RchiOBHm_Chr7g0208871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016347
Physical Location & Seq
Reverse (-)
26215616 .. 26217203
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1170 bp
ATGAAGATCTCCCTTCGTCTCCAAGACGACCAAGATACCCAACACTACTGCAACCCACTGATCAGAGCCAAAATCCCCATCACCATTTTCAACCAGCCTTTCACTTCTTCAATAGCCACCGCCCCATCCACCAACTCCTCCTCTCACCTCTCCTTTTCTCTCTCCTCAAACTTCTCTTCCGGCCCTTCTCTCAAACTCTCTTACTCTCACGCCTCCACCACCACCCCTTCTCCCTTCTCTCTCTCCCTCAAGTCTGGTTTGGGCCTCTTCGGCTCCCCAAACCACTCCCCTCTTGTTTTCACTGCCCACTTCTCTCTCTCCCACACTAACCCAACTTTCTCTCTCCACATCAAACCCCAATTCGGCAACTTTTCACTGAACAAGTCCGCCTTTTCGGACTCTGAGCTTTCTGGGTCTTGCTCAAATGGTGATTTGGATTCTGGGTCCTGCTCGAACGGTGGTTTTGTGGATGGGTTTGTTGTCTCGGAAGGATCGTCGTCCTGGCAGGAGCTGAGTTTGGAGCCTCGAGGGGGTAAAGATGTGAATGGGGGGATTGGGTCTGTGGAGGAGAGGCAGTTGGGTTTGAAGAACGGTGGGAAAGATGGGTTTTTGAATGGGATTGCTGTGATGGCCAGGACTGTTTTGCCTGTGACGAAAAGAGTGATGGTGAATATGCGGTGGGGCGTGAACTTTCCGGCGAAGTTGGGGACCAAGCTGCCGTATTTGACAGTGAATAAGATTGCTGTGGAGACAGTTGAGGAGGTGAAGGGAGAGGAGGAGAAGAGTGGTGAGAGTAGTGTAAAGGATTTGGAATTGTTGAAGGGGATGTGGTTATGGATGAGGAGGGATTTGGAGGTTTTGGACAAGGAGAATAGGGATATGAAGCAGAGGTTGGAGGATATGAAGTCTGGAGTTTCTGGGAGGCATTTTCGTGGGGAAAGTGATGCTTCGAGGAAGAGAGTGTTGCCGCCATTGGGTGAGACTTCTGGTGAGTTTGAGAGGTGGAGGAACAAGAAGGGTGGGAGAGAAGAGAATGTGCGAACAGAGTCTCACACACCGGTGAAGAGTGTCAGAGAAGAGAGTATTCGGGTGGATTCGAAGAAGTCTACCAATCAGGCAAGTGATTTGGAATCTGAATTGGAGAGAGCTATAAAGGCTGCTACGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

389

Amino Acids

42.55

Weight (kDa)

8.61

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g21440
malus_domestica MD06G1029200.v1.1
prunus_persica Prupe.5G042700_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0208871
rosa_laevigata RLG00000003188
rosa_multiflora Rmu_sc0000532.1_g000005 Rmu_sc0001482.1_g000003 Rmu_sc0016359.1_g000001
rosa_roxburghii Rroxscaffold_3G00250090
rosa_rugosa Rorug07G0107000
rosa_samantha Rh7AG242000 Rh7BG236800 Rh7CG256900 Rh7DG247900
rosa_wichuraiana Rw7G020490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 525
AccI GTMKAC 1 cut(s) 1106
AciI CCGC 4 cut(s) 120, 387, 676, 968
AclWI GGATC 1 cut(s) 499
AcoI YGGCCR 1 cut(s) 630
AfiI CCNNNNNNNGG 3 cut(s) 362, 530, 974
AgeI ACCGGT 1 cut(s) 1057
AgsI TTSAA 5 cut(s) 91, 111, 586, 613, 820
AjnI CCWGG 2 cut(s) 500, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AleI CACNNNNGTG 1 cut(s) 1058
AluBI AGCT 4 cut(s) 406, 511, 715, 1148
AluI AGCT 4 cut(s) 406, 511, 715, 1148
Alw26I GTCTC 5 cut(s) 23, 487, 743, 974, 1053
AlwI GGATC 1 cut(s) 499
AlwNI CAGNNNCTG 1 cut(s) 511
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 3 cut(s) 181, 262, 630
ApeKI GCWGC 2 cut(s) 715, 1157
AsiGI ACCGGT 1 cut(s) 1057
AspS9I GGNCC 4 cut(s) 182, 262, 444, 708
AsuHPI GGTGA 9 cut(s) 73, 137, 440, 679, 775, 800, 989, 1001, 1072
AsuII TTCGAA 1 cut(s) 1097
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 2 cut(s) 444, 708
BalI TGGCCA 1 cut(s) 632
BbvI GCAGC 2 cut(s) 702, 1144
BccI CCATC 6 cut(s) 86, 133, 464, 596, 622, 658
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 2 cut(s) 502, 634
BclI TGATCA 1 cut(s) 60
BcoDI GTCTC 5 cut(s) 23, 487, 743, 974, 1053
BglI GCCNNNNNGGC 1 cut(s) 270
BglII AGATCT 1 cut(s) 6
BisI GCNGC 3 cut(s) 716, 968, 1158
BlsI GCNGC 3 cut(s) 717, 969, 1159
Bme1390I CCNGG 2 cut(s) 502, 634
Bme18I GGWCC 2 cut(s) 444, 708
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 4 cut(s) 182, 262, 444, 708
BmiI GGNNCC 4 cut(s) 274, 445, 522, 709
BmrFI CCNGG 2 cut(s) 502, 634
BmsI GCATC 1 cut(s) 934
BpmI CTGGAG 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 1097
BpuEI CTTGAG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 1057
BsaXI ACNNNNNCTCC 4 cut(s) 214, 244, 560, 590
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 530, 974
Bse118I RCCGGY 1 cut(s) 1057
BseBI CCWGG 2 cut(s) 502, 634
BseGI GGATG 4 cut(s) 125, 475, 831, 843
BseLI CCNNNNNNNGG 3 cut(s) 362, 530, 974
BseMII CTCAG 2 cut(s) 393, 503
BseRI GAGGAG 8 cut(s) 127, 130, 154, 581, 773, 788, 791, 856
BseXI GCAGC 2 cut(s) 702, 1144
BshFI GGCC 3 cut(s) 183, 264, 632
BshTI ACCGGT 1 cut(s) 1057
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 3 cut(s) 180, 695, 1058
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 3 cut(s) 362, 530, 974
BsmAI GTCTC 5 cut(s) 23, 487, 743, 974, 1053
BsmBI CGTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 721
BsnI GGCC 3 cut(s) 183, 264, 632
BsoBI CYCGRG 1 cut(s) 525
Bsp119I TTCGAA 1 cut(s) 1097
Bsp143I GATC 3 cut(s) 6, 60, 491
BspACI CCGC 4 cut(s) 120, 387, 676, 968
BspANI GGCC 3 cut(s) 183, 264, 632
BspCNI CTCAG 2 cut(s) 394, 504
BspLI GGNNCC 4 cut(s) 274, 445, 522, 709
BspPI GGATC 1 cut(s) 499
BspT104I TTCGAA 1 cut(s) 1097
BsrFI RCCGGY 1 cut(s) 1057
BssAI RCCGGY 1 cut(s) 1057
BssMI GATC 3 cut(s) 6, 60, 491
Bst2UI CCWGG 2 cut(s) 502, 634
Bst4CI ACNGT 5 cut(s) 458, 593, 640, 730, 754
Bst6I CTCTTC 7 cut(s) 181, 272, 776, 950, 1023, 1058, 1071
BstBI TTCGAA 1 cut(s) 1097
BstDEI CTNAG 3 cut(s) 402, 512, 1167
BstF5I GGATG 4 cut(s) 125, 475, 831, 843
BstKTI GATC 3 cut(s) 9, 63, 494
BstMAI GTCTC 5 cut(s) 23, 487, 743, 974, 1053
BstMBI GATC 3 cut(s) 6, 60, 491
BstMWI GCNNNNNNNGC 4 cut(s) 270, 629, 1154, 1163
BstNI CCWGG 2 cut(s) 502, 634
BstSCI CCNGG 2 cut(s) 500, 632
BstV1I GCAGC 2 cut(s) 702, 1144
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 3 cut(s) 183, 264, 632
BtsCI GGATG 4 cut(s) 125, 475, 831, 843
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 4 cut(s) 56, 300, 374, 735
CaiI CAGNNNCTG 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 1057
Cfr13I GGNCC 4 cut(s) 182, 262, 444, 708
CspAI ACCGGT 1 cut(s) 1057
CspCI CAANNNNNGTGG 2 cut(s) 1000, 1035
DdeI CTNAG 3 cut(s) 402, 512, 1167
DpnI GATC 3 cut(s) 8, 62, 493
DpnII GATC 3 cut(s) 6, 60, 491
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 7 cut(s) 181, 272, 776, 950, 1023, 1058, 1071
EarI CTCTTC 7 cut(s) 181, 272, 776, 950, 1023, 1058, 1071
EciI GGCGGA 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 444, 708
Eco88I CYCGRG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 500, 632
Esp3I CGTCTC 1 cut(s) 23
FaiI YATR 5 cut(s) 674, 835, 881, 902, 1151
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 931, 963
FaqI GGGAC 1 cut(s) 721
FbaI TGATCA 1 cut(s) 60
FblI GTMKAC 1 cut(s) 1106
Fnu4HI GCNGC 3 cut(s) 716, 968, 1158
FokI GGATG 4 cut(s) 112, 482, 838, 850
Fsp4HI GCNGC 3 cut(s) 716, 968, 1158
GluI GCNGC 3 cut(s) 716, 968, 1158
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 3 cut(s) 183, 264, 632
HapII CCGG 3 cut(s) 180, 695, 1058
HinfI GANTC 5 cut(s) 398, 437, 1046, 1094, 1130
HpaII CCGG 3 cut(s) 180, 695, 1058
HphI GGTGA 9 cut(s) 73, 137, 440, 679, 775, 800, 989, 1001, 1072
Hpy166II GTNNAC 2 cut(s) 688, 1107
Hpy188I TCNGA 6 cut(s) 65, 397, 403, 487, 1073, 1135
Hpy188III TCNNGA 1 cut(s) 909
Hpy8I GTNNAC 2 cut(s) 688, 1107
Hpy99I CGWCG 1 cut(s) 499
HpyAV CCTTC 8 cut(s) 23, 195, 237, 244, 482, 760, 814, 1009
HpyCH4III ACNGT 5 cut(s) 458, 593, 640, 730, 754
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 4 cut(s) 270, 629, 1154, 1163
HpyF3I CTNAG 3 cut(s) 402, 512, 1167
Ksp22I TGATCA 1 cut(s) 60
Kzo9I GATC 3 cut(s) 6, 60, 491
LmnI GCTCC 3 cut(s) 278, 508, 520
Lsp1109I GCAGC 2 cut(s) 702, 1144
LweI GCATC 1 cut(s) 934
MaeIII GTNAC 1 cut(s) 649
MalI GATC 3 cut(s) 8, 62, 493
MboI GATC 3 cut(s) 6, 60, 491
MflI RGATCY 1 cut(s) 6
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 3 cut(s) 359, 812, 1136
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 2 cut(s) 392, 1055
MmeI TCCRAC 1 cut(s) 873
Mox20I TGGCCA 1 cut(s) 632
MscI TGGCCA 1 cut(s) 632
MslI CAYNNNNRTG 2 cut(s) 930, 1058
Msp20I TGGCCA 1 cut(s) 632
MspI CCGG 3 cut(s) 180, 695, 1058
MspR9I CCNGG 2 cut(s) 502, 634
MvaI CCWGG 2 cut(s) 502, 634
MwoI GCNNNNNNNGC 4 cut(s) 270, 629, 1154, 1163
NdeII GATC 3 cut(s) 6, 60, 491
NlaIV GGNNCC 4 cut(s) 274, 445, 522, 709
NmuCI GTSAC 1 cut(s) 649
NspV TTCGAA 1 cut(s) 1097
OliI CACNNNNGTG 1 cut(s) 1058
PaeR7I CTCGAG 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PfeI GAWTC 3 cut(s) 437, 1094, 1130
PinAI ACCGGT 1 cut(s) 1057
PkrI GCNGC 3 cut(s) 717, 969, 1159
PleI GAGTC 2 cut(s) 392, 1054
PpsI GAGTC 2 cut(s) 392, 1054
PpuMI RGGWCCY 1 cut(s) 444
Psp5II RGGWCCY 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 500, 632
PspGI CCWGG 2 cut(s) 500, 632
PspN4I GGNNCC 4 cut(s) 274, 445, 522, 709
PspPI GGNCC 4 cut(s) 182, 262, 444, 708
PspPPI RGGWCCY 1 cut(s) 444
PspXI VCTCGAGB 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 511
PsuI RGATCY 1 cut(s) 6
RseI CAYNNNNRTG 2 cut(s) 930, 1058
SatI GCNGC 3 cut(s) 716, 968, 1158
Sau3AI GATC 3 cut(s) 6, 60, 491
Sau96I GGNCC 4 cut(s) 182, 262, 444, 708
SchI GAGTC 2 cut(s) 392, 1055
ScrFI CCNGG 2 cut(s) 502, 634
SetI ASST 9 cut(s) 150, 408, 513, 717, 765, 858, 893, 1004, 1150
SfaNI GCATC 1 cut(s) 934
Sfr274I CTCGAG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 1097
SgrAI CRCCGGYG 1 cut(s) 1057
SinI GGWCC 2 cut(s) 444, 708
SlaI CTCGAG 1 cut(s) 525
SmiMI CAYNNNNRTG 2 cut(s) 930, 1058
SmlI CTYRAG 2 cut(s) 248, 525
SmoI CTYRAG 2 cut(s) 248, 525
Sse9I AATT 3 cut(s) 359, 812, 1136
SsiI CCGC 4 cut(s) 120, 387, 676, 968
StyD4I CCNGG 2 cut(s) 500, 632
TaaI ACNGT 5 cut(s) 458, 593, 640, 730, 754
TaqI TCGA 4 cut(s) 452, 526, 950, 1097
TasI AATT 3 cut(s) 359, 812, 1136
TauI GCSGC 1 cut(s) 970
TfiI GAWTC 3 cut(s) 437, 1094, 1130
TscAI CASTG 4 cut(s) 63, 307, 381, 735
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 715, 1157
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 17, 896, 917
TspRI CASTG 4 cut(s) 63, 307, 381, 735
VpaK11BI GGWCC 2 cut(s) 444, 708
XhoI CTCGAG 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.