RchiOBHm_Chr6g0254401

Indole-3-acetic acid-amido synthetase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013876
Physical Location & Seq
Reverse (-)
9439099 .. 9442649
3551 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1791 bp
ATGGCAGTTGACTCGTCCCTTCCTTCTCCCCTCGGGCCACCGGCCTGTGAGAAAGACGCCAAGGCCTTGCAATACATCGAACAAACCACCCGAAACGCCGACGCCGTCCAGGAGACGGTGCTCGCCGAGATTCTCAGCCGAAACGCCGAGACCGAATACCTCCGACGCTACAAGCTCGGCGGCGCCACTGACCGTAAATCCTTTAAATCCAAGCTTCCAGTCATCACTTACGAGGATGTCCAGCCGGAAATCCAAAGGATCGCCAATGGAGATCGCTCCCCTATCCTCTCGGCTCATCCCATCTCTGAGTTTCTCACCAGCTCTGGTACTTCAGCGGGTGAGAGGAAGCTGATGCCAACGATTCAGGAGGAGTTGGATCGTCGTCAATCACTCTACAACCTCCTCATGCCAGTCATGAACCTTTGTGTGCCTGGTTTGGACAAAGGAAAGGGCTTGTACTTTCTGTTCGTCAAGTCCGAATCAAAGACTCCGGGCGGACTCTTGGCCCGACCCGTTTTGACCAGCTACTACAAAAGCGAGCATTTCAAGACTCGCCCTTACGATCCCTACAATGTCTACACCAGCCCCAACGAGGCCATCCTCTGCCCCGACTCGTTTCAATCCATGTACACTCAAATGCTCTGTGGCCTCCTCGAGCGCCACCAAGTCCTCCGCCTCGGCGCCGTTTTCGCCTCCGGTCTCCTCCGCGCCATCCACTTCCTCCAGCTCAACTGGCAGCAACTCGCCGCCGACATCCGCACCGGAACACTCAACCCCAAAATTACCGACCCGGAGTTGAGGGAATGCATGGAGCGGAAACTGAAACCCGAGCCTGAACTTGCTGAGTTCGTTGCCGAACAATGCGGCGAGGAGAATTGGCAGGGAATCATAACCCGAATTTGGCCCAGTACAAAATATCTCGACGTCATCGTCACCGGAGCTATGGCCCAGTATATTCCGACTTTGGATTACTACAGCGGCGGCTTACCCATGGCCTGCACCATGTACGCTTCATCCGAGTGTTACTTCGGACTCAACCTGAACCCCATGTGCAGACCTTCACAAGTTTCATACACAATTATGCCAAACATGGCTTACTTCGAGTTCCTCCCCTACGAGCCCAACTCAGTGAGTTTTGACCCGACCCGACTCGTTGACCTGGTCGACGTGGTGGTCGGAAAAGAATACGAGCTCGTTATTACCACTTACGCCGGACTCTACCGCTACCGCGTCGGCGACATTCTCCGGGTCACCGGGTTCCACAACTCGGCGCCGCAGTTCCACTTCGTGCGGCGGAAGAACGTCCTGCTCAGCATTGACTCCGACAAGACCGACGAGGCGGAGCTCCAGCTCGCCGTCGACAACGCCACCAAGCTCGTCCTGGAGAAGCTCAACGCCAGCGTGGTGGAGTACACCAGCTTCGCCGACACCAAGACCATACCGGGCCACTACGTCATCTACTGGGAGCTTCTAGTCAAGGACTCGGCCGAGTCGCCCAGCTCGGAATCGCTGAGTCAGTGCTGCTTGGCCATGGAGGAATCGCTCAACTCGGTTTACCGGCAGTGCCGGGTGGCGGACAACTCGATCGGGCCGTTGGAGATTCGTGTGGTGAAGAGCGGCACGTTCGAGGAGTTGATGGACTACGCGATCTCGAGAGGCGCGTCGATTAACCAGTATAAGGTGCCGCGGTGTGTGAATTTTACCCCGATAATGGAGTTACTGGACTCCAGGGTGGTTTCCAAGCATTTTAGCCCTTCTTTACCGCATTGGACCCCGGAAAGGAGACGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
GH3

Protein Analysis

596

Amino Acids

67.29

Weight (kDa)

5.68

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH3 PF03321 23 - 331 1.2e-121 GH3 family N-terminal domain
GH3_M PF23571 358 - 432 2.8e-30 GH3 family central domain
GH3_C PF23572 448 - 567 5.7e-40 GH3 family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14960
fragaria_vesca FvH4_2g04750
malus_domestica MD05G1092300.v1.1 MD05G1092900.v1.1
prunus_persica Prupe.8G137900_v2.0.a1
pyrus_communis pycom05g09190 pycom05g09210
rosa_chinensis RchiOBHm_Chr6g0254401
rosa_laevigata RLG00000014915
rosa_multiflora Rmu_ssc0000481.1_g000001
rosa_roxburghii Rroxscaffold_7G00210830
rosa_rugosa Rorug05G0552100
rosa_samantha Rh6AG069100 Rh6BG061700 Rh6CG061900 Rh6DG058900
rosa_wichuraiana Rw6G006070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 929, 1172
AatII GACGTC 1 cut(s) 927
AccB1I GGYRCC 4 cut(s) 182, 680, 1270, 1681
AccBSI CCGCTC 2 cut(s) 814, 1617
AccI GTMKAC 3 cut(s) 576, 1164, 1359
AccII CGCG 5 cut(s) 708, 1230, 1646, 1661, 1687
AclWI GGATC 3 cut(s) 266, 384, 557
AcoI YGGCCR 2 cut(s) 1485, 1527
AcsI RAATTY 2 cut(s) 897, 1696
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 6 cut(s) 57, 102, 183, 681, 924, 1271
AdeI CACNNNGTG 1 cut(s) 1288
AfaI GTAC 6 cut(s) 328, 458, 629, 910, 1007, 1412
AfiI CCNNNNNNNGG 8 cut(s) 115, 592, 900, 1267, 1573, 1678, 1711, 1779
AgsI TTSAA 2 cut(s) 547, 620
AjiI CACGTC 1 cut(s) 1168
AjnI CCWGG 5 cut(s) 108, 430, 1158, 1380, 1727
Alw21I GWGCWC 3 cut(s) 123, 1194, 1347
Alw26I GTCTC 4 cut(s) 107, 143, 704, 1777
AlwI GGATC 3 cut(s) 266, 384, 557
Ama87I CYCGRG 4 cut(s) 32, 653, 827, 1651
ApeKI GCWGC 2 cut(s) 736, 1521
ApoI RAATTY 2 cut(s) 897, 1696
AspLEI GCGC 6 cut(s) 185, 660, 683, 710, 1273, 1661
AspS9I GGNCC 7 cut(s) 35, 505, 903, 946, 1444, 1589, 1770
AsuC2I CCSGG 7 cut(s) 492, 791, 1247, 1255, 1443, 1568, 1775
AsuHPI GGTGA 5 cut(s) 307, 350, 925, 1243, 1621
AvaI CYCGRG 4 cut(s) 32, 653, 827, 1651
AvaII GGWCC 1 cut(s) 1770
BalI TGGCCA 1 cut(s) 1529
BanI GGYRCC 4 cut(s) 182, 680, 1270, 1681
BanII GRGCYC 3 cut(s) 1122, 1194, 1347
BarI GAAGNNNNNNTAC 2 cut(s) 1403, 1435
Bbv12I GWGCWC 3 cut(s) 123, 1194, 1347
BbvI GCAGC 2 cut(s) 748, 1508
BccI CCATC 4 cut(s) 308, 605, 719, 1630
BceAI ACGGC 4 cut(s) 89, 668, 1340, 1576
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 5 cut(s) 110, 432, 1160, 1382, 1729
BcnI CCSGG 7 cut(s) 492, 791, 1247, 1255, 1443, 1568, 1775
BcoDI GTCTC 4 cut(s) 107, 143, 704, 1777
BfaI CTAG 1 cut(s) 1472
BfmI CTRYAG 1 cut(s) 973
BfoI RGCGCY 4 cut(s) 186, 661, 684, 1274
BlpI GCTNAGC 1 cut(s) 1310
Bme18I GGWCC 1 cut(s) 1770
BmeT110I CYCGRG 4 cut(s) 32, 653, 827, 1651
BmgBI CACGTC 1 cut(s) 1168
BmgT120I GGNCC 7 cut(s) 35, 505, 903, 946, 1444, 1589, 1770
BmiI GGNNCC 6 cut(s) 184, 682, 1259, 1272, 1683, 1772
BmrI ACTGGG 3 cut(s) 900, 943, 1471
BmsI GCATC 1 cut(s) 342
BmuI ACTGGG 3 cut(s) 900, 943, 1471
BplI GAGNNNNNCTC 2 cut(s) 1109, 1141
BpmI CTGGAG 4 cut(s) 707, 1331, 1403, 1711
Bpu1102I GCTNAGC 1 cut(s) 1310
BpuMI CCSGG 7 cut(s) 492, 791, 1247, 1255, 1443, 1568, 1775
BsaHI GRCGYC 6 cut(s) 57, 102, 183, 681, 924, 1271
BsaI GGTCTC 2 cut(s) 143, 704
BsaJI CCNNGG 8 cut(s) 31, 60, 676, 990, 1530, 1685, 1728, 1773
BsaWI WCCGGW 3 cut(s) 695, 761, 935
Bsc4I CCNNNNNNNGG 8 cut(s) 115, 592, 900, 1267, 1573, 1678, 1711, 1779
Bse118I RCCGGY 2 cut(s) 40, 1557
Bse1I ACTGG 8 cut(s) 218, 410, 737, 906, 949, 1466, 1672, 1725
BseBI CCWGG 5 cut(s) 110, 432, 1160, 1382, 1729
BseDI CCNNGG 8 cut(s) 31, 60, 676, 990, 1530, 1685, 1728, 1773
BseGI GGATG 6 cut(s) 241, 295, 597, 711, 753, 1013
BseLI CCNNNNNNNGG 8 cut(s) 115, 592, 900, 1267, 1573, 1678, 1711, 1779
BseMII CTCAG 6 cut(s) 148, 297, 834, 1140, 1324, 1502
BseNI ACTGG 8 cut(s) 218, 410, 737, 906, 949, 1466, 1672, 1725
BseRI GAGGAG 6 cut(s) 383, 392, 641, 692, 884, 1643
BseX3I CGGCCG 1 cut(s) 1485
BseXI GCAGC 2 cut(s) 748, 1508
BseYI CCCAGC 1 cut(s) 1496
BsgI GTGCAG 2 cut(s) 982, 1072
Bsh1236I CGCG 5 cut(s) 708, 1230, 1646, 1661, 1687
Bsh1285I CGRYCG 2 cut(s) 1488, 1587
BshNI GGYRCC 4 cut(s) 182, 680, 1270, 1681
BsiEI CGRYCG 2 cut(s) 1488, 1587
BsiHKAI GWGCWC 3 cut(s) 123, 1194, 1347
BsiHKCI CYCGRG 4 cut(s) 32, 653, 827, 1651
BslI CCNNNNNNNGG 8 cut(s) 115, 592, 900, 1267, 1573, 1678, 1711, 1779
BsmAI GTCTC 4 cut(s) 107, 143, 704, 1777
BsmBI CGTCTC 2 cut(s) 107, 1777
BsmI GAATGC 1 cut(s) 809
Bso31I GGTCTC 2 cut(s) 143, 704
BsoBI CYCGRG 4 cut(s) 32, 653, 827, 1651
Bsp1286I GDGCHC 4 cut(s) 123, 1122, 1194, 1347
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
Bsp1720I GCTNAGC 1 cut(s) 1310
Bsp19I CCATGG 2 cut(s) 990, 1530
BspCNI CTCAG 6 cut(s) 147, 298, 835, 1139, 1323, 1503
BspFNI CGCG 5 cut(s) 708, 1230, 1646, 1661, 1687
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 6 cut(s) 184, 682, 1259, 1272, 1683, 1772
BspPI GGATC 3 cut(s) 266, 384, 557
BspQI GCTCTTC 1 cut(s) 1607
BspT107I GGYRCC 4 cut(s) 182, 680, 1270, 1681
BspTNI GGTCTC 2 cut(s) 143, 704
BsrBI CCGCTC 2 cut(s) 814, 1617
BsrFI RCCGGY 2 cut(s) 40, 1557
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 8 cut(s) 218, 410, 737, 906, 949, 1466, 1672, 1725
BssAI RCCGGY 2 cut(s) 40, 1557
BssECI CCNNGG 8 cut(s) 31, 60, 676, 990, 1530, 1685, 1728, 1773
BssMI GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
BssNI GRCGYC 6 cut(s) 57, 102, 183, 681, 924, 1271
BssT1I CCWWGG 3 cut(s) 60, 990, 1530
Bst2UI CCWGG 5 cut(s) 110, 432, 1160, 1382, 1729
Bst4CI ACNGT 3 cut(s) 118, 194, 1788
Bst6I CTCTTC 1 cut(s) 1607
BstACI GRCGYC 6 cut(s) 57, 102, 183, 681, 924, 1271
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 5 cut(s) 123, 539, 997, 1353, 1399
BstDEI CTNAG 6 cut(s) 134, 306, 843, 1126, 1310, 1511
BstDSI CCRYGG 3 cut(s) 990, 1530, 1685
BstEII GGTNACC 1 cut(s) 1249
BstF5I GGATG 6 cut(s) 241, 295, 597, 711, 753, 1013
BstFNI CGCG 5 cut(s) 708, 1230, 1646, 1661, 1687
BstH2I RGCGCY 4 cut(s) 186, 661, 684, 1274
BstHHI GCGC 6 cut(s) 185, 660, 683, 710, 1273, 1661
BstKTI GATC 6 cut(s) 261, 274, 379, 565, 1587, 1650
BstMAI GTCTC 4 cut(s) 107, 143, 704, 1777
BstMBI GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
BstMCI CGRYCG 2 cut(s) 1488, 1587
BstMWI GCNNNNNNNGC 2 cut(s) 689, 733
BstNI CCWGG 5 cut(s) 110, 432, 1160, 1382, 1729
BstPI GGTNACC 1 cut(s) 1249
BstSFI CTRYAG 1 cut(s) 973
BstUI CGCG 5 cut(s) 708, 1230, 1646, 1661, 1687
BstV1I GCAGC 2 cut(s) 748, 1508
BstXI CCANNNNNNTGG 1 cut(s) 1405
BstZI CGGCCG 1 cut(s) 1485
BtgI CCRYGG 3 cut(s) 990, 1530, 1685
BtrI CACGTC 1 cut(s) 1168
BtsCI GGATG 6 cut(s) 241, 295, 597, 711, 753, 1013
BtsI GCAGTG 1 cut(s) 1568
BtsIMutI CAGTG 4 cut(s) 186, 1134, 1523, 1568
Cac8I GCNNGC 5 cut(s) 123, 539, 997, 1353, 1399
CciI TCATGA 1 cut(s) 414
CfoI GCGC 6 cut(s) 185, 660, 683, 710, 1273, 1661
Cfr10I RCCGGY 2 cut(s) 40, 1557
Cfr13I GGNCC 7 cut(s) 35, 505, 903, 946, 1444, 1589, 1770
Cfr42I CCGCGG 1 cut(s) 1688
CseI GACGC 5 cut(s) 65, 110, 174, 1219, 1650
CsiI ACCWGGT 1 cut(s) 1158
Csp6I GTAC 6 cut(s) 327, 457, 628, 909, 1006, 1411
CviAII CATG 9 cut(s) 406, 415, 625, 808, 991, 1003, 1048, 1090, 1531
CviQI GTAC 6 cut(s) 327, 457, 628, 909, 1006, 1411
DdeI CTNAG 6 cut(s) 134, 306, 843, 1126, 1310, 1511
DinI GGCGCC 3 cut(s) 184, 682, 1272
DpnI GATC 6 cut(s) 260, 273, 378, 564, 1586, 1649
DpnII GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
DraI TTTAAA 1 cut(s) 205
DraIII CACNNNGTG 1 cut(s) 1288
DrdI GACNNNNNNGTC 2 cut(s) 929, 1172
DseDI GACNNNNNNGTC 2 cut(s) 929, 1172
EaeI YGGCCR 2 cut(s) 1485, 1527
EagI CGGCCG 1 cut(s) 1485
Eam1104I CTCTTC 1 cut(s) 1607
EarI CTCTTC 1 cut(s) 1607
EciI GGCGGA 5 cut(s) 510, 662, 1309, 1355, 1589
Ecl136II GAGCTC 2 cut(s) 1192, 1345
EclXI CGGCCG 1 cut(s) 1485
Eco130I CCWWGG 3 cut(s) 60, 990, 1530
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 3 cut(s) 1122, 1194, 1347
Eco31I GGTCTC 2 cut(s) 143, 704
Eco47I GGWCC 1 cut(s) 1770
Eco52I CGGCCG 1 cut(s) 1485
Eco53kI GAGCTC 2 cut(s) 1192, 1345
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 4 cut(s) 32, 653, 827, 1651
Eco91I GGTNACC 1 cut(s) 1249
EcoICRI GAGCTC 2 cut(s) 1192, 1345
EcoO65I GGTNACC 1 cut(s) 1249
EcoRII CCWGG 5 cut(s) 108, 430, 1158, 1380, 1727
EcoT14I CCWWGG 3 cut(s) 60, 990, 1530
EcoT22I ATGCAT 1 cut(s) 809
EcoT38I GRGCYC 3 cut(s) 1122, 1194, 1347
EgeI GGCGCC 3 cut(s) 184, 682, 1272
EheI GGCGCC 3 cut(s) 184, 682, 1272
ErhI CCWWGG 3 cut(s) 60, 990, 1530
Esp3I CGTCTC 2 cut(s) 107, 1777
FaeI CATG 9 cut(s) 409, 418, 628, 811, 994, 1006, 1051, 1093, 1534
FatI CATG 9 cut(s) 405, 414, 624, 807, 990, 1002, 1047, 1089, 1530
FauI CCCGC 1 cut(s) 328
FblI GTMKAC 3 cut(s) 576, 1164, 1359
FokI GGATG 6 cut(s) 248, 282, 584, 698, 740, 1000
FriOI GRGCYC 3 cut(s) 1122, 1194, 1347
FspBI CTAG 1 cut(s) 1472
GlaI GCGC 6 cut(s) 184, 659, 682, 709, 1272, 1660
GsaI CCCAGC 1 cut(s) 1500
GsuI CTGGAG 4 cut(s) 707, 1331, 1403, 1711
HaeII RGCGCY 4 cut(s) 186, 661, 684, 1274
HgaI GACGC 5 cut(s) 65, 110, 174, 1219, 1650
HhaI GCGC 6 cut(s) 185, 660, 683, 710, 1273, 1661
Hin1I GRCGYC 6 cut(s) 57, 102, 183, 681, 924, 1271
Hin1II CATG 9 cut(s) 409, 418, 628, 811, 994, 1006, 1051, 1093, 1534
Hin6I GCGC 6 cut(s) 183, 658, 681, 708, 1271, 1659
HinP1I GCGC 6 cut(s) 183, 658, 681, 708, 1271, 1659
HincII GTYRAC 4 cut(s) 10, 1156, 1165, 1360
HindII GTYRAC 4 cut(s) 10, 1156, 1165, 1360
HindIII AAGCTT 1 cut(s) 212
HphI GGTGA 5 cut(s) 307, 350, 925, 1243, 1621
Hpy166II GTNNAC 8 cut(s) 10, 577, 630, 1156, 1165, 1360, 1413, 1555
Hpy188I TCNGA 9 cut(s) 164, 307, 478, 960, 1018, 1031, 1178, 1324, 1504
Hpy188III TCNNGA 6 cut(s) 365, 415, 547, 920, 1651, 1653
Hpy8I GTNNAC 8 cut(s) 10, 577, 630, 1156, 1165, 1360, 1413, 1555
Hpy99I CGWCG 9 cut(s) 104, 168, 384, 926, 1169, 1235, 1337, 1361, 1666
HpyAV CCTTC 4 cut(s) 29, 33, 1068, 1764
HpyCH4III ACNGT 3 cut(s) 118, 194, 1788
HpyCH4IV ACGT 5 cut(s) 924, 1167, 1302, 1452, 1622
HpyCH4V TGCA 4 cut(s) 70, 807, 999, 1053
HpyF10VI GCNNNNNNNGC 2 cut(s) 689, 733
HpyF3I CTNAG 6 cut(s) 134, 306, 843, 1126, 1310, 1511
HpySE526I ACGT 5 cut(s) 924, 1167, 1302, 1452, 1622
Hsp92I GRCGYC 6 cut(s) 57, 102, 183, 681, 924, 1271
Hsp92II CATG 9 cut(s) 409, 418, 628, 811, 994, 1006, 1051, 1093, 1534
HspAI GCGC 6 cut(s) 183, 658, 681, 708, 1271, 1659
KasI GGCGCC 3 cut(s) 182, 680, 1270
KspI CCGCGG 1 cut(s) 1688
Kzo9I GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
LguI GCTCTTC 1 cut(s) 1607
LmnI GCTCC 6 cut(s) 281, 811, 938, 1342, 1350, 1465
Lsp1109I GCAGC 2 cut(s) 748, 1508
LweI GCATC 1 cut(s) 342
MabI ACCWGGT 1 cut(s) 1158
MaeI CTAG 1 cut(s) 1472
MaeII ACGT 5 cut(s) 924, 1167, 1302, 1452, 1622
MaeIII GTNAC 4 cut(s) 931, 1022, 1249, 1716
MalI GATC 6 cut(s) 260, 273, 378, 564, 1586, 1649
MbiI CCGCTC 2 cut(s) 814, 1617
MboI GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
MboII GAAGA 2 cut(s) 1309, 1624
MhlI GDGCHC 4 cut(s) 123, 1122, 1194, 1347
MlsI TGGCCA 1 cut(s) 1529
MluCI AATT 5 cut(s) 780, 874, 897, 1077, 1696
MluNI TGGCCA 1 cut(s) 1529
Mly113I GGCGCC 3 cut(s) 183, 681, 1271
MmeI TCCRAC 6 cut(s) 187, 354, 983, 1156, 1347, 1575
Mox20I TGGCCA 1 cut(s) 1529
Mph1103I ATGCAT 1 cut(s) 809
MscI TGGCCA 1 cut(s) 1529
MseI TTAA 2 cut(s) 204, 1668
MslI CAYNNNNRTG 3 cut(s) 635, 1018, 1079
Msp20I TGGCCA 1 cut(s) 1529
MspA1I CMGCKG 3 cut(s) 335, 978, 1687
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 5 cut(s) 110, 432, 1160, 1382, 1729
MvnI CGCG 5 cut(s) 708, 1230, 1646, 1661, 1687
MwoI GCNNNNNNNGC 2 cut(s) 689, 733
NarI GGCGCC 3 cut(s) 183, 681, 1271
NciI CCSGG 7 cut(s) 492, 791, 1247, 1255, 1443, 1568, 1775
NcoI CCATGG 2 cut(s) 990, 1530
NdeII GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
NlaIII CATG 9 cut(s) 409, 418, 628, 811, 994, 1006, 1051, 1093, 1534
NlaIV GGNNCC 6 cut(s) 184, 682, 1259, 1272, 1683, 1772
NmeAIII GCCGAG 8 cut(s) 151, 156, 172, 269, 657, 1247, 1463, 1513
NmuCI GTSAC 2 cut(s) 931, 1249
NsiI ATGCAT 1 cut(s) 809
PaeR7I CTCGAG 2 cut(s) 653, 1651
PagI TCATGA 1 cut(s) 414
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 1607
PcsI WCGNNNNNNNCGW 7 cut(s) 102, 150, 474, 927, 1014, 1589, 1658
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 7 cut(s) 130, 361, 479, 885, 1505, 1538, 1600
PflFI GACNNNGTC 2 cut(s) 104, 1160
PfoI TCCNGGA 2 cut(s) 108, 1380
Ple19I CGATCG 1 cut(s) 1587
PluTI GGCGCC 3 cut(s) 186, 684, 1274
Psp124BI GAGCTC 2 cut(s) 1194, 1347
Psp6I CCWGG 5 cut(s) 108, 430, 1158, 1380, 1727
PspEI GGTNACC 1 cut(s) 1249
PspFI CCCAGC 1 cut(s) 1496
PspGI CCWGG 5 cut(s) 108, 430, 1158, 1380, 1727
PspN4I GGNNCC 6 cut(s) 184, 682, 1259, 1272, 1683, 1772
PspPI GGNCC 7 cut(s) 35, 505, 903, 946, 1444, 1589, 1770
PspXI VCTCGAGB 1 cut(s) 653
PsrI GAACNNNNNNTAC 2 cut(s) 449, 481
PsyI GACNNNGTC 2 cut(s) 104, 1160
PvuI CGATCG 1 cut(s) 1587
RsaI GTAC 6 cut(s) 328, 458, 629, 910, 1007, 1412
RsaNI GTAC 6 cut(s) 327, 457, 628, 909, 1006, 1411
RseI CAYNNNNRTG 3 cut(s) 635, 1018, 1079
SacI GAGCTC 2 cut(s) 1194, 1347
SacII CCGCGG 1 cut(s) 1688
SalI GTCGAC 2 cut(s) 1163, 1358
SapI GCTCTTC 1 cut(s) 1607
SaqAI TTAA 2 cut(s) 204, 1668
Sau3AI GATC 6 cut(s) 258, 271, 376, 562, 1584, 1647
Sau96I GGNCC 7 cut(s) 35, 505, 903, 946, 1444, 1589, 1770
SduI GDGCHC 4 cut(s) 123, 1122, 1194, 1347
SexAI ACCWGGT 1 cut(s) 1158
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 1 cut(s) 973
SfoI GGCGCC 3 cut(s) 184, 682, 1272
Sfr274I CTCGAG 2 cut(s) 653, 1651
Sfr303I CCGCGG 1 cut(s) 1688
SgrBI CCGCGG 1 cut(s) 1688
SinI GGWCC 1 cut(s) 1770
SlaI CTCGAG 2 cut(s) 653, 1651
SmiMI CAYNNNNRTG 3 cut(s) 635, 1018, 1079
SmlI CTYRAG 2 cut(s) 653, 1651
SmoI CTYRAG 2 cut(s) 653, 1651
Sse9I AATT 5 cut(s) 780, 874, 897, 1077, 1696
SseBI AGGCCT 1 cut(s) 65
SspDI GGCGCC 3 cut(s) 182, 680, 1270
SspMI CTAG 1 cut(s) 1472
SstI GAGCTC 2 cut(s) 1194, 1347
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 3 cut(s) 60, 990, 1530
TaaI ACNGT 3 cut(s) 118, 194, 1788
TaiI ACGT 5 cut(s) 927, 1170, 1305, 1455, 1625
TaqII GACCGA 2 cut(s) 167, 1346
TasI AATT 5 cut(s) 780, 874, 897, 1077, 1696
TatI WGTACW 4 cut(s) 456, 627, 908, 1410
TauI GCSGC 9 cut(s) 183, 749, 867, 981, 984, 1276, 1294, 1620, 1687
TfiI GAWTC 7 cut(s) 130, 361, 479, 885, 1505, 1538, 1600
Tru1I TTAA 2 cut(s) 204, 1668
Tru9I TTAA 2 cut(s) 204, 1668
TscAI CASTG 4 cut(s) 193, 1134, 1523, 1568
TseFI GTSAC 2 cut(s) 931, 1249
TseI GCWGC 2 cut(s) 736, 1521
Tsp45I GTSAC 2 cut(s) 931, 1249
TspDTI ATGAA 3 cut(s) 431, 1002, 1059
TspRI CASTG 4 cut(s) 193, 1134, 1523, 1568
Tth111I GACNNNGTC 2 cut(s) 104, 1160
VpaK11BI GGWCC 1 cut(s) 1770
XapI RAATTY 2 cut(s) 897, 1696
XcmI CCANNNNNNNNNTGG 1 cut(s) 1378
XhoI CTCGAG 2 cut(s) 653, 1651
XmiI GTMKAC 3 cut(s) 576, 1164, 1359
XspI CTAG 1 cut(s) 1472
ZraI GACGTC 1 cut(s) 925
Zsp2I ATGCAT 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.