Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011865

Physical Location & Seq

Genomic Coordinates Forward (+)

36704308 .. 36704652

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAATGCTCAATCTTCCTTTCATGGTTTTGGCTGCCTTTGCGGTGATAGGAATTCTTCTCTCCAGTGAAGTCGATGTGGTTCTGGGGCAGGCTTGCCAAGGTGACATGCAAGGTCTGATAACGCAATGTGCAGCTTATGTTCGGAAGGGTACTCTATTGCCGCCAACGCCGTCTCAAGGATGCTGCACGGCAATCAGAACGTTAGACATTCCATGCGCGTGCCAGCACATGACGAAGATGGTCGAGCAGCTGGTTGACATGGACAAGGTGGTTAAGGTCGTTAGATCCTGTGGTATCGATATTCCTCGTGGAATGAAGTGTGGAAGTAAGATTCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

114

Amino Acids

12.23

Weight (kDa)

7.51

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	28 - 108	4e-13	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 108	3.8e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011865)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33550 AT4G33550
fragaria_vesca	FvH4_3g29300 FvH4_7g02210
malus_domestica	MD02G1296300.v1.1 MD02G1296400.v1.1
prunus_persica	Prupe.2G028300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0218541
rosa_laevigata	RLG00000002359
rosa_multiflora	Rmu_sc0001301.1_g000031
rosa_roxburghii	Rroxscaffold_3G00240850
rosa_rugosa	Rorug01G0028000 Rorug01G0215600 Rorug07G0178300
rosa_samantha	Rh7BG311200 Rh7CG336300 Rh7DG318500
rosa_wichuraiana	Rw1G003290 Rw7G027210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	221
AciI	CCGC	2 cut(s)	44, 164
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	54
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	137, 253
AluI	AGCT	2 cut(s)	137, 253
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	282
ApeKI	GCWGC	4 cut(s)	35, 134, 186, 250
ApoI	RAATTY	1 cut(s)	54
AspLEI	GCGC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	58, 116
BauI	CACGAG	1 cut(s)	309
BbvI	GCAGC	4 cut(s)	22, 146, 173, 262
BccI	CCATC	1 cut(s)	235
BceAI	ACGGC	2 cut(s)	157, 207
BcoDI	GTCTC	1 cut(s)	180
BisI	GCNGC	5 cut(s)	36, 135, 164, 187, 251
BlsI	GCNGC	5 cut(s)	37, 136, 165, 188, 252
BmsI	GCATC	1 cut(s)	173
BpmI	CTGGAG	1 cut(s)	49
BpuEI	CTTGAG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	1 cut(s)	188
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	22, 146, 173, 262
BsgI	GTGCAG	2 cut(s)	153, 172
Bsh1236I	CGCG	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	180
BsmBI	CGTCTC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	2 cut(s)	44, 164
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	221
BspPI	GGATC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	287
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	309
BstC8I	GCNNGC	4 cut(s)	93, 97, 223, 227
BstF5I	GGATG	1 cut(s)	188
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 169
BstNSI	RCATGY	1 cut(s)	112
BstUI	CGCG	1 cut(s)	221
BstV1I	GCAGC	4 cut(s)	22, 146, 173, 262
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	4 cut(s)	93, 97, 223, 227
CfoI	GCGC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	5 cut(s)	25, 109, 216, 232, 262
CviJI	RGCY	4 cut(s)	35, 95, 137, 253
CviKI_1	RGCY	4 cut(s)	35, 95, 137, 253
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	5 cut(s)	28, 112, 219, 235, 265
FaiI	YATR	6 cut(s)	26, 110, 141, 217, 233, 263
FatI	CATG	5 cut(s)	24, 108, 215, 231, 261
Fnu4HI	GCNGC	5 cut(s)	36, 135, 164, 187, 251
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	5 cut(s)	36, 135, 164, 187, 251
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	5 cut(s)	36, 135, 164, 187, 251
GsuI	CTGGAG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	5 cut(s)	28, 112, 219, 235, 265
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	2 cut(s)	58, 116
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	120, 147, 200
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	112, 134, 189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 169
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	5 cut(s)	28, 112, 219, 235, 265
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	287
LpnPI	CCDG	6 cut(s)	71, 77, 79, 239, 239, 304
Lsp1109I	GCAGC	4 cut(s)	22, 146, 173, 262
LweI	GCATC	1 cut(s)	173
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	3 cut(s)	8, 50, 250
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	2 cut(s)	54, 340
MnlI	CCTC	1 cut(s)	318
MseI	TTAA	2 cut(s)	276, 343
MslI	CAYNNNNRTG	1 cut(s)	220
MspA1I	CMGCKG	1 cut(s)	253
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	41, 169
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	28, 112, 219, 235, 265
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	37, 136, 165, 188, 252
Psp1406I	AACGTT	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	276, 343
SatI	GCNGC	5 cut(s)	36, 135, 164, 187, 251
Sau3AI	GATC	1 cut(s)	287
SetI	ASST	7 cut(s)	106, 118, 139, 206, 255, 273, 282
SfaNI	GCATC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	54, 340
SsiI	CCGC	2 cut(s)	44, 164
StyI	CCWWGG	1 cut(s)	100
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	75, 246, 300
TasI	AATT	2 cut(s)	54, 340
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	2 cut(s)	276, 343
Tru9I	TTAA	2 cut(s)	276, 343
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	4 cut(s)	35, 134, 186, 250
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	13, 332
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	54
XceI	RCATGY	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.