Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015532

Physical Location & Seq

Genomic Coordinates Forward (+)

55146889 .. 55148296

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014590

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTCATTAAAGCCCCTTTTGATTTTCTTTAAATCCAAATCCACAGCCTACGTACTCATAATCAAACAATATTCCCTAGCATTCTTCTCTATCATATTTCTTCTGGAACTAGATTCAGCTATGGATTCAAACAACAATGAAATAATCCATGACTTCCCACCTTTCTTCAAAGTCTTCAAAGATGGTCGCATAGAGAGGTACATGCGACCCCGTGACGACGTTCCGGCGGGACCCGACCCAACAACCGGAGTCCAATCCAAAGACGTGGTGGTCTCGCCTGAAACCGGAGTAAAGGCTTGTATTTTGATCCCCAAAATCAACGGCGGAGGTCAGAAGTTGCCCGTCTTAGTCCATTACCACGGTGGAGGCTTCTGCCTGGGATCAGCCTTTGAAGAAATTTTTAAGAAGTTCCTTTCATCGCTAGTCCTCAAAGCCAACGTCATTGTAGTTTCTGTTGACTACAGGCTAGCCCCAGAGCATCCTCTACCAATTGCCTACGACGATTCCTCAGCCGCTTTGCACTGGATCGCTTCCCACTCTAACGGAGAAGGGCCTGAAGCTTGGCTCAACGAGTATGCAGATCTGGACAGGGTTTTCTTGGGCGGTGAGAGTGCTGGAGCCAACATCGCTCATTATGTTGCGGTCCAAGCTGGGGTTAATGTTCCAGTGGGGTTGAAAATTGTTGGCTTAGTCATGTTGCACCCCTTCTTTGGAGGTAAAGAGTGTGACAAGATGTATAAGTTTTTAAGCTCAACGAGTTCAGGGTGCGATGATGATCCGAAACTGAACCCGGCAGCGGATCCGGACTTGGTGAAATTGCCATGTAGGAAGGTGTTAGTTTGTGTTGCGGAGAAAGATTGGCTGAGAGATAGAGGAGTGAGCTACTATGAGACTCTAGAGAAACTGAAAGGGGAAGGGTTTGCGGAGTTGTTTGAGACAAAAGGAGAGGATCATTGCTTTTATTTGTTCAACCCCAATGCTGACAAGGCTGGCCATCTGCTGCAAAAAGTGGTTGATTTCTTCAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

344

Amino Acids

37.9

Weight (kDa)

5.71

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	103 - 213	3.1e-07	Carboxylesterase family
BD-FAE	PF20434	110 - 218	1e-11	BD-FAE
Abhydrolase_3	PF07859	116 - 321	3.7e-44	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06620
rosa_chinensis	RchiOBHm_Chr6g0258681
rosa_laevigata	RLG00000014590 RLG00000014598 RLG00000014603
rosa_roxburghii	Rroxscaffold_7G00205900 Rroxscaffold_7G00205950 Rroxscaffold_7G00206010
rosa_rugosa	Rorug05G0582600 Rorug05G0582800 Rorug05G0582800
rosa_samantha	Rh6CG087700 Rh6CG088000 Rh6CG088200
rosa_wichuraiana	Rw6G008590 Rw6G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	8 cut(s)	227, 324, 513, 603, 641, 797, 848, 923
AclWI	GGATC	7 cut(s)	301, 388, 533, 770, 794, 807, 957
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	576
AfaI	GTAC	2 cut(s)	54, 200
AfiI	CCNNNNNNNGG	5 cut(s)	245, 284, 652, 710, 796
AgsI	TTSAA	7 cut(s)	129, 169, 178, 392, 676, 970, 1024
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	5 cut(s)	119, 560, 650, 750, 882
AluI	AGCT	5 cut(s)	119, 560, 650, 750, 882
Alw26I	GTCTC	3 cut(s)	277, 884, 929
AlwI	GGATC	7 cut(s)	301, 388, 533, 770, 794, 807, 957
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	2 cut(s)	551, 991
ApeKI	GCWGC	2 cut(s)	794, 1000
ApoI	RAATTY	1 cut(s)	396
ArsI	GACNNNNNNTTYG	2 cut(s)	423, 455
AspS9I	GGNCC	3 cut(s)	230, 551, 643
AsuC2I	CCSGG	1 cut(s)	791
AsuHPI	GGTGA	2 cut(s)	617, 823
AsuNHI	GCTAGC	1 cut(s)	466
AvaII	GGWCC	2 cut(s)	230, 643
BalI	TGGCCA	1 cut(s)	993
BamHI	GGATCC	1 cut(s)	799
BbsI	GAAGAC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	806, 987
BccI	CCATC	2 cut(s)	176, 1002
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	377
BcnI	CCSGG	1 cut(s)	791
BcoDI	GTCTC	3 cut(s)	277, 884, 929
BfaI	CTAG	5 cut(s)	77, 110, 422, 467, 896
BfmI	CTRYAG	1 cut(s)	460
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	3 cut(s)	513, 795, 1001
BlsI	GCNGC	3 cut(s)	514, 796, 1002
Bme1390I	CCNGG	2 cut(s)	377, 791
Bme18I	GGWCC	2 cut(s)	230, 643
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	3 cut(s)	230, 551, 643
BmiI	GGNNCC	4 cut(s)	231, 232, 619, 801
BmrFI	CCNGG	2 cut(s)	377, 791
BmsI	GCATC	1 cut(s)	487
BmtI	GCTAGC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	166
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	508
BpuMI	CCSGG	1 cut(s)	791
BsaAI	YACGTR	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	774
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	2 cut(s)	358, 376
BsaWI	WCCGGW	3 cut(s)	245, 284, 802
Bsc4I	CCNNNNNNNGG	5 cut(s)	245, 284, 652, 710, 796
Bse1I	ACTGG	2 cut(s)	527, 665
Bse3DI	GCAATG	1 cut(s)	952
Bse8I	GATNNNNATC	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	358, 376
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	774
BseLI	CCNNNNNNNGG	5 cut(s)	245, 284, 652, 710, 796
BseMI	GCAATG	1 cut(s)	952
BseMII	CTCAG	2 cut(s)	522, 854
BseNI	ACTGG	2 cut(s)	527, 665
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	2 cut(s)	806, 987
BseYI	CCCAGC	1 cut(s)	650
BshFI	GGCC	2 cut(s)	553, 993
BsiSI	CCGG	5 cut(s)	224, 246, 285, 791, 803
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	5 cut(s)	245, 284, 652, 710, 796
BsmAI	GTCTC	3 cut(s)	277, 884, 929
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	553, 993
Bso31I	GGTCTC	1 cut(s)	277
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
BspACI	CCGC	8 cut(s)	227, 324, 513, 603, 641, 797, 848, 923
BspANI	GGCC	2 cut(s)	553, 993
BspCNI	CTCAG	2 cut(s)	521, 855
BspEI	TCCGGA	1 cut(s)	802
BspLI	GGNNCC	4 cut(s)	231, 232, 619, 801
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	7 cut(s)	301, 388, 533, 770, 794, 807, 957
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	1 cut(s)	952
BsrI	ACTGG	2 cut(s)	527, 665
BssECI	CCNNGG	2 cut(s)	358, 376
BssMI	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	468, 991
BstDEI	CTNAG	4 cut(s)	346, 508, 688, 863
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	7 cut(s)	309, 383, 528, 583, 778, 802, 952
BstMAI	GTCTC	3 cut(s)	277, 884, 929
BstMBI	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 647, 986
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	375, 789
BstSFI	CTRYAG	1 cut(s)	460
BstSNI	TACGTA	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	806, 987
BstV2I	GAAGAC	1 cut(s)	166
BstX2I	RGATCY	2 cut(s)	580, 799
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	2 cut(s)	580, 799
BsuRI	GGCC	2 cut(s)	553, 993
BtgI	CCRYGG	1 cut(s)	358
BtgZI	GCGATG	3 cut(s)	402, 610, 783
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	520, 672
Cac8I	GCNNGC	2 cut(s)	468, 991
Cfr13I	GGNCC	3 cut(s)	230, 551, 643
Csp6I	GTAC	2 cut(s)	53, 199
CviAII	CATG	4 cut(s)	149, 202, 694, 822
CviQI	GTAC	2 cut(s)	53, 199
DdeI	CTNAG	4 cut(s)	346, 508, 688, 863
DpnI	GATC	7 cut(s)	308, 382, 527, 582, 777, 801, 951
DpnII	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
DraI	TTTAAA	1 cut(s)	31
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	991
EciI	GGCGGA	1 cut(s)	339
Eco105I	TACGTA	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	2 cut(s)	230, 643
Eco57I	CTGAAG	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	230, 551
EcoRII	CCWGG	1 cut(s)	375
FaeI	CATG	4 cut(s)	152, 205, 697, 825
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	148, 201, 693, 821
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	513, 795, 1001
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	3 cut(s)	513, 795, 1001
FspBI	CTAG	5 cut(s)	77, 110, 422, 467, 896
GluI	GCNGC	3 cut(s)	513, 795, 1001
GsaI	CCCAGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	553, 993
HapII	CCGG	5 cut(s)	224, 246, 285, 791, 803
Hin1II	CATG	4 cut(s)	152, 205, 697, 825
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	5 cut(s)	113, 125, 249, 503, 892
HpaII	CCGG	5 cut(s)	224, 246, 285, 791, 803
HphI	GGTGA	2 cut(s)	617, 823
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	3 cut(s)	333, 780, 1031
Hpy188III	TCNNGA	4 cut(s)	104, 584, 803, 896
Hpy8I	GTNNAC	1 cut(s)	457
Hpy99I	CGWCG	2 cut(s)	221, 503
HpyAV	CCTTC	4 cut(s)	542, 715, 823, 908
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	4 cut(s)	51, 219, 264, 438
HpyCH4V	TGCA	4 cut(s)	520, 578, 700, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 647, 986
HpyF3I	CTNAG	4 cut(s)	346, 508, 688, 863
HpySE526I	ACGT	4 cut(s)	51, 219, 264, 438
Hsp92II	CATG	4 cut(s)	152, 205, 697, 825
KflI	GGGWCCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	802
Kzo9I	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	2 cut(s)	806, 987
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	5 cut(s)	77, 110, 422, 467, 896
MaeII	ACGT	4 cut(s)	51, 219, 264, 438
MaeIII	GTNAC	2 cut(s)	212, 725
MalI	GATC	7 cut(s)	308, 382, 527, 582, 777, 801, 951
MboI	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
MboII	GAAGA	6 cut(s)	76, 92, 157, 166, 404, 1012
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	580, 799
MlsI	TGGCCA	1 cut(s)	993
MluCI	AATT	4 cut(s)	396, 489, 678, 815
MluNI	TGGCCA	1 cut(s)	993
MlyI	GAGTC	2 cut(s)	258, 886
MnlI	CCTC	9 cut(s)	189, 320, 359, 437, 492, 517, 707, 866, 940
Mox20I	TGGCCA	1 cut(s)	993
MroI	TCCGGA	1 cut(s)	802
MscI	TGGCCA	1 cut(s)	993
MseI	TTAA	5 cut(s)	8, 30, 402, 657, 746
Msp20I	TGGCCA	1 cut(s)	993
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	5 cut(s)	224, 246, 285, 791, 803
MspR9I	CCNGG	2 cut(s)	377, 791
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	626, 647, 986
NciI	CCSGG	1 cut(s)	791
NdeII	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	4 cut(s)	152, 205, 697, 825
NlaIV	GGNNCC	4 cut(s)	231, 232, 619, 801
NmuCI	GTSAC	2 cut(s)	212, 725
NspI	RCATGY	1 cut(s)	205
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	113, 125, 503
PkrI	GCNGC	3 cut(s)	514, 796, 1002
PleI	GAGTC	2 cut(s)	257, 886
PpsI	GAGTC	2 cut(s)	257, 886
Ppu21I	YACGTR	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	4 cut(s)	231, 232, 619, 801
PspPI	GGNCC	3 cut(s)	230, 551, 643
PspPPI	RGGWCCY	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	580, 799
RsaI	GTAC	2 cut(s)	54, 200
RsaNI	GTAC	2 cut(s)	53, 199
SaqAI	TTAA	5 cut(s)	8, 30, 402, 657, 746
SatI	GCNGC	3 cut(s)	513, 795, 1001
Sau3AI	GATC	7 cut(s)	306, 380, 525, 580, 775, 799, 949
Sau96I	GGNCC	3 cut(s)	230, 551, 643
SchI	GAGTC	2 cut(s)	258, 886
ScrFI	CCNGG	2 cut(s)	377, 791
SfaNI	GCATC	1 cut(s)	487
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	230, 643
SnaBI	TACGTA	1 cut(s)	52
Sse9I	AATT	4 cut(s)	396, 489, 678, 815
SsiI	CCGC	8 cut(s)	227, 324, 513, 603, 641, 797, 848, 923
SspI	AATATT	1 cut(s)	71
SspMI	CTAG	5 cut(s)	77, 110, 422, 467, 896
StyD4I	CCNGG	2 cut(s)	375, 789
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	4 cut(s)	54, 222, 267, 441
TasI	AATT	4 cut(s)	396, 489, 678, 815
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	3 cut(s)	113, 125, 503
Tru1I	TTAA	5 cut(s)	8, 30, 402, 657, 746
Tru9I	TTAA	5 cut(s)	8, 30, 402, 657, 746
TscAI	CASTG	2 cut(s)	527, 672
TseFI	GTSAC	2 cut(s)	212, 725
TseI	GCWGC	2 cut(s)	794, 1000
Tsp45I	GTSAC	2 cut(s)	212, 725
TspDTI	ATGAA	2 cut(s)	153, 405
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	2 cut(s)	527, 672
VpaK11BI	GGWCC	2 cut(s)	230, 643
XapI	RAATTY	1 cut(s)	396
XbaI	TCTAGA	1 cut(s)	895
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 359
XspI	CTAG	5 cut(s)	77, 110, 422, 467, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.