Rorug05G0582600

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015532
Physical Location & Seq
Forward (+)
77979892 .. 77980482
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0582600.1

Sequence Viewer

Length: 510 bp
ATGGAACCACAAACCCAGCAACCAATCGAGGATGGAGGAAGCAACAAAGCAGCCAGGAGTAGTGCTAACATGCATTGCAGGCAGAGTAGTACCAGGTGGCTTCCTACTACAGATCAGATAAGAATCCTCAAGGAGATTTACGATGACAAGGGAGTTAAGTCTCCAACTAACCAAAGGGCTCGGGAGAAGCTGAAGAAGAAGAAGCTCACTTCGGATGTTCAAGTGCCCAAGCAAAGATCAGGGCTTGTTGGTGGATCCATTAATCTTAATTTTGGGTCAACTAGTTCTGCTGGTGTTGGTGCATCCAGCATGGAACAACGAGGAGAAGATCACCAGGAGATTAAAACCCTTCCATTGTTTCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGATTACTTCCGAGGGAGGTAGCGGCTATGACGACTACTCCGGTGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCAGGAGCTGCTGATTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

169

Amino Acids

18.15

Weight (kDa)

7.84

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 417, 441
AclWI GGATC 2 cut(s) 249, 262
AcuI CTGAAG 1 cut(s) 212
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 1 cut(s) 221
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 3 cut(s) 53, 92, 333
AluBI AGCT 5 cut(s) 190, 205, 475, 494, 506
AluI AGCT 5 cut(s) 190, 205, 475, 494, 506
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 2 cut(s) 249, 262
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 180
ApeKI GCWGC 2 cut(s) 50, 494
AseI ATTAAT 1 cut(s) 261
AsuHPI GGTGA 2 cut(s) 323, 383
AvaI CYCGRG 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 228
BamHI GGATCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 181, 477
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 62, 481
BccI CCATC 1 cut(s) 26
BciT130I CCWGG 3 cut(s) 55, 94, 335
BcoDI GTCTC 1 cut(s) 165
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 4 cut(s) 51, 418, 442, 495
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 4 cut(s) 52, 419, 443, 496
Bme1390I CCNGG 3 cut(s) 55, 94, 335
BmeT110I CYCGRG 1 cut(s) 180
BmiI GGNNCC 2 cut(s) 6, 256
BmrFI CCNGG 3 cut(s) 55, 94, 335
BmsI GCATC 1 cut(s) 311
Bpu1102I GCTNAGC 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 113, 491
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 434
BsaXI ACNNNNNCTCC 2 cut(s) 416, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 122
BseBI CCWGG 3 cut(s) 55, 94, 335
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 3 cut(s) 37, 220, 302
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 490, 501
BseRI GAGGAG 1 cut(s) 336
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 62, 481
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 181, 228, 477
Bsp143I GATC 4 cut(s) 112, 236, 254, 328
Bsp1720I GCTNAGC 1 cut(s) 476
BspACI CCGC 2 cut(s) 417, 441
BspCNI CTCAG 2 cut(s) 489, 500
BspLI GGNNCC 2 cut(s) 6, 256
BspPI GGATC 2 cut(s) 249, 262
BsrDI GCAATG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 4 cut(s) 112, 236, 254, 328
Bst2UI CCWGG 3 cut(s) 55, 94, 335
Bst4CI ACNGT 2 cut(s) 371, 452
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 3 cut(s) 476, 487, 507
BstF5I GGATG 3 cut(s) 37, 220, 302
BstKTI GATC 4 cut(s) 115, 239, 257, 331
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 4 cut(s) 112, 236, 254, 328
BstMWI GCNNNNNNNGC 2 cut(s) 79, 503
BstNI CCWGG 3 cut(s) 55, 94, 335
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 3 cut(s) 53, 92, 333
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 62, 481
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtsCI GGATG 3 cut(s) 37, 220, 302
Cac8I GCNNGC 1 cut(s) 80
CaiI CAGNNNCTG 1 cut(s) 494
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 4 cut(s) 70, 310, 364, 391
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 3 cut(s) 476, 487, 507
DpnI GATC 4 cut(s) 114, 238, 256, 330
DpnII GATC 4 cut(s) 112, 236, 254, 328
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 2 cut(s) 181, 477
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 53, 92, 333
EcoT22I ATGCAT 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 181, 477
FaeI CATG 4 cut(s) 73, 313, 367, 394
FaiI YATR 5 cut(s) 71, 311, 365, 392, 423
FatI CATG 4 cut(s) 69, 309, 363, 390
Fnu4HI GCNGC 4 cut(s) 51, 418, 442, 495
FokI GGATG 3 cut(s) 44, 227, 289
FriOI GRGCYC 2 cut(s) 181, 477
Fsp4HI GCNGC 4 cut(s) 51, 418, 442, 495
FspBI CTAG 1 cut(s) 282
GluI GCNGC 4 cut(s) 51, 418, 442, 495
GsaI CCCAGC 1 cut(s) 19
HapII CCGG 1 cut(s) 435
Hin1II CATG 4 cut(s) 73, 313, 367, 394
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 2 cut(s) 123, 500
HpaII CCGG 1 cut(s) 435
HphI GGTGA 2 cut(s) 323, 383
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 3 cut(s) 117, 214, 406
Hpy188III TCNNGA 2 cut(s) 182, 489
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 359
HpyCH4III ACNGT 2 cut(s) 371, 452
HpyCH4V TGCA 4 cut(s) 73, 78, 302, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 503
HpyF3I CTNAG 3 cut(s) 476, 487, 507
Hsp92II CATG 4 cut(s) 73, 313, 367, 394
Kzo9I GATC 4 cut(s) 112, 236, 254, 328
LmnI GCTCC 1 cut(s) 491
Lsp1109I GCAGC 2 cut(s) 62, 481
LweI GCATC 1 cut(s) 311
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 1 cut(s) 282
MalI GATC 4 cut(s) 114, 238, 256, 330
MboI GATC 4 cut(s) 112, 236, 254, 328
MboII GAAGA 5 cut(s) 205, 208, 211, 338, 406
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 3 cut(s) 181, 228, 477
MluCI AATT 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 188
MnlI CCTC 8 cut(s) 22, 29, 137, 314, 367, 400, 404, 491
Mph1103I ATGCAT 1 cut(s) 75
MseI TTAA 4 cut(s) 156, 261, 267, 342
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 3 cut(s) 55, 94, 335
MvaI CCWGG 3 cut(s) 55, 94, 335
MwoI GCNNNNNNNGC 2 cut(s) 79, 503
NdeII GATC 4 cut(s) 112, 236, 254, 328
NlaIII CATG 4 cut(s) 73, 313, 367, 394
NlaIV GGNNCC 2 cut(s) 6, 256
NsiI ATGCAT 1 cut(s) 75
NspI RCATGY 1 cut(s) 73
PfeI GAWTC 2 cut(s) 123, 500
PkrI GCNGC 4 cut(s) 52, 419, 443, 496
PshBI ATTAAT 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 53, 92, 333
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 53, 92, 333
PspN4I GGNNCC 2 cut(s) 6, 256
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 4 cut(s) 156, 261, 267, 342
SatI GCNGC 4 cut(s) 51, 418, 442, 495
Sau3AI GATC 4 cut(s) 112, 236, 254, 328
ScrFI CCNGG 3 cut(s) 55, 94, 335
SduI GDGCHC 3 cut(s) 181, 228, 477
SetI ASST 7 cut(s) 98, 192, 207, 415, 477, 496, 508
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 128, 470
SmoI CTYRAG 2 cut(s) 128, 470
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 1 cut(s) 268
SsiI CCGC 2 cut(s) 417, 441
SspMI CTAG 1 cut(s) 282
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 3 cut(s) 53, 92, 333
TaaI ACNGT 2 cut(s) 371, 452
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 268
TauI GCSGC 2 cut(s) 420, 444
TfiI GAWTC 2 cut(s) 123, 500
Tru1I TTAA 4 cut(s) 156, 261, 267, 342
Tru9I TTAA 4 cut(s) 156, 261, 267, 342
TseI GCWGC 2 cut(s) 50, 494
TspDTI ATGAA 1 cut(s) 407
VspI ATTAAT 1 cut(s) 261
XceI RCATGY 1 cut(s) 73
XspI CTAG 1 cut(s) 282
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.