RchiOBHm_Chr6g0253971

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015087
Physical Location & Seq
Forward (+)
9078660 .. 9079568
909 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 384 bp
ATGTTATTGGGTAGCACTCGCGCTATGACAAGTGGAGGGGTTTCAAAATCAAAGATATTTCTTCTCAGTTCATGCCGGGAAGCTAAGCGAGTGGATCAACGCTACTTCTGCAAGCTAAGTGGAACTGAGGAAGGATCAAGCAGAAAGAAGAAAAGTCACGAGCGGCCGGATATGGAGAGTTCGAGTTCACAGAGCAGCAGCTGGGTTCCGGATCCACGCACCGGAATATATATTCCGAAAGGGCATGAACGGGTGATGGATGATGTCCCTAAAGGAGCAGCATCTCTTAATAACCAGACTTTCTGGCTGAGGAACGTGGATGGTGTACTTGAGAAACCCGACCCGGATACTGCCCCTGACCATTACTACCAAATGCATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

127

Amino Acids

14.27

Weight (kDa)

8.93

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 41 - 98 1.7e-08 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19550
fragaria_vesca FvH4_2g04480
malus_domestica MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica Prupe.8G140400_v2.0.a1
pyrus_communis pycom05g09470
rosa_chinensis RchiOBHm_Chr6g0253971
rosa_laevigata RLG00000014952
rosa_multiflora Rmu_sc0001716.1_g000012
rosa_roxburghii Rroxscaffold_7G00211360
rosa_rugosa Rorug05G0548700
rosa_samantha Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana Rw6G005730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 163
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 1 cut(s) 163
AclWI GGATC 4 cut(s) 102, 142, 206, 219
AcoI YGGCCR 1 cut(s) 164
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 45
AluBI AGCT 3 cut(s) 83, 115, 201
AluI AGCT 3 cut(s) 83, 115, 201
AlwI GGATC 4 cut(s) 102, 142, 206, 219
AlwNI CAGNNNCTG 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 3 cut(s) 195, 198, 278
AspLEI GCGC 1 cut(s) 23
AsuC2I CCSGG 2 cut(s) 77, 344
AsuHPI GGTGA 1 cut(s) 265
BamHI GGATCC 1 cut(s) 211
BauI CACGAG 1 cut(s) 158
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 207, 210, 290
BccI CCATC 2 cut(s) 250, 314
BciVI GTATCC 1 cut(s) 340
BcnI CCSGG 2 cut(s) 77, 344
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 4 cut(s) 164, 196, 199, 279
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 4 cut(s) 165, 197, 200, 280
Bme1390I CCNGG 2 cut(s) 77, 344
BmiI GGNNCC 2 cut(s) 207, 213
BmrFI CCNGG 2 cut(s) 77, 344
BmsI GCATC 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 77, 344
BsaWI WCCGGW 2 cut(s) 208, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 208
BseGI GGATG 2 cut(s) 265, 325
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 3 cut(s) 79, 117, 299
BseX3I CGGCCG 1 cut(s) 164
BseXI GCAGC 3 cut(s) 207, 210, 290
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 167
BsiSI CCGG 5 cut(s) 76, 167, 209, 222, 344
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 166
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 3 cut(s) 94, 134, 211
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 3 cut(s) 78, 118, 300
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 207, 213
BspPI GGATC 4 cut(s) 102, 142, 206, 219
BsrBI CCGCTC 1 cut(s) 163
BssMI GATC 3 cut(s) 94, 134, 211
BssSI CACGAG 1 cut(s) 158
Bst2BI CACGAG 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 5 cut(s) 65, 84, 116, 126, 308
BstF5I GGATG 2 cut(s) 265, 325
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 97, 137, 214
BstMBI GATC 3 cut(s) 94, 134, 211
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstSCI CCNGG 2 cut(s) 75, 342
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 207, 210, 290
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 164
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 2 cut(s) 265, 325
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 201
CfoI GCGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 326
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 2 cut(s) 72, 245
CviJI RGCY 5 cut(s) 83, 115, 166, 201, 307
CviKI_1 RGCY 5 cut(s) 83, 115, 166, 201, 307
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 5 cut(s) 65, 84, 116, 126, 308
DpnI GATC 3 cut(s) 96, 136, 213
DpnII GATC 3 cut(s) 94, 134, 211
EaeI YGGCCR 1 cut(s) 164
EagI CGGCCG 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 164
Eco52I CGGCCG 1 cut(s) 164
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 2 cut(s) 75, 248
FaiI YATR 8 cut(s) 26, 73, 173, 229, 231, 246, 378, 380
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 71, 244
FauNDI CATATG 1 cut(s) 378
Fnu4HI GCNGC 4 cut(s) 164, 196, 199, 279
FokI GGATG 2 cut(s) 272, 332
Fsp4HI GCNGC 4 cut(s) 164, 196, 199, 279
GlaI GCGC 1 cut(s) 22
GluI GCNGC 4 cut(s) 164, 196, 199, 279
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 166
HapII CCGG 5 cut(s) 76, 167, 209, 222, 344
HhaI GCGC 1 cut(s) 23
Hin1II CATG 2 cut(s) 75, 248
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HpaII CCGG 5 cut(s) 76, 167, 209, 222, 344
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 2 cut(s) 188, 326
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 158, 209
Hpy8I GTNNAC 2 cut(s) 188, 326
HpyAV CCTTC 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 111, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 5 cut(s) 65, 84, 116, 126, 308
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 75, 248
HspAI GCGC 1 cut(s) 21
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 94, 134, 211
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 9 cut(s) 89, 180, 187, 222, 235, 289, 308, 357, 369
Lsp1109I GCAGC 3 cut(s) 207, 210, 290
LweI GCATC 1 cut(s) 290
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 155
MalI GATC 3 cut(s) 96, 136, 213
MbiI CCGCTC 1 cut(s) 163
MboI GATC 3 cut(s) 94, 134, 211
MboII GAAGA 2 cut(s) 53, 160
MflI RGATCY 1 cut(s) 211
MnlI CCTC 3 cut(s) 29, 121, 303
Mph1103I ATGCAT 1 cut(s) 378
MroI TCCGGA 1 cut(s) 208
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 5 cut(s) 76, 167, 209, 222, 344
MspR9I CCNGG 2 cut(s) 77, 344
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 108
NciI CCSGG 2 cut(s) 77, 344
NdeI CATATG 1 cut(s) 378
NdeII GATC 3 cut(s) 94, 134, 211
NlaIII CATG 2 cut(s) 75, 248
NlaIV GGNNCC 2 cut(s) 207, 213
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 378
PkrI GCNGC 4 cut(s) 165, 197, 200, 280
PspFI CCCAGC 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 207, 213
PstNI CAGNNNCTG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 201
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 4 cut(s) 164, 196, 199, 279
Sau3AI GATC 3 cut(s) 94, 134, 211
ScrFI CCNGG 2 cut(s) 77, 344
SetI ASST 4 cut(s) 85, 117, 203, 318
SfaNI GCATC 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 1 cut(s) 163
StyD4I CCNGG 2 cut(s) 75, 342
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 182
TatI WGTACW 1 cut(s) 325
TauI GCSGC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 195, 198, 278
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 60, 261
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.