Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015532

Physical Location & Seq

Genomic Coordinates Reverse (-)

55621040 .. 55627052

Gene Structure 6013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTATCAGTTTTTAAGCTCAACGAGTTCAGGGTGCGATGATGATCCTAAACTGAACCCGGCAGCGGATCCGGACTTGGTGAAATTGCCATGTGGGAAGGTGTTGGTTTGTATTGCGGAGAAAGATTCGCTGAGAGATAGAGGAGTGAGCTACCATGAGACTCTAGAGAAACTGAAAGGGGAAGGGTTTGCGGAGTTGTTTAATTTGAGACAAAAGGAGAGGACCATTGCTTTCATTTGTTCAACCCAAATGCCGACAAGGCTAGGCCATCTGATGCAAAAAGTGTTCAATTCCTTGGCAGTTGGTACACTAACACACTTGATAAAACTTCAATCGAAGTTCGAACGGAAAAAGTGGGTACATTACTTGGTACATGAATTGCCCAAGTGTGCTCATTTGCTTTTATTGAGGAAAGAAATCCTCCATGAGTTGGCGTTTGCATTGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

149

Amino Acids

16.95

Weight (kDa)

8.82

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g06620
rosa_chinensis	RchiOBHm_Chr6g0258681
rosa_laevigata	RLG00000014590 RLG00000014598 RLG00000014603
rosa_roxburghii	Rroxscaffold_7G00205900 Rroxscaffold_7G00205950 Rroxscaffold_7G00206010
rosa_rugosa	Rorug05G0582600 Rorug05G0582800 Rorug05G0582800
rosa_samantha	Rh6CG087700 Rh6CG088000 Rh6CG088200
rosa_wichuraiana	Rw6G008590 Rw6G008610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	65, 116, 191
AclWI	GGATC	3 cut(s)	38, 62, 75
AfaI	GTAC	3 cut(s)	307, 360, 372
AfiI	CCNNNNNNNGG	2 cut(s)	64, 430
AgsI	TTSAA	3 cut(s)	243, 289, 332
AluBI	AGCT	2 cut(s)	18, 150
AluI	AGCT	2 cut(s)	18, 150
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	152, 202
AlwI	GGATC	3 cut(s)	38, 62, 75
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	342
AvaII	GGWCC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	152, 202
BfaI	CTAG	2 cut(s)	164, 263
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	59
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	264
Bpu14I	TTCGAA	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 430
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	64, 430
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	74
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	2 cut(s)	59, 71
BslI	CCNNNNNNNGG	2 cut(s)	64, 430
BsmAI	GTCTC	2 cut(s)	152, 202
BsnI	GGCC	1 cut(s)	267
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	43, 67
BspACI	CCGC	3 cut(s)	65, 116, 191
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	446
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	3 cut(s)	38, 62, 75
BspT104I	TTCGAA	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	43, 67
BssT1I	CCWWGG	1 cut(s)	294
BstBI	TTCGAA	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	46, 70
BstMAI	GTCTC	2 cut(s)	152, 202
BstMBI	GATC	2 cut(s)	43, 67
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	267
BtgZI	GCGATG	1 cut(s)	51
CciI	TCATGA	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	306, 359, 371
CviAII	CATG	5 cut(s)	90, 155, 374, 425, 447
CviJI	RGCY	4 cut(s)	18, 150, 262, 267
CviKI_1	RGCY	4 cut(s)	18, 150, 262, 267
CviQI	GTAC	3 cut(s)	306, 359, 371
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	2 cut(s)	45, 69
DpnII	GATC	2 cut(s)	43, 67
Eco130I	CCWWGG	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	93, 158, 377, 428, 450
FaiI	YATR	5 cut(s)	91, 156, 375, 426, 448
FatI	CATG	5 cut(s)	89, 154, 373, 424, 446
Fnu4HI	GCNGC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	63
FspBI	CTAG	2 cut(s)	164, 263
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	2 cut(s)	59, 71
Hin1II	CATG	5 cut(s)	93, 158, 377, 428, 450
HinfI	GANTC	2 cut(s)	125, 160
HpaII	CCGG	2 cut(s)	59, 71
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	3 cut(s)	71, 164, 447
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	2 cut(s)	91, 176
HpyCH4V	TGCA	2 cut(s)	277, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	131
Hsp92II	CATG	5 cut(s)	93, 158, 377, 428, 450
Kpn2I	TCCGGA	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	43, 67
LpnPI	CCDG	3 cut(s)	15, 72, 84
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	2 cut(s)	164, 263
MalI	GATC	2 cut(s)	45, 69
MboI	GATC	2 cut(s)	43, 67
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	4 cut(s)	83, 202, 289, 377
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	4 cut(s)	134, 213, 402, 431
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	2 cut(s)	14, 201
MslI	CAYNNNNRTG	1 cut(s)	445
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	59, 71
MspR9I	CCNGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	259
NciI	CCSGG	1 cut(s)	59
NdeII	GATC	2 cut(s)	43, 67
NlaIII	CATG	5 cut(s)	93, 158, 377, 428, 450
NlaIV	GGNNCC	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	342
PagI	TCATGA	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	3 cut(s)	307, 360, 372
RsaNI	GTAC	3 cut(s)	306, 359, 371
RseI	CAYNNNNRTG	1 cut(s)	445
SaqAI	TTAA	2 cut(s)	14, 201
SatI	GCNGC	1 cut(s)	63
Sau3AI	GATC	2 cut(s)	43, 67
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	3 cut(s)	20, 102, 152
SfaNI	GCATC	1 cut(s)	264
SfuI	TTCGAA	1 cut(s)	342
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	445
Sse9I	AATT	4 cut(s)	83, 202, 289, 377
SsiI	CCGC	3 cut(s)	65, 116, 191
SspMI	CTAG	2 cut(s)	164, 263
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	2 cut(s)	335, 342
TasI	AATT	4 cut(s)	83, 202, 289, 377
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	14, 201
Tru9I	TTAA	2 cut(s)	14, 201
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	223, 390
TspGWI	ACGGA	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	222
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	2 cut(s)	164, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.