RchiOBHm_Chr6g0258681

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015532
Physical Location & Seq
Reverse (-)
14039827 .. 14041050
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGGATTCAAACAACAATGAAATAATCCATGACTTCCCACCTTTCTTCAAAGTCTTCAAAGATGGTCGCATAGAGAGGTACGTGCGACCCCGTGGCGACGTTCCGGCGGGACCCGACCCAACAACCGGAGTCCAATCCAAAGACGTGGTGGTCTCGCCTGAAACCGGGGTAAAGGCTTGTATTTTGATCCCCAAAATCAACGGCGAAGGTCAGAAGTTGCCCCTCTTAGTCAATTACCACGGTGGAGGCTTCTGTCTGGGATCAGCCTTTGAAGAAATTTTTAAGAAGTTCCTTTCATCGCTAGTCCTCAAAGCCAACGTCATTGTAGTTTCTGTTGACTACAGGCTAGCCCCAGAGCATCCTCTACCAATTGCCTACGACGATTCCTCAGCCGCTTTGCACTGGATCGCTTCCCACTCTGACGGAGAAGGGCCTGAAGCTTGGCTCAACGAGTATGCAGATCTGGACAGGGTTTTCTTGGGCGGTGAGAGTGCTGGAGCCAACATCGCTCATTATGTTGCGGTCCAAGCTGGGGTTAATGTTCCAGTGGGGTTGAACATTGTTGGCTTAGTTATGTTGCACCCCTTCTTTGGAGGTAAAGAGTGTGACAAGATGTATAAGTTTTTAAGCTCAACGAGTTCAGGGTGCGATGATGATCCGAAACTGAACCCGGCAGCGGATCCGGACTTGGTGAAATTGCCATGTAGGAAGGTGTTGGTTTGTGTTGCGGAGAAAGATTGGCTGAGAGATAGAGGAGTGAGCTACTATGAGACTCTAGAGAAACTGAAAGGGGAAGGGTTTGCGGAGTTGTTTGAGACAAAAGGAGAGGATCATTGCTTTTATTTGTTCAACCCCAATGCTGACAAGGCTGGCCATCTGCTGCAAAAAGTGGTTGATTTCTTTAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

303

Amino Acids

33.28

Weight (kDa)

5.21

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 62 - 172 1.6e-06 Carboxylesterase family
BD-FAE PF20434 69 - 178 7.3e-12 BD-FAE
Abhydrolase_3 PF07859 76 - 281 5.6e-44 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 682
AciI CCGC 7 cut(s) 107, 393, 483, 521, 677, 728, 803
AclWI GGATC 7 cut(s) 181, 268, 413, 650, 674, 687, 837
AcoI YGGCCR 1 cut(s) 871
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 125, 164, 532, 590, 676
AgsI TTSAA 6 cut(s) 9, 49, 58, 272, 556, 850
AjiI CACGTC 1 cut(s) 145
AluBI AGCT 4 cut(s) 440, 530, 630, 762
AluI AGCT 4 cut(s) 440, 530, 630, 762
Alw26I GTCTC 3 cut(s) 157, 764, 809
AlwI GGATC 7 cut(s) 181, 268, 413, 650, 674, 687, 837
Aor13HI TCCGGA 1 cut(s) 682
AoxI GGCC 2 cut(s) 431, 871
ApeKI GCWGC 2 cut(s) 674, 880
ApoI RAATTY 1 cut(s) 276
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
AspS9I GGNCC 3 cut(s) 110, 431, 523
AsuC2I CCSGG 2 cut(s) 166, 671
AsuHPI GGTGA 2 cut(s) 497, 703
AsuNHI GCTAGC 1 cut(s) 346
AvaII GGWCC 2 cut(s) 110, 523
BalI TGGCCA 1 cut(s) 873
BamHI GGATCC 1 cut(s) 679
BbsI GAAGAC 1 cut(s) 46
BbvCI CCTCAGC 1 cut(s) 388
BbvI GCAGC 2 cut(s) 686, 867
BccI CCATC 2 cut(s) 56, 882
BceAI ACGGC 1 cut(s) 217
BcnI CCSGG 2 cut(s) 166, 671
BcoDI GTCTC 3 cut(s) 157, 764, 809
BfaI CTAG 3 cut(s) 302, 347, 776
BfmI CTRYAG 1 cut(s) 340
BglII AGATCT 1 cut(s) 460
BisI GCNGC 3 cut(s) 393, 675, 881
BlsI GCNGC 3 cut(s) 394, 676, 882
Bme1390I CCNGG 2 cut(s) 166, 671
Bme18I GGWCC 2 cut(s) 110, 523
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 3 cut(s) 110, 431, 523
BmiI GGNNCC 4 cut(s) 111, 112, 499, 681
BmrFI CCNGG 2 cut(s) 166, 671
BmsI GCATC 1 cut(s) 367
BmtI GCTAGC 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 388
BpuMI CCSGG 2 cut(s) 166, 671
BsaAI YACGTR 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 3 cut(s) 91, 165, 238
BsaWI WCCGGW 2 cut(s) 125, 682
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 164, 532, 590, 676
Bse1I ACTGG 2 cut(s) 407, 545
Bse3DI GCAATG 1 cut(s) 832
Bse8I GATNNNNATC 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 682
BseDI CCNNGG 3 cut(s) 91, 165, 238
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 5 cut(s) 125, 164, 532, 590, 676
BseMI GCAATG 1 cut(s) 832
BseMII CTCAG 2 cut(s) 402, 734
BseNI ACTGG 2 cut(s) 407, 545
BseRI GAGGAG 1 cut(s) 768
BseXI GCAGC 2 cut(s) 686, 867
BseYI CCCAGC 1 cut(s) 530
BshFI GGCC 2 cut(s) 433, 873
BsiSI CCGG 5 cut(s) 104, 126, 165, 671, 683
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 5 cut(s) 125, 164, 532, 590, 676
BsmAI GTCTC 3 cut(s) 157, 764, 809
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 2 cut(s) 433, 873
Bso31I GGTCTC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 682
Bsp143I GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
BspACI CCGC 7 cut(s) 107, 393, 483, 521, 677, 728, 803
BspANI GGCC 2 cut(s) 433, 873
BspCNI CTCAG 2 cut(s) 401, 735
BspEI TCCGGA 1 cut(s) 682
BspLI GGNNCC 4 cut(s) 111, 112, 499, 681
BspOI GCTAGC 1 cut(s) 350
BspPI GGATC 7 cut(s) 181, 268, 413, 650, 674, 687, 837
BspTNI GGTCTC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 832
BsrI ACTGG 2 cut(s) 407, 545
BssECI CCNNGG 3 cut(s) 91, 165, 238
BssMI GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
Bst4CI ACNGT 1 cut(s) 242
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 2 cut(s) 348, 871
BstDEI CTNAG 4 cut(s) 226, 388, 568, 743
BstDSI CCRYGG 2 cut(s) 91, 238
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 7 cut(s) 189, 263, 408, 463, 658, 682, 832
BstMAI GTCTC 3 cut(s) 157, 764, 809
BstMBI GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
BstMWI GCNNNNNNNGC 3 cut(s) 506, 527, 866
BstSCI CCNGG 2 cut(s) 164, 669
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 686, 867
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 460, 679
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 2 cut(s) 460, 679
BsuRI GGCC 2 cut(s) 433, 873
BtgI CCRYGG 2 cut(s) 91, 238
BtgZI GCGATG 3 cut(s) 282, 490, 663
BtrI CACGTC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 400, 552
Cac8I GCNNGC 2 cut(s) 348, 871
Cfr13I GGNCC 3 cut(s) 110, 431, 523
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 29, 702
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 4 cut(s) 226, 388, 568, 743
DpnI GATC 7 cut(s) 188, 262, 407, 462, 657, 681, 831
DpnII GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 871
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 110, 523
Eco57I CTGAAG 1 cut(s) 456
EcoO109I RGGNCCY 2 cut(s) 110, 431
FaeI CATG 2 cut(s) 32, 705
FaiI YATR 8 cut(s) 30, 71, 456, 516, 575, 618, 703, 768
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 28, 701
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 393, 675, 881
FokI GGATG 1 cut(s) 345
Fsp4HI GCNGC 3 cut(s) 393, 675, 881
FspBI CTAG 3 cut(s) 302, 347, 776
GluI GCNGC 3 cut(s) 393, 675, 881
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 2 cut(s) 433, 873
HapII CCGG 5 cut(s) 104, 126, 165, 671, 683
Hin1II CATG 2 cut(s) 32, 705
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 4 cut(s) 5, 129, 383, 772
HpaII CCGG 5 cut(s) 104, 126, 165, 671, 683
HphI GGTGA 2 cut(s) 497, 703
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 4 cut(s) 213, 421, 660, 911
Hpy188III TCNNGA 3 cut(s) 464, 683, 776
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 101, 383
HpyAV CCTTC 5 cut(s) 200, 422, 595, 703, 788
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 4 cut(s) 81, 99, 144, 318
HpyCH4V TGCA 4 cut(s) 400, 458, 580, 883
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 527, 866
HpyF3I CTNAG 4 cut(s) 226, 388, 568, 743
HpySE526I ACGT 4 cut(s) 81, 99, 144, 318
Hsp92II CATG 2 cut(s) 32, 705
KflI GGGWCCC 1 cut(s) 110
Kpn2I TCCGGA 1 cut(s) 682
Kzo9I GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 2 cut(s) 686, 867
LweI GCATC 1 cut(s) 367
MaeI CTAG 3 cut(s) 302, 347, 776
MaeII ACGT 4 cut(s) 81, 99, 144, 318
MaeIII GTNAC 1 cut(s) 605
MalI GATC 7 cut(s) 188, 262, 407, 462, 657, 681, 831
MboI GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
MboII GAAGA 3 cut(s) 37, 46, 284
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 460, 679
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 4 cut(s) 232, 276, 369, 695
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 2 cut(s) 138, 766
MnlI CCTC 9 cut(s) 69, 233, 239, 317, 372, 397, 587, 746, 820
Mox20I TGGCCA 1 cut(s) 873
MroI TCCGGA 1 cut(s) 682
MscI TGGCCA 1 cut(s) 873
MseI TTAA 4 cut(s) 282, 537, 626, 903
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 5 cut(s) 104, 126, 165, 671, 683
MspR9I CCNGG 2 cut(s) 166, 671
MunI CAATTG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 506, 527, 866
NciI CCSGG 2 cut(s) 166, 671
NdeII GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
NheI GCTAGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 32, 705
NlaIV GGNNCC 4 cut(s) 111, 112, 499, 681
NmuCI GTSAC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 5, 383
PkrI GCNGC 3 cut(s) 394, 676, 882
PleI GAGTC 2 cut(s) 137, 766
PpsI GAGTC 2 cut(s) 137, 766
Ppu21I YACGTR 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 111, 112, 499, 681
PspPI GGNCC 3 cut(s) 110, 431, 523
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 2 cut(s) 460, 679
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 4 cut(s) 282, 537, 626, 903
SatI GCNGC 3 cut(s) 393, 675, 881
Sau3AI GATC 7 cut(s) 186, 260, 405, 460, 655, 679, 829
Sau96I GGNCC 3 cut(s) 110, 431, 523
SchI GAGTC 2 cut(s) 138, 766
ScrFI CCNGG 2 cut(s) 166, 671
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 340
SinI GGWCC 2 cut(s) 110, 523
Sse9I AATT 4 cut(s) 232, 276, 369, 695
SsiI CCGC 7 cut(s) 107, 393, 483, 521, 677, 728, 803
SspMI CTAG 3 cut(s) 302, 347, 776
StyD4I CCNGG 2 cut(s) 164, 669
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 4 cut(s) 84, 102, 147, 321
TasI AATT 4 cut(s) 232, 276, 369, 695
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 2 cut(s) 5, 383
Tru1I TTAA 4 cut(s) 282, 537, 626, 903
Tru9I TTAA 4 cut(s) 282, 537, 626, 903
TscAI CASTG 2 cut(s) 407, 552
TseFI GTSAC 1 cut(s) 605
TseI GCWGC 2 cut(s) 674, 880
Tsp45I GTSAC 1 cut(s) 605
TspDTI ATGAA 2 cut(s) 33, 285
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 2 cut(s) 407, 552
VpaK11BI GGWCC 2 cut(s) 110, 523
XapI RAATTY 1 cut(s) 276
XbaI TCTAGA 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 3 cut(s) 302, 347, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.