAAAGTGGAATTAAGCTTCCTGGCTTTAGCTGGGTTGAAATTAGCAAAGGCCATTCAACTCAATTGAAGAACCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

570

Amino Acids

62.86

Weight (kDa)

7.95

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 80 - 129 9.1e-07 PPR repeat family
PPR PF01535 157 - 183 1.8e-06 PPR repeat
PPR PF01535 217 - 247 2.2e-06 PPR repeat
PPR_2 PF13041 245 - 277 1.6e-06 PPR repeat family
PPR PF01535 248 - 276 8.6e-08 PPR repeat
PPR_2 PF13041 278 - 324 6.6e-14 PPR repeat family
PPR PF01535 280 - 309 2e-10 PPR repeat
PPR_long PF17177 280 - 373 1e-05 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 377 - 425 1.1e-08 PPR repeat family
E_motif PF20431 495 - 557 7.4e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016330)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g06640 FvH4_5g06640 FvH4_5g06640
malus_domestica MD06G1162200.v1.1 MD14G1167900.v1.1
prunus_persica Prupe.5G162800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0192051
rosa_laevigata RLG00000004405
rosa_multiflora Rmu_ssc0000421.1_g000037
rosa_roxburghii Rroxscaffold_3G00263330
rosa_rugosa Rorug06G0512800.1
rosa_samantha Rh7BG124700 Rh7CG127400 Rh7DG126200
rosa_wichuraiana Rw7G010480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 1445
AccBSI CCGCTC 3 cut(s) 65, 126, 826
AccI GTMKAC 1 cut(s) 770
AccII CGCG 3 cut(s) 333, 335, 389
AccIII TCCGGA 2 cut(s) 903, 1206
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 2 cut(s) 424, 1273
AcsI RAATTY 2 cut(s) 376, 1707
AcuI CTGAAG 1 cut(s) 119
AfeI AGCGCT 1 cut(s) 1194
AfiI CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
AgsI TTSAA 5 cut(s) 256, 1528, 1670, 1689, 1699
AjiI CACGTC 2 cut(s) 1243, 1385
AjnI CCWGG 3 cut(s) 1342, 1444, 1651
AjuI GAANNNNNNNTTGG 2 cut(s) 1291, 1323
AluBI AGCT 7 cut(s) 77, 360, 1396, 1460, 1522, 1648, 1662
AluI AGCT 7 cut(s) 77, 360, 1396, 1460, 1522, 1648, 1662
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 2 cut(s) 503, 703
AlwI GGATC 1 cut(s) 1015
Aor13HI TCCGGA 2 cut(s) 903, 1206
Aor51HI AGCGCT 1 cut(s) 1194
AoxI GGCC 6 cut(s) 344, 424, 878, 979, 1273, 1681
ApeKI GCWGC 1 cut(s) 1469
ApoI RAATTY 2 cut(s) 376, 1707
Asp700I GAANNNNTTC 1 cut(s) 1523
AspLEI GCGC 2 cut(s) 335, 1195
AspS9I GGNCC 3 cut(s) 418, 979, 1436
AsuC2I CCSGG 1 cut(s) 932
AsuHPI GGTGA 2 cut(s) 16, 214
AvaII GGWCC 2 cut(s) 418, 1436
BaeGI GKGCMC 1 cut(s) 580
BalI TGGCCA 1 cut(s) 1275
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 211, 287
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 1 cut(s) 1481
BccI CCATC 5 cut(s) 42, 272, 301, 1289, 1587
BceAI ACGGC 3 cut(s) 154, 861, 966
BciT130I CCWGG 3 cut(s) 1344, 1446, 1653
BciVI GTATCC 1 cut(s) 854
BclI TGATCA 2 cut(s) 3, 1237
BcnI CCSGG 1 cut(s) 932
BcoDI GTCTC 2 cut(s) 503, 703
BfaI CTAG 1 cut(s) 705
BfmI CTRYAG 2 cut(s) 355, 1144
BfoI RGCGCY 1 cut(s) 1196
BfuI GTATCC 1 cut(s) 854
BglI GCCNNNNNGGC 1 cut(s) 269
BglII AGATCT 1 cut(s) 1200
BisI GCNGC 7 cut(s) 60, 63, 94, 387, 427, 612, 1470
BlsI GCNGC 7 cut(s) 61, 64, 95, 388, 428, 613, 1471
Bme1390I CCNGG 4 cut(s) 932, 1344, 1446, 1653
Bme18I GGWCC 2 cut(s) 418, 1436
BmgBI CACGTC 2 cut(s) 1243, 1385
BmgT120I GGNCC 3 cut(s) 418, 979, 1436
BmiI GGNNCC 2 cut(s) 58, 1437
BmrFI CCNGG 4 cut(s) 932, 1344, 1446, 1653
BmsI GCATC 4 cut(s) 714, 925, 1203, 1589
BoxI GACNNNNGTC 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 211, 287
BpmI CTGGAG 1 cut(s) 1467
Bpu10I CCTNAGC 3 cut(s) 151, 798, 822
BpuEI CTTGAG 1 cut(s) 1217
BpuMI CCSGG 1 cut(s) 932
BsaI GGTCTC 2 cut(s) 503, 703
BsaJI CCNNGG 4 cut(s) 136, 300, 421, 1124
BsaWI WCCGGW 3 cut(s) 460, 903, 1206
BsaXI ACNNNNNCTCC 2 cut(s) 868, 898
Bsc4I CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
Bse1I ACTGG 2 cut(s) 1065, 1552
Bse3DI GCAATG 1 cut(s) 1629
BseAI TCCGGA 2 cut(s) 903, 1206
BseBI CCWGG 3 cut(s) 1344, 1446, 1653
BseDI CCNNGG 4 cut(s) 136, 300, 421, 1124
BseLI CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
BseMI GCAATG 1 cut(s) 1629
BseMII CTCAG 3 cut(s) 813, 1506, 1530
BseNI ACTGG 2 cut(s) 1065, 1552
BseRI GAGGAG 2 cut(s) 178, 603
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 1 cut(s) 1481
BseYI CCCAGC 3 cut(s) 1378, 1388, 1662
BsgI GTGCAG 2 cut(s) 1041, 1368
Bsh1236I CGCG 3 cut(s) 333, 335, 389
BshFI GGCC 6 cut(s) 346, 426, 880, 981, 1275, 1683
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 1053
BsiSI CCGG 5 cut(s) 461, 728, 904, 932, 1207
BslFI GGGAC 1 cut(s) 1395
BslI CCNNNNNNNGG 3 cut(s) 910, 1083, 1445
BsmAI GTCTC 2 cut(s) 503, 703
BsmFI GGGAC 1 cut(s) 1395
BsmI GAATGC 3 cut(s) 475, 636, 664
BsnI GGCC 6 cut(s) 346, 426, 880, 981, 1275, 1683
Bso31I GGTCTC 2 cut(s) 503, 703
Bsp1286I GDGCHC 2 cut(s) 580, 1053
Bsp13I TCCGGA 2 cut(s) 903, 1206
Bsp143I GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
Bsp19I CCATGG 1 cut(s) 421
BspANI GGCC 6 cut(s) 346, 426, 880, 981, 1275, 1683
BspCNI CTCAG 3 cut(s) 814, 1507, 1531
BspEI TCCGGA 2 cut(s) 903, 1206
BspFNI CGCG 3 cut(s) 333, 335, 389
BspLI GGNNCC 2 cut(s) 58, 1437
BspPI GGATC 1 cut(s) 1015
BspQI GCTCTTC 1 cut(s) 1529
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 2 cut(s) 503, 703
BsrBI CCGCTC 3 cut(s) 65, 126, 826
BsrDI GCAATG 1 cut(s) 1629
BsrI ACTGG 2 cut(s) 1065, 1552
BssECI CCNNGG 4 cut(s) 136, 300, 421, 1124
BssMI GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
BssNAI GTATAC 1 cut(s) 771
BssT1I CCWWGG 2 cut(s) 421, 1124
Bst1107I GTATAC 1 cut(s) 771
Bst2UI CCWGG 3 cut(s) 1344, 1446, 1653
Bst4CI ACNGT 4 cut(s) 22, 56, 975, 1148
Bst6I CTCTTC 3 cut(s) 257, 1089, 1529
BstC8I GCNNGC 6 cut(s) 79, 1074, 1218, 1363, 1427, 1467
BstDEI CTNAG 5 cut(s) 151, 798, 822, 1515, 1539
BstDSI CCRYGG 2 cut(s) 136, 421
BstEII GGTNACC 1 cut(s) 22
BstFNI CGCG 3 cut(s) 333, 335, 389
BstH2I RGCGCY 1 cut(s) 1196
BstHHI GCGC 2 cut(s) 335, 1195
BstKTI GATC 8 cut(s) 6, 960, 991, 1010, 1021, 1203, 1240, 1354
BstMAI GTCTC 2 cut(s) 503, 703
BstMBI GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
BstMWI GCNNNNNNNGC 6 cut(s) 56, 152, 269, 992, 1457, 1466
BstNI CCWGG 3 cut(s) 1344, 1446, 1653
BstNSI RCATGY 5 cut(s) 584, 1072, 1076, 1429, 1476
BstPAI GACNNNNGTC 1 cut(s) 20
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 4 cut(s) 930, 1342, 1444, 1651
BstSFI CTRYAG 2 cut(s) 355, 1144
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 3 cut(s) 333, 335, 389
BstV1I GCAGC 1 cut(s) 1481
BstV2I GAAGAC 2 cut(s) 211, 287
BstX2I RGATCY 1 cut(s) 1200
BstYI RGATCY 1 cut(s) 1200
BstZ17I GTATAC 1 cut(s) 771
BsuI GTATCC 1 cut(s) 854
BsuRI GGCC 6 cut(s) 346, 426, 880, 981, 1275, 1683
BtgI CCRYGG 2 cut(s) 136, 421
BtgZI GCGATG 4 cut(s) 69, 320, 677, 1606
BtrI CACGTC 2 cut(s) 1243, 1385
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 3 cut(s) 1053, 1058, 1153
Cac8I GCNNGC 6 cut(s) 79, 1074, 1218, 1363, 1427, 1467
CfoI GCGC 2 cut(s) 335, 1195
Cfr13I GGNCC 3 cut(s) 418, 979, 1436
CspCI CAANNNNNGTGG 4 cut(s) 744, 779, 1618, 1653
DdeI CTNAG 5 cut(s) 151, 798, 822, 1515, 1539
DpnI GATC 8 cut(s) 5, 959, 990, 1009, 1020, 1202, 1239, 1353
DpnII GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
EaeI YGGCCR 2 cut(s) 424, 1273
Eam1104I CTCTTC 3 cut(s) 257, 1089, 1529
EarI CTCTTC 3 cut(s) 257, 1089, 1529
EciI GGCGGA 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 421, 1124
Eco147I AGGCCT 1 cut(s) 346
Eco31I GGTCTC 2 cut(s) 503, 703
Eco32I GATATC 1 cut(s) 855
Eco47I GGWCC 2 cut(s) 418, 1436
Eco47III AGCGCT 1 cut(s) 1194
Eco57I CTGAAG 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 3 cut(s) 1342, 1444, 1651
EcoRV GATATC 1 cut(s) 855
EcoT14I CCWWGG 2 cut(s) 421, 1124
EcoT22I ATGCAT 2 cut(s) 1074, 1582
ErhI CCWWGG 2 cut(s) 421, 1124
FaqI GGGAC 1 cut(s) 1395
FauI CCCGC 2 cut(s) 328, 1608
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 2 cut(s) 3, 1237
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 7 cut(s) 60, 63, 94, 387, 427, 612, 1470
Fsp4HI GCNGC 7 cut(s) 60, 63, 94, 387, 427, 612, 1470
FspBI CTAG 1 cut(s) 705
GlaI GCGC 2 cut(s) 334, 1194
GluI GCNGC 7 cut(s) 60, 63, 94, 387, 427, 612, 1470
GsaI CCCAGC 3 cut(s) 1382, 1392, 1666
GsuI CTGGAG 1 cut(s) 1467
HaeII RGCGCY 1 cut(s) 1196
HaeIII GGCC 6 cut(s) 346, 426, 880, 981, 1275, 1683
HapII CCGG 5 cut(s) 461, 728, 904, 932, 1207
HhaI GCGC 2 cut(s) 335, 1195
Hin6I GCGC 2 cut(s) 333, 1193
HinP1I GCGC 2 cut(s) 333, 1193
HincII GTYRAC 1 cut(s) 1066
HindII GTYRAC 1 cut(s) 1066
HindIII AAGCTT 3 cut(s) 75, 1394, 1646
HinfI GANTC 2 cut(s) 1120, 1284
HpaII CCGG 5 cut(s) 461, 728, 904, 932, 1207
HphI GGTGA 2 cut(s) 16, 214
Hpy166II GTNNAC 5 cut(s) 771, 928, 942, 1066, 1439
Hpy188I TCNGA 3 cut(s) 11, 39, 301
Hpy188III TCNNGA 5 cut(s) 277, 858, 904, 1022, 1207
Hpy8I GTNNAC 5 cut(s) 771, 928, 942, 1066, 1439
Hpy99I CGWCG 2 cut(s) 56, 1292
HpyAV CCTTC 3 cut(s) 514, 1019, 1123
HpyCH4III ACNGT 4 cut(s) 22, 56, 975, 1148
HpyCH4IV ACGT 2 cut(s) 1242, 1384
HpyCH4V TGCA 9 cut(s) 634, 965, 1058, 1072, 1151, 1280, 1349, 1469, 1580
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 152, 269, 992, 1457, 1466
HpyF3I CTNAG 5 cut(s) 151, 798, 822, 1515, 1539
HpySE526I ACGT 2 cut(s) 1242, 1384
HspAI GCGC 2 cut(s) 333, 1193
Kpn2I TCCGGA 2 cut(s) 903, 1206
Ksp22I TGATCA 2 cut(s) 3, 1237
Kzo9I GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
LguI GCTCTTC 1 cut(s) 1529
LmnI GCTCC 4 cut(s) 93, 131, 1448, 1457
Lsp1109I GCAGC 1 cut(s) 1481
LweI GCATC 4 cut(s) 714, 925, 1203, 1589
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 1242, 1384
MaeIII GTNAC 2 cut(s) 22, 1243
MalI GATC 8 cut(s) 5, 959, 990, 1009, 1020, 1202, 1239, 1353
MbiI CCGCTC 3 cut(s) 65, 126, 826
MboI GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
MboII GAAGA 9 cut(s) 211, 244, 292, 1106, 1129, 1195, 1304, 1516, 1711
MfeI CAATTG 1 cut(s) 1694
MflI RGATCY 1 cut(s) 1200
MhlI GDGCHC 2 cut(s) 580, 1053
MlsI TGGCCA 1 cut(s) 1275
MluCI AATT 8 cut(s) 376, 997, 1411, 1552, 1641, 1671, 1694, 1707
MluNI TGGCCA 1 cut(s) 1275
MlyI GAGTC 1 cut(s) 1278
MmeI TCCRAC 2 cut(s) 486, 821
Mox20I TGGCCA 1 cut(s) 1275
Mph1103I ATGCAT 2 cut(s) 1074, 1582
MroI TCCGGA 2 cut(s) 903, 1206
MroXI GAANNNNTTC 1 cut(s) 1523
MscI TGGCCA 1 cut(s) 1275
MseI TTAA 6 cut(s) 435, 1188, 1323, 1398, 1644, 1711
MslI CAYNNNNRTG 2 cut(s) 1179, 1430
Msp20I TGGCCA 1 cut(s) 1275
MspI CCGG 5 cut(s) 461, 728, 904, 932, 1207
MspR9I CCNGG 4 cut(s) 932, 1344, 1446, 1653
MunI CAATTG 1 cut(s) 1694
Mva1269I GAATGC 3 cut(s) 475, 636, 664
MvaI CCWGG 3 cut(s) 1344, 1446, 1653
MvnI CGCG 3 cut(s) 333, 335, 389
MwoI GCNNNNNNNGC 6 cut(s) 56, 152, 269, 992, 1457, 1466
NciI CCSGG 1 cut(s) 932
NcoI CCATGG 1 cut(s) 421
NdeI CATATG 1 cut(s) 1012
NdeII GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
NlaIV GGNNCC 2 cut(s) 58, 1437
NmeAIII GCCGAG 1 cut(s) 680
NmuCI GTSAC 2 cut(s) 22, 1243
NsiI ATGCAT 2 cut(s) 1074, 1582
NspI RCATGY 5 cut(s) 584, 1072, 1076, 1429, 1476
PaeI GCATGC 2 cut(s) 1076, 1429
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 1529
PcsI WCGNNNNNNNCGW 1 cut(s) 386
PctI GAATGC 3 cut(s) 475, 636, 664
PdmI GAANNNNTTC 1 cut(s) 1523
PfeI GAWTC 1 cut(s) 1120
PflMI CCANNNNNTGG 1 cut(s) 1445
PkrI GCNGC 7 cut(s) 61, 64, 95, 388, 428, 613, 1471
PleI GAGTC 1 cut(s) 1278
PpsI GAGTC 1 cut(s) 1278
PshAI GACNNNNGTC 1 cut(s) 20
Psp6I CCWGG 3 cut(s) 1342, 1444, 1651
PspEI GGTNACC 1 cut(s) 22
PspFI CCCAGC 3 cut(s) 1378, 1388, 1662
PspGI CCWGG 3 cut(s) 1342, 1444, 1651
PspN4I GGNNCC 2 cut(s) 58, 1437
PspPI GGNCC 3 cut(s) 418, 979, 1436
PsuI RGATCY 1 cut(s) 1200
RseI CAYNNNNRTG 2 cut(s) 1179, 1430
SapI GCTCTTC 1 cut(s) 1529
SaqAI TTAA 6 cut(s) 435, 1188, 1323, 1398, 1644, 1711
SatI GCNGC 7 cut(s) 60, 63, 94, 387, 427, 612, 1470
Sau3AI GATC 8 cut(s) 3, 957, 988, 1007, 1018, 1200, 1237, 1351
Sau96I GGNCC 3 cut(s) 418, 979, 1436
SchI GAGTC 1 cut(s) 1278
ScrFI CCNGG 4 cut(s) 932, 1344, 1446, 1653
SduI GDGCHC 2 cut(s) 580, 1053
SfaNI GCATC 4 cut(s) 714, 925, 1203, 1589
SfcI CTRYAG 2 cut(s) 355, 1144
SinI GGWCC 2 cut(s) 418, 1436
SmiMI CAYNNNNRTG 2 cut(s) 1179, 1430
SmlI CTYRAG 1 cut(s) 1196
SmoI CTYRAG 1 cut(s) 1196
SphI GCATGC 2 cut(s) 1076, 1429
Sse9I AATT 8 cut(s) 376, 997, 1411, 1552, 1641, 1671, 1694, 1707
SseBI AGGCCT 1 cut(s) 346
SspI AATATT 1 cut(s) 1336
SspMI CTAG 1 cut(s) 705
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 4 cut(s) 930, 1342, 1444, 1651
StyI CCWWGG 2 cut(s) 421, 1124
TaaI ACNGT 4 cut(s) 22, 56, 975, 1148
TaiI ACGT 2 cut(s) 1245, 1387
TaqI TCGA 5 cut(s) 278, 467, 624, 1021, 1290
TasI AATT 8 cut(s) 376, 997, 1411, 1552, 1641, 1671, 1694, 1707
TauI GCSGC 6 cut(s) 62, 65, 96, 389, 429, 614
TfiI GAWTC 1 cut(s) 1120
Tru1I TTAA 6 cut(s) 435, 1188, 1323, 1398, 1644, 1711
Tru9I TTAA 6 cut(s) 435, 1188, 1323, 1398, 1644, 1711
TscAI CASTG 3 cut(s) 1060, 1065, 1153
TseFI GTSAC 2 cut(s) 22, 1243
TseI GCWGC 1 cut(s) 1469
Tsp45I GTSAC 2 cut(s) 22, 1243
TspDTI ATGAA 4 cut(s) 546, 828, 1614, 1640
TspGWI ACGGA 2 cut(s) 532, 1500
TspRI CASTG 3 cut(s) 1060, 1065, 1153
Van91I CCANNNNNTGG 1 cut(s) 1445
VpaK11BI GGWCC 2 cut(s) 418, 1436
XapI RAATTY 2 cut(s) 376, 1707
XceI RCATGY 5 cut(s) 584, 1072, 1076, 1429, 1476
XcmI CCANNNNNNNNNTGG 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 1523
XspI CTAG 1 cut(s) 705
Zsp2I ATGCAT 2 cut(s) 1074, 1582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.