Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011951

Physical Location & Seq

Genomic Coordinates Forward (+)

49416624 .. 49418018

Gene Structure 1395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTGCAACAACTGGTGCAATGCTTAATGGGTTGAACTCCACTTTCTTATGTGGAGGCAAGAGAAGCCAGAGCTTGTTGTCTGCTGGTGCTGCGGCCAGAGTTGGAGGCTCTGTTGCTCCCAAGAGGTTCATTGTTGTGGCTGCTGCGGCTTCCAAGAAGTCTTGGATCCCCGGCGTTAGAGGCGGTGGCAACTTCATCAACCCCGAGTGGCTCGATGGCTCGCTTCCAGGTGACTATGGTTTCGACCCTCTGGGACTAGGCAAGGATCCGGCCTTCCTCAAGTGGTACAGAGAGGCTGAACTGATCCACGGGCGGTGGGCAATGGCAGCGGTGGTGGGCATCTTTGTAGGGCAGGCCTGGAGTGGTGTTCCCTGGTTCGAAGCCGGAGCTGACCCCAGTGCAATAGCACCCTTCTCCTTCGGCTCCCTTCTTGGGACTCAGCTCCTGCTCATGGGTTGGGTGGAAAGCAAAAGATGGGTGGACTTCTACAACCCTGAGTCGCAGTCCGTGGAGTGGGCTACACCATGGTCCAAGACTGCCGAGAACTTTTCCAACGCCACCGGAGAGCAAGGCTACCCGGGAGGCAAGTTCTTCGATCCCTTGGGCTTAGCCGGCTCCATCAAGGACGGAGTTTACATCCCGGACACTGAGAAGTTGGAGAGACTGAAATTGGCTGAGATCAAGCATGCAAGGCTTGCTATGGTGGCTATGCTTATTTTCTACTTTGAGGCTGGACAGGGGAAGACACCCCTTGGTGCTCTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

257

Amino Acids

27.38

Weight (kDa)

7.79

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	69 - 245	1.2e-44	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011951)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15820
fragaria_vesca	FvH4_5g30940
malus_domestica	MD08G1220900.v1.1 MD15G1411600.v1.1
prunus_persica	Prupe.1G557800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0226291
rosa_laevigata	RLG00000001754 RLG00000027365
rosa_multiflora	Rmu_co8464105.1_g000001 Rmu_sc0002055.1_g000006 Rmu_sc0003972.1_g000006
rosa_roxburghii	Rroxscaffold_3G00233080
rosa_rugosa	Rorug07G0236200
rosa_samantha	Rh7AG383200 Rh7BG370100 Rh7CG402900 Rh7DG381500
rosa_wichuraiana	Rw0G017540 Rw0G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	95, 149, 186, 316, 332
AclWI	GGATC	6 cut(s)	163, 176, 263, 276, 301, 593
AcoI	YGGCCR	1 cut(s)	96
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	435, 454, 516
AgsI	TTSAA	1 cut(s)	37
AjnI	CCWGG	3 cut(s)	229, 359, 374
AluBI	AGCT	3 cut(s)	75, 392, 445
AluI	AGCT	3 cut(s)	75, 392, 445
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	658
AlwI	GGATC	6 cut(s)	163, 176, 263, 276, 301, 593
AlwNI	CAGNNNCTG	1 cut(s)	448
Ama87I	CYCGRG	2 cut(s)	206, 580
AoxI	GGCC	3 cut(s)	96, 273, 357
ApeKI	GCWGC	5 cut(s)	5, 92, 143, 146, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	531
AsuC2I	CCSGG	4 cut(s)	174, 581, 582, 644
AsuHPI	GGTGA	1 cut(s)	245
AsuII	TTCGAA	1 cut(s)	381
AvaI	CYCGRG	2 cut(s)	206, 580
AvaII	GGWCC	1 cut(s)	531
BamHI	GGATCC	2 cut(s)	168, 268
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	4 cut(s)	79, 130, 133, 341
BccI	CCATC	3 cut(s)	212, 471, 629
BcgI	CGANNNNNNTGC	2 cut(s)	577, 611
BciT130I	CCWGG	3 cut(s)	231, 361, 376
BcnI	CCSGG	4 cut(s)	174, 581, 582, 644
BcoDI	GTCTC	1 cut(s)	658
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	7 cut(s)	6, 93, 96, 144, 147, 150, 330
BlpI	GCTNAGC	1 cut(s)	610
BlsI	GCNGC	7 cut(s)	7, 94, 97, 145, 148, 151, 331
Bme1390I	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
Bme18I	GGWCC	1 cut(s)	531
BmeT110I	CYCGRG	2 cut(s)	206, 580
BmgT120I	GGNCC	1 cut(s)	531
BmiI	GGNNCC	4 cut(s)	170, 270, 427, 619
BmrFI	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
BmrI	ACTGGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	752
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	610
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	4 cut(s)	174, 581, 582, 644
BsaJI	CCNNGG	8 cut(s)	172, 310, 374, 510, 527, 580, 603, 754
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 454, 516
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	2 cut(s)	19, 399
Bse3DI	GCAATG	2 cut(s)	27, 330
BseBI	CCWGG	3 cut(s)	231, 361, 376
BseDI	CCNNGG	8 cut(s)	172, 310, 374, 510, 527, 580, 603, 754
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	3 cut(s)	435, 454, 516
BseMI	GCAATG	2 cut(s)	27, 330
BseMII	CTCAG	4 cut(s)	455, 489, 642, 669
BseNI	ACTGG	2 cut(s)	19, 399
BseXI	GCAGC	4 cut(s)	79, 130, 133, 341
BshFI	GGCC	3 cut(s)	98, 275, 359
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	2 cut(s)	206, 580
BsiSI	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
BslFI	GGGAC	2 cut(s)	270, 451
BslI	CCNNNNNNNGG	3 cut(s)	435, 454, 516
BsmAI	GTCTC	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	270, 451
BsnI	GGCC	3 cut(s)	98, 275, 359
BsoBI	CYCGRG	2 cut(s)	206, 580
Bsp119I	TTCGAA	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	763
Bsp143I	GATC	5 cut(s)	168, 268, 306, 598, 681
Bsp1720I	GCTNAGC	1 cut(s)	610
Bsp19I	CCATGG	1 cut(s)	527
BspACI	CCGC	5 cut(s)	95, 149, 186, 316, 332
BspANI	GGCC	3 cut(s)	98, 275, 359
BspCNI	CTCAG	4 cut(s)	454, 490, 643, 670
BspLI	GGNNCC	4 cut(s)	170, 270, 427, 619
BspPI	GGATC	6 cut(s)	163, 176, 263, 276, 301, 593
BspT104I	TTCGAA	1 cut(s)	381
BsrDI	GCAATG	2 cut(s)	27, 330
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	2 cut(s)	19, 399
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	8 cut(s)	172, 310, 374, 510, 527, 580, 603, 754
BssMI	GATC	5 cut(s)	168, 268, 306, 598, 681
BssT1I	CCWWGG	3 cut(s)	527, 603, 754
Bst2UI	CCWGG	3 cut(s)	231, 361, 376
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	5 cut(s)	224, 357, 616, 690, 699
BstDEI	CTNAG	5 cut(s)	441, 498, 610, 651, 678
BstDSI	CCRYGG	3 cut(s)	310, 510, 527
BstF5I	GGATG	1 cut(s)	639
BstKTI	GATC	5 cut(s)	171, 271, 309, 601, 684
BstMAI	GTCTC	1 cut(s)	658
BstMBI	GATC	5 cut(s)	168, 268, 306, 598, 681
BstMWI	GCNNNNNNNGC	9 cut(s)	66, 92, 149, 183, 329, 615, 694, 698, 707
BstNI	CCWGG	3 cut(s)	231, 361, 376
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	7 cut(s)	172, 229, 359, 374, 579, 580, 642
BstV1I	GCAGC	4 cut(s)	79, 130, 133, 341
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	2 cut(s)	168, 268
BstYI	RGATCY	2 cut(s)	168, 268
BsuRI	GGCC	3 cut(s)	98, 275, 359
BtgI	CCRYGG	3 cut(s)	310, 510, 527
BtsCI	GGATG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	406, 648
Cac8I	GCNNGC	5 cut(s)	224, 357, 616, 690, 699
CaiI	CAGNNNCTG	1 cut(s)	448
Cfr10I	RCCGGY	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	531
Cfr9I	CCCGGG	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	3 cut(s)	454, 528, 689
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	5 cut(s)	441, 498, 610, 651, 678
DpnI	GATC	5 cut(s)	170, 270, 308, 600, 683
DpnII	GATC	5 cut(s)	168, 268, 306, 598, 681
EaeI	YGGCCR	1 cut(s)	96
Eco130I	CCWWGG	3 cut(s)	527, 603, 754
Eco147I	AGGCCT	1 cut(s)	359
Eco47I	GGWCC	1 cut(s)	531
Eco88I	CYCGRG	2 cut(s)	206, 580
EcoRII	CCWGG	3 cut(s)	229, 359, 374
EcoT14I	CCWWGG	3 cut(s)	527, 603, 754
ErhI	CCWWGG	3 cut(s)	527, 603, 754
FaeI	CATG	3 cut(s)	457, 531, 692
FaiI	YATR	7 cut(s)	52, 240, 455, 529, 690, 704, 713
FaqI	GGGAC	2 cut(s)	270, 451
FatI	CATG	3 cut(s)	453, 527, 688
Fnu4HI	GCNGC	7 cut(s)	6, 93, 96, 144, 147, 150, 330
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	7 cut(s)	6, 93, 96, 144, 147, 150, 330
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	7 cut(s)	6, 93, 96, 144, 147, 150, 330
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	3 cut(s)	98, 275, 359
HapII	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
Hin1II	CATG	3 cut(s)	457, 531, 692
HinfI	GANTC	2 cut(s)	439, 500
HpaII	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	484, 637
Hpy8I	GTNNAC	2 cut(s)	484, 637
HpyAV	CCTTC	4 cut(s)	286, 424, 430, 440
HpyCH4V	TGCA	4 cut(s)	8, 20, 404, 692
HpyF10VI	GCNNNNNNNGC	9 cut(s)	66, 92, 149, 183, 329, 615, 694, 698, 707
HpyF3I	CTNAG	5 cut(s)	441, 498, 610, 651, 678
Hsp92II	CATG	3 cut(s)	457, 531, 692
KroI	GCCGGC	1 cut(s)	614
KroNI	GCCGGC	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	168, 268, 306, 598, 681
LmnI	GCTCC	5 cut(s)	124, 389, 431, 450, 623
Lsp1109I	GCAGC	4 cut(s)	79, 130, 133, 341
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	5 cut(s)	170, 270, 308, 600, 683
MboI	GATC	5 cut(s)	168, 268, 306, 598, 681
MboII	GAAGA	2 cut(s)	586, 757
MflI	RGATCY	2 cut(s)	168, 268
MhlI	GDGCHC	1 cut(s)	763
MluCI	AATT	1 cut(s)	671
MlyI	GAGTC	2 cut(s)	433, 509
MmeI	TCCRAC	3 cut(s)	85, 579, 639
MnlI	CCTC	9 cut(s)	50, 101, 120, 176, 261, 289, 290, 578, 724
MroNI	GCCGGC	1 cut(s)	614
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	7 cut(s)	174, 272, 387, 564, 581, 615, 644
MspR9I	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
MvaI	CCWGG	3 cut(s)	231, 361, 376
MwoI	GCNNNNNNNGC	9 cut(s)	66, 92, 149, 183, 329, 615, 694, 698, 707
NaeI	GCCGGC	1 cut(s)	616
NciI	CCSGG	4 cut(s)	174, 581, 582, 644
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	5 cut(s)	168, 268, 306, 598, 681
NgoMIV	GCCGGC	1 cut(s)	614
NlaIII	CATG	3 cut(s)	457, 531, 692
NlaIV	GGNNCC	4 cut(s)	170, 270, 427, 619
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	1 cut(s)	692
NspV	TTCGAA	1 cut(s)	381
PaeI	GCATGC	1 cut(s)	692
PceI	AGGCCT	1 cut(s)	359
PdiI	GCCGGC	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	642
PkrI	GCNGC	7 cut(s)	7, 94, 97, 145, 148, 151, 331
PleI	GAGTC	2 cut(s)	433, 508
PpsI	GAGTC	2 cut(s)	433, 508
Psp6I	CCWGG	3 cut(s)	229, 359, 374
PspGI	CCWGG	3 cut(s)	229, 359, 374
PspN4I	GGNNCC	4 cut(s)	170, 270, 427, 619
PspPI	GGNCC	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	168, 268
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	7 cut(s)	6, 93, 96, 144, 147, 150, 330
Sau3AI	GATC	5 cut(s)	168, 268, 306, 598, 681
Sau96I	GGNCC	1 cut(s)	531
SchI	GAGTC	2 cut(s)	433, 509
ScrFI	CCNGG	7 cut(s)	174, 231, 361, 376, 581, 582, 644
SduI	GDGCHC	1 cut(s)	763
SetI	ASST	5 cut(s)	77, 131, 235, 394, 447
SfaNI	GCATC	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	531
SmaI	CCCGGG	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	1 cut(s)	671
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	5 cut(s)	95, 149, 186, 316, 332
SspMI	CTAG	1 cut(s)	260
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	7 cut(s)	172, 229, 359, 374, 579, 580, 642
StyI	CCWWGG	3 cut(s)	527, 603, 754
TaqI	TCGA	4 cut(s)	216, 246, 381, 597
TasI	AATT	1 cut(s)	671
TauI	GCSGC	2 cut(s)	98, 152
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	406, 655
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	5 cut(s)	5, 92, 143, 146, 329
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	2 cut(s)	121, 187
TspGWI	ACGGA	2 cut(s)	499, 645
TspMI	CCCGGG	1 cut(s)	580
TspRI	CASTG	2 cut(s)	406, 655
VpaK11BI	GGWCC	1 cut(s)	531
XceI	RCATGY	1 cut(s)	692
XmaI	CCCGGG	1 cut(s)	580
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.