Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0015532

Physical Location & Seq

Genomic Coordinates Forward (+)

55245448 .. 55246359

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTCAAACAACAATGAAATAATCCACGACTTCCCACCTTTCTTCAAAGTCTTCAAAGATGGTAGCATAGAGAGGTACATGCCACTCCATGGCCCCGTTCCAGCGGGACTCGACCCAACAACCGGAGTCCAATCCAAAGACGTGGAGGTCTCGCTTGAAACCGGAGTAAAGGCTCGTATTTTCATCCCCAAAATCAACGGCGGAGGTCAGAAGCTGCCCCTCTTAGTCCATTACCACGGTGGAGGCTTCTGCATGGGATCACCCCTTGGTGACATTGGAAAGAAGTTTTTTTCATCTCTAGTCCTCAAAGCCAACATCATCGTACTTTCTGTTGACTACAGGCTAGCCCCAGAGCATCCTCTACCAATTGCCTACGACGATTCCTTAGCCGCTTTGCACTGGATCGCTTCCCACTCTAATAGACAAGGGCCTGAAGCTTGGCTCAACGAGTATGCAGATCTGGACAGGGTTTTCTTGGGCGGTGAGAGTGCTGGAGCCAACATCGCTCATTATGTTGCGGTCCAAGCTGGGGTTAATGTTCCAGTGGGGTTGAACATTGTTGGCTTAGTTATGGTGCACCCCTTCTTTGGAGGTAAAGAGTGTGACAAGATGTACAAGTTTTTAAGCTCAACGAGTTCAGGCTGCGATGATGATCCAAAACTGAACCCGGCAGCGGATCCGGACTTGGTGAAATTGCCATGTAGGAAGGTGTTGGTTTGTGTTGCGGAGAAAGATTGGCTGAGAGATAGAGGAGTGAGCTACTATGAGACTCTAGAGAAACTGAAAGGGGAAGGGTTTGCGGAGTTGTTTGAGACAAAAGGAGAGGACCATTGCTTTCATTTGTTCAACCCCAATGCCGACAAGGCTGGCCATCTGCTGCAAAAAGTGGTTGATTTCTTCAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

304

Amino Acids

33.24

Weight (kDa)

5.72

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	61 - 175	4.2e-06	Carboxylesterase family
BD-FAE	PF20434	69 - 178	1.2e-10	BD-FAE
Abhydrolase_3	PF07859	76 - 281	1.6e-43	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06620
rosa_chinensis	RchiOBHm_Chr6g0258681
rosa_laevigata	RLG00000014590 RLG00000014598 RLG00000014603
rosa_roxburghii	Rroxscaffold_7G00205900 Rroxscaffold_7G00205950 Rroxscaffold_7G00206010
rosa_rugosa	Rorug05G0582600 Rorug05G0582800 Rorug05G0582800
rosa_samantha	Rh6CG087700 Rh6CG088000 Rh6CG088200
rosa_wichuraiana	Rw6G008590 Rw6G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	149
AccB7I	CCANNNNNTGG	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	8 cut(s)	107, 204, 393, 483, 521, 677, 728, 803
AclWI	GGATC	5 cut(s)	268, 413, 650, 674, 687
AcoI	YGGCCR	1 cut(s)	871
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	3 cut(s)	80, 327, 617
AfiI	CCNNNNNNNGG	5 cut(s)	92, 125, 532, 590, 676
AgsI	TTSAA	7 cut(s)	9, 49, 58, 161, 556, 850, 904
AjiI	CACGTC	1 cut(s)	145
AluBI	AGCT	5 cut(s)	217, 440, 530, 630, 762
AluI	AGCT	5 cut(s)	217, 440, 530, 630, 762
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	3 cut(s)	157, 764, 809
Alw44I	GTGCAC	1 cut(s)	578
AlwI	GGATC	5 cut(s)	268, 413, 650, 674, 687
AlwNI	CAGNNNCTG	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	682
AoxI	GGCC	3 cut(s)	94, 431, 871
ApaLI	GTGCAC	1 cut(s)	578
ApeKI	GCWGC	4 cut(s)	217, 645, 674, 880
AspS9I	GGNCC	4 cut(s)	95, 431, 523, 829
AsuC2I	CCSGG	1 cut(s)	671
AsuHPI	GGTGA	4 cut(s)	255, 284, 497, 703
AsuNHI	GCTAGC	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	523, 829
BaeGI	GKGCMC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	679
BbsI	GAAGAC	1 cut(s)	46
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	4 cut(s)	204, 632, 686, 867
BccI	CCATC	2 cut(s)	56, 882
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	671
BcoDI	GTCTC	3 cut(s)	157, 764, 809
BfaI	CTAG	3 cut(s)	302, 347, 776
BfmI	CTRYAG	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	866
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	5 cut(s)	218, 393, 646, 675, 881
BlsI	GCNGC	5 cut(s)	219, 394, 647, 676, 882
Bme1390I	CCNGG	1 cut(s)	671
Bme18I	GGWCC	2 cut(s)	523, 829
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	4 cut(s)	95, 431, 523, 829
BmiI	GGNNCC	3 cut(s)	97, 499, 681
BmrFI	CCNGG	1 cut(s)	671
BmsI	GCATC	1 cut(s)	367
BmtI	GCTAGC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	91, 238, 268
BsaWI	WCCGGW	3 cut(s)	125, 164, 682
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 125, 532, 590, 676
Bse1I	ACTGG	2 cut(s)	407, 545
Bse3DI	GCAATG	1 cut(s)	832
Bse8I	GATNNNNATC	1 cut(s)	654
BseAI	TCCGGA	1 cut(s)	682
BseDI	CCNNGG	3 cut(s)	91, 238, 268
BseGI	GGATG	2 cut(s)	186, 358
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	5 cut(s)	92, 125, 532, 590, 676
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	407, 545
BseRI	GAGGAG	1 cut(s)	768
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	4 cut(s)	204, 632, 686, 867
BseYI	CCCAGC	1 cut(s)	530
BshFI	GGCC	3 cut(s)	96, 433, 873
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	4 cut(s)	126, 165, 671, 683
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	5 cut(s)	92, 125, 532, 590, 676
BsmAI	GTCTC	3 cut(s)	157, 764, 809
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	96, 433, 873
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp13I	TCCGGA	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	5 cut(s)	260, 405, 460, 655, 679
Bsp19I	CCATGG	1 cut(s)	91
BspACI	CCGC	8 cut(s)	107, 204, 393, 483, 521, 677, 728, 803
BspANI	GGCC	3 cut(s)	96, 433, 873
BspCNI	CTCAG	1 cut(s)	735
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	97, 499, 681
BspOI	GCTAGC	1 cut(s)	350
BspPI	GGATC	5 cut(s)	268, 413, 650, 674, 687
BspTNI	GGTCTC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	407, 545
BssECI	CCNNGG	3 cut(s)	91, 238, 268
BssMI	GATC	5 cut(s)	260, 405, 460, 655, 679
BssT1I	CCWWGG	2 cut(s)	91, 268
Bst4CI	ACNGT	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	348, 871
BstDEI	CTNAG	4 cut(s)	226, 388, 568, 743
BstDSI	CCRYGG	2 cut(s)	91, 238
BstF5I	GGATG	2 cut(s)	186, 358
BstKTI	GATC	5 cut(s)	263, 408, 463, 658, 682
BstMAI	GTCTC	3 cut(s)	157, 764, 809
BstMBI	GATC	5 cut(s)	260, 405, 460, 655, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 527, 866
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	669
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	204, 632, 686, 867
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	2 cut(s)	460, 679
BstXI	CCANNNNNNTGG	1 cut(s)	145
BstYI	RGATCY	2 cut(s)	460, 679
BsuRI	GGCC	3 cut(s)	96, 433, 873
BtgI	CCRYGG	2 cut(s)	91, 238
BtgZI	GCGATG	2 cut(s)	490, 663
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	186, 358
BtsIMutI	CAGTG	2 cut(s)	400, 552
Cac8I	GCNNGC	2 cut(s)	348, 871
CaiI	CAGNNNCTG	1 cut(s)	217
Cfr13I	GGNCC	4 cut(s)	95, 431, 523, 829
Csp6I	GTAC	3 cut(s)	79, 326, 616
CviAII	CATG	4 cut(s)	82, 92, 256, 702
CviQI	GTAC	3 cut(s)	79, 326, 616
DdeI	CTNAG	4 cut(s)	226, 388, 568, 743
DpnI	GATC	5 cut(s)	262, 407, 462, 657, 681
DpnII	GATC	5 cut(s)	260, 405, 460, 655, 679
DrdI	GACNNNNNNGTC	1 cut(s)	149
DseDI	GACNNNNNNGTC	1 cut(s)	149
EaeI	YGGCCR	1 cut(s)	871
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	91, 268
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	523, 829
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	91, 268
ErhI	CCWWGG	2 cut(s)	91, 268
FaeI	CATG	4 cut(s)	85, 95, 259, 705
FaiI	YATR	9 cut(s)	71, 83, 93, 257, 456, 516, 575, 703, 768
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	81, 91, 255, 701
FauI	CCCGC	1 cut(s)	100
Fnu4HI	GCNGC	5 cut(s)	218, 393, 646, 675, 881
FokI	GGATG	2 cut(s)	173, 345
Fsp4HI	GCNGC	5 cut(s)	218, 393, 646, 675, 881
FspBI	CTAG	3 cut(s)	302, 347, 776
GluI	GCNGC	5 cut(s)	218, 393, 646, 675, 881
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	96, 433, 873
HapII	CCGG	4 cut(s)	126, 165, 671, 683
Hin1II	CATG	4 cut(s)	85, 95, 259, 705
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	5 cut(s)	5, 111, 129, 383, 772
HpaII	CCGG	4 cut(s)	126, 165, 671, 683
HphI	GGTGA	4 cut(s)	255, 284, 497, 703
Hpy166II	GTNNAC	2 cut(s)	337, 580
Hpy188I	TCNGA	2 cut(s)	213, 911
Hpy188III	TCNNGA	3 cut(s)	464, 683, 776
Hpy8I	GTNNAC	2 cut(s)	337, 580
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	595, 703, 788
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	5 cut(s)	255, 400, 458, 580, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 527, 866
HpyF3I	CTNAG	4 cut(s)	226, 388, 568, 743
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	85, 95, 259, 705
Kpn2I	TCCGGA	1 cut(s)	682
Kzo9I	GATC	5 cut(s)	260, 405, 460, 655, 679
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	4 cut(s)	204, 632, 686, 867
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	3 cut(s)	302, 347, 776
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	272, 605
MalI	GATC	5 cut(s)	262, 407, 462, 657, 681
MboI	GATC	5 cut(s)	260, 405, 460, 655, 679
MboII	GAAGA	3 cut(s)	37, 46, 892
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	2 cut(s)	460, 679
MhlI	GDGCHC	1 cut(s)	582
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	2 cut(s)	369, 695
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	3 cut(s)	105, 138, 766
Mox20I	TGGCCA	1 cut(s)	873
MroI	TCCGGA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	2 cut(s)	537, 626
Msp20I	TGGCCA	1 cut(s)	873
MspA1I	CMGCKG	2 cut(s)	107, 677
MspI	CCGG	4 cut(s)	126, 165, 671, 683
MspR9I	CCNGG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	506, 527, 866
NciI	CCSGG	1 cut(s)	671
NcoI	CCATGG	1 cut(s)	91
NdeII	GATC	5 cut(s)	260, 405, 460, 655, 679
NheI	GCTAGC	1 cut(s)	346
NlaIII	CATG	4 cut(s)	85, 95, 259, 705
NlaIV	GGNNCC	3 cut(s)	97, 499, 681
NmuCI	GTSAC	2 cut(s)	272, 605
NspI	RCATGY	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	5, 383
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	219, 394, 647, 676, 882
PleI	GAGTC	3 cut(s)	105, 137, 766
PpsI	GAGTC	3 cut(s)	105, 137, 766
PspFI	CCCAGC	1 cut(s)	530
PspN4I	GGNNCC	3 cut(s)	97, 499, 681
PspPI	GGNCC	4 cut(s)	95, 431, 523, 829
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	2 cut(s)	460, 679
RsaI	GTAC	3 cut(s)	80, 327, 617
RsaNI	GTAC	3 cut(s)	79, 326, 616
SaqAI	TTAA	2 cut(s)	537, 626
SatI	GCNGC	5 cut(s)	218, 393, 646, 675, 881
Sau3AI	GATC	5 cut(s)	260, 405, 460, 655, 679
Sau96I	GGNCC	4 cut(s)	95, 431, 523, 829
SchI	GAGTC	3 cut(s)	105, 138, 766
ScrFI	CCNGG	1 cut(s)	671
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	2 cut(s)	523, 829
Sse9I	AATT	2 cut(s)	369, 695
SsiI	CCGC	8 cut(s)	107, 204, 393, 483, 521, 677, 728, 803
SspMI	CTAG	3 cut(s)	302, 347, 776
StyD4I	CCNGG	1 cut(s)	669
StyI	CCWWGG	2 cut(s)	91, 268
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	369, 695
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	5, 383
Tru1I	TTAA	2 cut(s)	537, 626
Tru9I	TTAA	2 cut(s)	537, 626
TscAI	CASTG	2 cut(s)	407, 552
TseFI	GTSAC	2 cut(s)	272, 605
TseI	GCWGC	4 cut(s)	217, 645, 674, 880
Tsp45I	GTSAC	2 cut(s)	272, 605
TspDTI	ATGAA	4 cut(s)	33, 175, 285, 830
TspRI	CASTG	2 cut(s)	407, 552
Van91I	CCANNNNNTGG	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	578
VpaK11BI	GGWCC	2 cut(s)	523, 829
XbaI	TCTAGA	1 cut(s)	775
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XspI	CTAG	3 cut(s)	302, 347, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.